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	nthreads -> sam2bam	[_draw_="c 7 -#000000 B 7 693.09 718.59 702.35 713.9 713.93 707.86 724 702 756.52 683.09 792.96 658.96 814.67 644.26 ",
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	nthreads -> filtered2sorted	[_draw_="c 7 -#000000 B 7 680.38 718.81 691.78 697.94 724.06 641.71 761 603 808.3 553.42 883.67 522.28 928.34 507.1 ",
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	nthreads -> sort_bams	[_draw_="c 7 -#000000 B 10 689.96 718.52 696.9 714.01 705.23 708.13 712 702 735.36 680.83 735.47 670.05 758 648 776.47 629.92 799.75 611.49 \
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	extract_basename_1	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1064.5 790.5 1064.5 809.5 1183.5 809.5 1183.5 790.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1124 797.5 0 103 18 -extract_basename_1 ",
		height=0.27778,
		label=extract_basename_1,
		pos="1124,800",
		rects="1064.5,790.5,1183.5,809.5",
		width=1.6528];
	input_fastq_read1_files -> extract_basename_1	[_draw_="c 7 -#000000 B 7 944.86 737.36 958.5 745.31 980.13 757.2 1000 765 1024.72 774.71 1053.24 782.74 1076.7 788.55 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1069 775.6 0 38 10 -input_file ",
		label=input_file,
		lp="1069,777.5",
		pos="e,1084.8,790.51 944.86,737.36 958.5,745.31 980.13,757.2 1000,765 1024.7,774.71 1053.2,782.74 1076.7,788.55"];
	input_fastq_read1_files -> "bowtie-pe"	[_draw_="c 7 -#000000 B 7 934.86 718.7 937.68 711.32 940.18 700.55 935 693 933.61 690.97 931.94 689.19 930.08 687.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 931.58 685.67 924.39 683.88 928.9 689.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 982.5 695.6 0 91 22 -input_fastq_read1_file ",
		label=input_fastq_read1_file,
		lp="982.5,697.5",
		pos="e,923.12,683.05 934.86,718.7 937.68,711.32 940.18,700.55 935,693 933.61,690.97 931.94,689.19 930.08,687.62"];
	genome_ref_first_index_file -> "bowtie-pe"	[_draw_="c 7 -#000000 B 10 796.5 718.53 802.14 713.83 809.13 707.78 815 702 818.81 698.24 818.42 695.77 823 693 831.29 687.98 841.01 684.44 \
850.46 681.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 850.93 684.34 857.18 680.35 849.81 679.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 878.5 695.6 0 111 27 -genome_ref_first_index_file ",
		label=genome_ref_first_index_file,
		lp="878.5,697.5",
		pos="e,858.65,680 796.5,718.53 802.14,713.83 809.13,707.78 815,702 818.81,698.24 818.42,695.77 823,693 831.29,687.98 841.01,684.44 850.46,\
681.94"];
	remove_encode_blacklist	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 760.5 440.5 760.5 459.5 901.5 459.5 901.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 831 447.5 0 125 23 -remove_encode_blacklist ",
		height=0.27778,
		label=remove_encode_blacklist,
		pos="831,450",
		rects="760.5,440.5,901.5,459.5",
		width=1.9583];
	ENCODE_blacklist_bedfile -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 16 582 718.52 592.58 709.32 607 693.56 607 676 607 676 607 676 607 606.5 607 584.65 601.12 574.87 615 558 657.8 505.98 \
697.68 536.93 757 505 778.42 493.47 800.66 476.44 815.1 464.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 816.55 466.58 820.36 460.22 813.41 462.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 609 583.1 0 6 1 -b ",
		label=b,
		lp="609,585",
		pos="e,821.52,459.25 582,718.52 592.58,709.32 607,693.56 607,676 607,676 607,676 607,606.5 607,584.65 601.12,574.87 615,558 657.8,505.98 \
697.68,536.93 757,505 778.42,493.47 800.66,476.44 815.1,464.6"];
	picard_jar_path -> mark_duplicates	[_draw_="c 7 -#000000 B 10 441.05 718.74 432.77 709.23 421 692.77 421 676 421 676 421 676 421 359 421 348.79 426.22 338.75 431.8 330.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 433.56 332.67 435.94 325.64 429.7 329.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 452.5 515.6 0 63 15 -picard_jar_path ",
		label=picard_jar_path,
		lp="452.5,517.5",
		pos="e,436.87,324.45 441.05,718.74 432.77,709.23 421,692.77 421,676 421,676 421,676 421,359 421,348.79 426.22,338.75 431.8,330.94"];
