digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 323 1025 323 1025 0 ",
		bb="0,0,1025,323",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 15 260 15 315 1017 315 1017 260 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 65 303 0 84 15 -Workflow Inputs ",
			bb="15,260,1017,315",
			label="Workflow Inputs",
			lheight=0.15,
			lp="65,305.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		quality_score	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 927 268.5 927 287.5 1009 287.5 1009 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 968 275.5 0 66 13 -quality_score ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=quality_score,
			pos="968,278",
			rects="927,268.5,1009,287.5",
			width=1.1389];
		trimmomatic_jar_path	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 23.5 268.5 23.5 287.5 148.5 287.5 148.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 86 275.5 0 109 20 -trimmomatic_jar_path ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimmomatic_jar_path,
			pos="86,278",
			rects="23.5,268.5,148.5,287.5",
			width=1.7361];
		input_read2_adapters_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 305 268.5 305 287.5 453 287.5 453 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 379 275.5 0 132 26 -input_read2_adapters_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=input_read2_adapters_files,
			pos="379,278",
			rects="305,268.5,453,287.5",
			width=2.0556];
		nthreads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 457.5 268.5 457.5 287.5 516.5 287.5 516.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 487 275.5 0 43 8 -nthreads ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=nthreads,
			pos="487,278",
			rects="457.5,268.5,516.5,287.5",
			width=0.81944];
		input_read1_adapters_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 153 268.5 153 287.5 301 287.5 301 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 227 275.5 0 132 26 -input_read1_adapters_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=input_read1_adapters_files,
			pos="227,278",
			rects="153,268.5,301,287.5",
			width=2.0556];
		input_read2_fastq_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 521 268.5 521 287.5 651 287.5 651 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 586 275.5 0 114 23 -input_read2_fastq_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=input_read2_fastq_files,
			pos="586,278",
			rects="521,268.5,651,287.5",
			width=1.8056];
		trimmomatic_java_opts	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 655.5 268.5 655.5 287.5 788.5 287.5 788.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 722 275.5 0 117 21 -trimmomatic_java_opts ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimmomatic_java_opts,
			pos="722,278",
			rects="655.5,268.5,788.5,287.5",
			width=1.8472];
		input_read1_fastq_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 793 268.5 793 287.5 923 287.5 923 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 858 275.5 0 114 23 -input_read1_fastq_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=input_read1_fastq_files,
			pos="858,278",
			rects="793,268.5,923,287.5",
			width=1.8056];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 895 63 895 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,895,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		output_data_fastq_read1_trimmed_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 227.5 54.5 227.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 122 42.5 0 195 37 -output_data_fastq_read1_trimmed_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_data_fastq_read1_trimmed_files,
			pos="122,45",
			rects="16.5,35.5,227.5,54.5",
			width=2.9306];
		output_trimmed_read2_fastq_read_count	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 447 35.5 447 54.5 665 54.5 665 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 556 42.5 0 202 37 -output_trimmed_read2_fastq_read_count ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_trimmed_read2_fastq_read_count,
			pos="556,45",
			rects="447,35.5,665,54.5",
			width=3.0278];
		output_trimmed_read1_fastq_read_count	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 669 35.5 669 54.5 887 54.5 887 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 778 42.5 0 202 37 -output_trimmed_read1_fastq_read_count ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_trimmed_read1_fastq_read_count,
			pos="778,45",
			rects="669,35.5,887,54.5",
			width=3.0278];
		output_data_fastq_read2_trimmed_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 231.5 35.5 231.5 54.5 442.5 54.5 442.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 337 42.5 0 195 37 -output_data_fastq_read2_trimmed_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_data_fastq_read2_trimmed_files,
			pos="337,45",
			rects="231.5,35.5,442.5,54.5",
			width=2.9306];
	}
	trimmomatic	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 467 170.5 467 189.5 547 189.5 547 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 507 177.5 0 64 11 -trimmomatic ",
		height=0.27778,
		label=trimmomatic,
		pos="507,180",
		rects="467,170.5,547,189.5",
		width=1.1111];
	trimmomatic_jar_path -> trimmomatic	[_draw_="c 7 -#000000 B 7 102.73 268.66 130.64 255.13 188.82 228.54 241 215 315.64 195.64 405.05 187.1 458.87 183.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 458.86 185.94 465.69 183.04 458.54 181.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 285 223.1 0 88 20 -trimmomatic_jar_path ",
		label=trimmomatic_jar_path,
		lp="285,225",
		pos="e,467.2,182.94 102.73,268.66 130.64,255.13 188.82,228.54 241,215 315.64,195.64 405.05,187.1 458.87,183.48"];
	concat_adapters	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 330.5 215.5 330.5 234.5 427.5 234.5 427.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 379 222.5 0 81 15 -concat_adapters ",
		height=0.27778,
		label=concat_adapters,
		pos="379,225",
		rects="330.5,215.5,427.5,234.5",
		width=1.3472];
	input_read2_adapters_files -> concat_adapters	[_draw_="c 7 -#000000 B 4 379 268.58 379 261.52 379 251.24 379 242.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 381.45 242.78 379 235.78 376.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 400.5 245.6 0 43 11 -input_file2 ",
		label=input_file2,
		lp="400.5,247.5",
		pos="e,379,234.26 379,268.58 379,261.52 379,251.24 379,242.55"];
	nthreads -> trimmomatic	[_draw_="c 7 -#000000 B 4 488.71 268.82 491.98 253.09 499.21 218.4 503.53 197.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 505.9 198.27 504.93 190.92 501.11 197.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 517.5 223.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="517.5,225",
		pos="e,505.24,189.44 488.71,268.82 491.98,253.09 499.21,218.4 503.53,197.63"];
	input_read1_adapters_files