	sam2bam -> sort_bams	[_draw_="c 7 -#000000 B 4 834 620.71 834 615.59 834 608.85 834 602.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 836.45 602.78 834 595.78 831.55 602.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 853 605.6 0 38 10 -input_file ",
		label=input_file,
		lp="853,607.5",
		pos="e,834,594.27 834,620.71 834,615.59 834,608.85 834,602.67"];
	extract_basename_2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1258.5 718.5 1258.5 737.5 1377.5 737.5 1377.5 718.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1318 725.5 0 103 18 -extract_basename_2 ",
		height=0.27778,
		label=extract_basename_2,
		pos="1318,728",
		rects="1258.5,718.5,1377.5,737.5",
		width=1.6528];
	extract_basename_1 -> extract_basename_2	[_draw_="c 7 -#000000 B 7 1165.1 790.54 1190.35 784.73 1223.1 776.06 1251 765 1267.21 758.57 1284.53 749.2 1297.5 741.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1298.52 743.86 1303.29 738.18 1296.02 739.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1245 775.6 0 36 9 -file_path ",
		label=file_path,
		lp="1245,777.5",
		pos="e,1304.6,737.41 1165.1,790.54 1190.3,784.73 1223.1,776.06 1251,765 1267.2,758.57 1284.5,749.2 1297.5,741.62"];
	index_masked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 428.5 350.5 428.5 369.5 547.5 369.5 547.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 488 357.5 0 103 17 -index_masked_bams ",
		height=0.27778,
		label=index_masked_bams,
		pos="488,360",
		rects="428.5,350.5,547.5,369.5",
		width=1.6528];
	sort_masked_bams -> index_masked_bams	[_draw_="c 7 -#000000 B 7 650.65 396.73 632.24 394.03 611.68 390.71 593 387 570.92 382.62 546.49 376.64 526.76 371.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 527.47 369.17 520.08 369.77 526.23 373.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 612 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="612,382.5",
		pos="e,518.61,369.38 650.65,396.73 632.24,394.03 611.68,390.71 593,387 570.92,382.62 546.49,376.64 526.76,371.52"];
	remove_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 478 170.5 478 189.5 588 189.5 588 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 533 177.5 0 94 17 -remove_duplicates ",
		height=0.27778,
		label=remove_duplicates,
		pos="533,180",
		rects="478,170.5,588,189.5",
		width=1.5278];
	remove_duplicates -> sort_dedup_bams	[_draw_="c 7 -#000000 B 4 553.15 170.5 568.66 163.97 590.26 154.86 607.38 147.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 608 150.04 613.5 145.07 606.09 145.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 612 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="612,157.5",
		pos="e,614.89,144.48 553.15,170.5 568.66,163.97 590.26,154.86 607.38,147.64"];
	execute_pcr_bottleneck_coef -> output_pbc_files	[_draw_="c 7 -#000000 B 19 1226.45 440.59 1249.39 424 1296 384.61 1296 338.5 1296 338.5 1296 338.5 1296 269 1296 238.29 1318 234.21 1318 \
203.5 1318 203.5 1318 203.5 1318 89 1318 59.54 1419.5 70.48 1448 63 1454.67 61.25 1461.74 59.12 1468.44 56.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1468.77 59.45 1474.66 54.94 1467.25 54.79 ",
		pos="e,1476.1,54.471 1226.5,440.59 1249.4,424 1296,384.61 1296,338.5 1296,338.5 1296,338.5 1296,269 1296,238.29 1318,234.21 1318,203.5 \
1318,203.5 1318,203.5 1318,89 1318,59.539 1419.5,70.479 1448,63 1454.7,61.25 1461.7,59.125 1468.4,56.979"];
	masked_file_basename	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 765.5 395.5 765.5 414.5 896.5 414.5 896.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 831 402.5 0 115 20 -masked_file_basename ",
		height=0.27778,
		label=masked_file_basename,
		pos="831,405",
		rects="765.5,395.5,896.5,414.5",
		width=1.8194];
	masked_file_basename -> mark_duplicates	[_draw_="c 7 -#000000 B 4 793.99 395.56 722.89 379.35 567.45 343.92 490.3 326.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 491.03 323.98 483.66 324.81 489.94 328.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 709.5 358.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="709.5,360",
		pos="e,482.18,324.48 793.99,395.56 722.89,379.35 567.45,343.92 490.3,326.33"];
	extract_basename_2 -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 10 1318 718.7 1318 708.6 1318 691.05 1318 676 1318 676 1318 676 1318 584 1318 530.27 1264.68 485.3 1234.4 464.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1236.01 462.22 1228.85 460.3 1233.25 466.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1366.5 583.1 0 97 22 -input_output_filenames ",
		label=input_output_filenames,
		lp="1366.5,585",
		pos="e,1227.6,459.45 1318,718.7 1318,708.6 1318,691.05 1318,676 1318,676 1318,676 1318,584 1318,530.27 1264.7,485.3 1234.4,464.09"];
	"preseq-c-curve"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1191.5 125.5 1191.5 144.5 1280.5 144.5 1280.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1236 132.5 0 73 14 -preseq-c-curve ",
		height=0.27778,
		label="preseq-c-curve",
		pos="1236,135",
		rects="1191.5,125.5,1280.5,144.5",
		width=1.2361];
	extract_basename_2 -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 16 1311.48 718.74 1308.25 714.1 1304.68 708.05 1303 702 1301.93 698.15 1302.94 697 1303 693 1303.89 635.42 1307 621.08 \
1307 563.5 1307 563.5 1307 563.5 1307 179 1307 163.91 1295.11 153.96 1281.07 147.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1282.38 145.38 1274.98 144.98 1280.52 149.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1352.5 425.6 0 91 20 -output_file_basename ",
		label=output_file_basename,
		lp="1352.5,427.5",
		pos="e,1273.6,144.41 1311.5,718.74 1308.2,714.1 1304.7,708.05 1303,702 1301.9,698.15 1302.9,697 1303,693 1303.9,635.42 1307,621.08 1307,\
563.5 1307,563.5 1307,563.5 1307,179 1307,163.91 1295.1,153.96 1281.1,147.49"];
	extract_basename_2 -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 10 1303.45 718.62 1281.25 705.04 1239.16 676.09 1217 640 1201.44 614.64 1219.82 598.04 1201 575 1129.87 487.91 995.45 \
461.63 909.7 453.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 909.99 451.48 902.81 453.33 909.58 456.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1254.5 583.1 0 91 20 -output_basename_file ",
		label=output_basename_file,
		lp="1254.5,585",
		pos="e,901.3,453.2 1303.5,718.62 1281.2,705.04 1239.2,676.09 1217,640 1201.4,614.64 1219.8,598.04 1201,575 1129.9,487.91 995.45,461.63 \
909.7,453.91"];
	"filter-unmapped"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 917.5 530.5 917.5 549.5 1012.5 549.5 1012.5 530.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 965 537.5 0 79 15 -filter-unmapped ",
		height=0.27778,
		label="filter-unmapped",
		pos="965,540",
		rects="917.5,530.5,1012.5,549.5",
		width=1.3194];
	extract_basename_2 -> "filter-unmapped"	[_draw_="c 7 -#000000 B 7 1315.38 718.76 1312.61 711.2 1307.59 700.14 1300 693 1252.76 648.56 1069.62 578.96 995.95 552.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 997.18 549.94 989.77 549.85 995.51 554.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1241.5 628.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="1241.5,630",
		pos="e,988.35,549.33 1315.4,718.76 1312.6,711.2 1307.6,700.14 1300,693 1252.8,648.56 1069.6,578.96 995.95,552.1"];
	extract_basename_2 -> "bowtie-pe"	[_draw_="c 7 -#000000 B 13 1288.87 718.51 1277.19 715.39 1263.54 712.12 1251 710 1210.09 703.1 1198.47 711.15 1158 702 1146.89 699.49 1145.13 \
695.42 1134 693 1064.03 677.77 980.3 675.25 931.64 675.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 931.76 672.84 924.77 675.32 931.78 677.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1191.5 695.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="1191.5,697.5",
		pos="e,923.26,675.32 1288.9,718.51 1277.2,715.39 1263.5,712.12 1251,710 1210.1,703.1 1198.5,711.15 1158,702 1146.9,699.49 1145.1,695.42 \
1134,693 1064,677.77 980.3,675.25 931.64,675.29"];
	index_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 454 215.5 454 234.5 600 234.5 600 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 527 222.5 0 130 22 -index_dups_marked_bams ",
		height=0.27778,
		label=index_dups_marked_bams,
		pos="527,225",
		rects="454,215.5,600,234.5",
		width=2.0278];
	sort_dups_marked_bams -> index_dups_marked_bams	[_draw_="c 7 -#000000 B 4 527 260.71 527 255.59 527 248.85 527 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 529.45 242.78 527 235.78 524.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 546 245.6 0 38 10 -input_file ",
		label=input_file,
		lp="546,247.5",
		pos="e,527,234.27 527,260.71 527,255.59 527,248.85 527,242.67"];
	filtered2sorted -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 10 1005.46 485.52 1017.27 482.92 1030.18 479.96 1042 477 1056.33 473.41 1059.51 470.9 1074 468 1091.07 464.58 1109.46 \
461.75 1127.12 459.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1127.04 461.93 1133.67 458.62 1126.42 457.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1106 470.6 0 64 15 -input_bam_files ",
		label=input_bam_files,
		lp="1106,472.5",
		pos="e,1135.2,458.42 1005.5,485.52 1017.3,482.92 1030.2,479.96 1042,477 1056.3,473.41 1059.5,470.9 1074,468 1091.1,464.58 1109.5,461.75 \
1127.1,459.45"];
	filtered2sorted -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 13 1004.49 485.59 1021.69 479.38 1038 468.8 1038 451 1038 451 1038 451 1038 359 1038 334.8 1033.66 326.38 1045 305 \
1084.75 230.06 1171.97 172.64 1213.35 148.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1214.36 150.73 1219.21 145.12 1211.92 146.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1079 313.1 0 68 17 -input_sorted_file ",
		label=input_sorted_file,
		lp="1079,315",
		pos="e,1220.5,144.36 1004.5,485.59 1021.7,479.38 1038,468.8 1038,451 1038,451 1038,451 1038,359 1038,334.8 1033.7,326.38 1045,305 1084.7,\
230.06 1172,172.64 1213.4,148.48"];
	filtered2sorted -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 4 938.53 485.5 917.6 478.79 888.24 469.37 865.48 462.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 866.27 459.75 858.86 459.94 864.78 464.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 913 470.6 0 6 1 -a ",
		label=a,
		lp="913,472.5",
		pos="e,857.42,459.48 938.53,485.5 917.6,478.79 888.24,469.37 865.48,462.06"];
	index_dups_marked_bams -> output_data_sorted_dups_marked_bam_files	[_draw_="c 7 -#000000 B 10 499.57 215.58 484.17 208.97 468 197.98 468 181 468 181 468 181 468 89 468 73.51 435.35 62.86 402.16 56.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 403.01 53.7 395.67 54.75 402.06 58.51 ",
		pos="e,394.18,54.461 499.57,215.58 484.17,208.97 468,197.98 468,181 468,181 468,181 468,89 468,73.515 435.35,62.86 402.16,56.031"];
	index_dups_marked_bams -> remove_duplicates	[_draw_="c 7 -#000000 B 4 528.16 215.71 528.87 210.59 529.81 203.85 530.67 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 533.1 198.04 531.64 190.76 528.24 197.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 549 200.6 0 38 10 -input_file ",
		label=input_file,
		lp="549,202.5",
		pos="e,531.85,189.27 528.16,215.71 528.87,210.59 529.81,203.85 530.67,197.67"];
	"preseq-c-curve" -> output_preseq_c_curve_files	[_draw_="c 7 -#000000 B 10 1280.41 128.51 1287.64 125.95 1294.54 122.27 1300 117 1315.38 102.16 1299.86 87.02 1314 71 1318.71 65.66 1324.78 \
61.41 1331.17 58.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1332.11 60.31 1337.4 55.11 1330.02 55.87 ",
		pos="e,1338.8,54.471 1280.4,128.51 1287.6,125.95 1294.5,122.27 1300,117 1315.4,102.16 1299.9,87.021 1314,71 1318.7,65.664 1324.8,61.411 \
1331.2,58.038"];
	percent_uniq_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1149 80.5 1149 99.5 1261 99.5 1261 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1205 87.5 0 96 18 -percent_uniq_reads ",
		height=0.27778,
		label=percent_uniq_reads,
		pos="1205,90",
		rects="1149,80.5,1261,99.5",
		width=1.5556];
	"preseq-c-curve" -> percent_uniq_reads	[_draw_="c 7 -#000000 B 7 1217.87 125.64 1214.45 123.29 1211.25 120.43 1209 117 1207.19 114.24 1206.08 110.97 1205.43 107.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1207.88 107.58 1204.72 100.87 1203 108.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1256 110.6 0 94 22 -preseq_c_curve_outfile ",
		label=preseq_c_curve_outfile,
		lp="1256,112.5",
		pos="e,1204.6,99.36 1217.9,125.64 1214.5,123.29 1211.2,120.43 1209,117 1207.2,114.24 1206.1,110.97 1205.4,107.69"];
	remove_encode_blacklist -> sort_masked_bams	[_draw_="c 7 -#000000 B 4 806.3 440.5 786.87 433.82 759.63 424.45 738.44 417.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 739.49 414.93 732.08 414.97 737.9 419.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 798 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="798,427.5",
		pos="e,730.64,414.48 806.3,440.5 786.87,433.82 759.63,424.45 738.44,417.16"];
	remove_encode_blacklist -> masked_file_basename	[_draw_="c 7 -#000000 B 4 831 440.71 831 435.59 831 428.85 831 422.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 833.45 422.78 831 415.78 828.55 422.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 850 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="850,427.5",
		pos="e,831,414.27 831,440.71 831,435.59 831,428.85 831,422.67"];
	"filter-unmapped" -> filtered2sorted	[_draw_="c 7 -#000000 B 4 965 530.71 965 525.59 965 518.85 965 512.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 967.45 512.78 965 505.78 962.55 512.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 984 515.6 0 38 10 -input_file ",
		label=input_file,
		lp="984,517.5",
		pos="e,965,504.27 965,530.71 965,525.59 965,518.85 965,512.67"];
	sort_bams -> "filter-unmapped"	[_draw_="c 7 -#000000 B 4 859.88 575.5 880.34 568.79 909.05 559.37 931.3 552.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 931.85 554.46 937.73 549.95 930.32 549.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 930 560.6 0 38 10 -input_file ",
		label=input_file,
		lp="930,562.5",
		pos="e,939.17,549.48 859.88,575.5 880.34,568.79 909.05,559.37 931.3,552.06"];
	percent_uniq_reads -> output_percentage_uniq_reads	[_draw_="c 7 -#000000 B 4 1205 80.71 1205 75.59 1205 68.85 1205 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1207.45 62.78 1205 55.78 1202.55 62.78 ",
		pos="e,1205,54.265 1205,80.709 1205,75.593 1205,68.848 1205,62.666"];
	index_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 661.5 80.5 661.5 99.5 772.5 99.5 772.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 717 87.5 0 95 16 -index_dedup_bams ",
		height=0.27778,
		label=index_dedup_bams,
		pos="717,90",
		rects="661.5,80.5,772.5,99.5",
		width=1.5417];
	sort_dedup_bams -> index_dedup_bams	[_draw_="c 7 -#000000 B 4 651.2 125.5 663.33 119.14 680.1 110.35 693.67 103.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 694.43 105.6 699.49 100.18 692.16 101.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 702 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="702,112.5",
		pos="e,700.83,99.478 651.2,125.5 663.33,119.14 680.1,110.35 693.67,103.23"];
	mapped_filtered_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 489.5 80.5 489.5 99.5 650.5 99.5 650.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 570 87.5 0 145 27 -mapped_filtered_reads_count ",
		height=0.27778,
		label=mapped_filtered_reads_count,
		pos="570,90",
		rects="489.5,80.5,650.5,99.5",
		width=2.2361];
	sort_dedup_bams -> mapped_filtered_reads_count	[_draw_="c 7 -#000000 B 7 618.64 125.63 613.84 123.01 608.63 120.01 604 117 598.13 113.18 591.98 108.65 586.54 104.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 588.32 102.73 581.31 100.32 585.29 106.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 634 110.6 0 60 14 -input_bam_file ",
		label=input_bam_file,
		lp="634,112.5",
		pos="e,580.12,99.384 618.64,125.63 613.84,123.01 608.63,120.01 604,117 598.13,113.18 591.98,108.65 586.54,104.45"];
	index_masked_bams -> mark_duplicates	[_draw_="c 7 -#000000 B 4 479.71 350.71 473.88 344.88 465.93 336.93 459.12 330.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 461.02 328.55 454.34 325.34 457.55 332.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 489 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="489,337.5",
		pos="e,453.27,324.27 479.71,350.71 473.88,344.88 465.93,336.93 459.12,330.12"];
	"bowtie-pe" -> output_bowtie_log	[_draw_="c 7 -#000000 B 25 858.65 668.16 817.86 658.72 753 635.87 753 586 753 586 753 586 753 471.5 753 457.16 749.96 450.24 760 440 765.6 \
434.29 822.12 424.42 830 423 844.76 420.34 885.88 425.06 897 415 907.63 405.38 904 397.84 904 383.5 904 383.5 904 383.5 904 89 904 \
80.29 904.62 70.6 905.3 62.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 907.73 62.94 905.94 55.74 902.85 62.48 ",
		pos="e,906.08,54.231 858.65,668.16 817.86,658.72 753,635.87 753,586 753,586 753,586 753,471.5 753,457.16 749.96,450.24 760,440 765.6,\
434.29 822.12,424.42 830,423 844.76,420.34 885.88,425.06 897,415 907.63,405.38 904,397.84 904,383.5 904,383.5 904,383.5 904,89 904,\
80.286 904.62,70.604 905.3,62.636"];
	"bowtie-pe" -> sam2bam	[_draw_="c 7 -#000000 B 4 879.74 665.5 871.78 659.5 860.94 651.32 851.81 644.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 853.51 642.65 846.45 640.39 850.56 646.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 886 650.6 0 38 10 -input_file ",
		label=input_file,
		lp="886,652.5",
		pos="e,845.24,639.48 879.74,665.5 871.78,659.5 860.94,651.32 851.81,644.43"];
	mapped_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1009.5 80.5 1009.5 99.5 1130.5 99.5 1130.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1070 87.5 0 105 18 -mapped_reads_count ",
		height=0.27778,
		label=mapped_reads_count,
		pos="1070,90",
		rects="1009.5,80.5,1130.5,99.5",
		width=1.6806];
	"bowtie-pe" -> mapped_reads_count	[_draw_="c 7 -#000000 B 16 908.27 665.52 952.78 642.53 1071.04 574.21 1115 477 1146.51 407.32 1120.02 380.82 1110 305 1103.93 259.04 1086 \
249.86 1086 203.5 1086 203.5 1086 203.5 1086 134 1086 124.54 1082.56 114.61 1078.87 106.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1081.12 105.69 1075.75 100.58 1076.76 107.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1148.5 380.6 0 45 10 -bowtie_log ",
		label=bowtie_log,
		lp="1148.5,382.5",
		pos="e,1075.1,99.229 908.27,665.52 952.78,642.53 1071,574.21 1115,477 1146.5,407.32 1120,380.82 1110,305 1103.9,259.04 1086,249.86 1086,\
203.5 1086,203.5 1086,203.5 1086,134 1086,124.54 1082.6,114.61 1078.9,106.67"];
	mapped_reads_count -> output_read_count_mapped	[_draw_="c 7 -#000000 B 4 1064.41 80.71 1060.64 75.12 1055.55 67.58 1051.09 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1053.37 59.95 1047.42 55.52 1049.3 62.69 ",
		pos="e,1046.6,54.265 1064.4,80.709 1060.6,75.117 1055.6,67.579 1051.1,60.957"];
	index_dedup_bams -> output_data_sorted_dedup_bam_files	[_draw_="c 7 -#000000 B 4 723.36 80.71 727.65 75.12 733.44 67.58 738.52 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 740.42 62.51 742.74 55.47 736.53 59.53 ",
		pos="e,743.66,54.265 723.36,80.709 727.65,75.117 733.44,67.579 738.52,60.957"];
	mapped_filtered_reads_count -> output_read_count_mapped_filtered	[_draw_="c 7 -#000000 B 4 566.14 80.71 563.65 75.36 560.33 68.22 557.35 61.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 559.66 60.95 554.48 55.64 555.21 63.02 ",
		pos="e,553.84,54.265 566.14,80.709 563.65,75.355 560.33,68.217 557.35,61.807"];
	mark_duplicates -> output_picard_mark_duplicates_files	[_draw_="c 7 -#000000 B 13 444.69 305.76 444.4 297.1 444 283.1 444 271 444 271 444 271 444 89 444 63.5 241.25 66.54 216 63 201 60.9 184.81 \
58.33 169.84 55.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 170.46 53.46 163.15 54.72 169.65 58.29 ",
		pos="e,161.66,54.467 444.69,305.76 444.4,297.1 444,283.1 444,271 444,271 444,271 444,89 444,63.502 241.25,66.542 216,63 201,60.896 184.81,\
58.332 169.84,55.84"];
	mark_duplicates -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 4 461.2 305.5 473.33 299.14 490.1 290.35 503.67 283.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 504.43 285.6 509.49 280.18 502.16 281.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 512 290.6 0 38 10 -input_file ",
		label=input_file,
		lp="512,292.5",
		pos="e,510.83,279.48 461.2,305.5 473.33,299.14 490.1,290.35 503.67,283.23"];
}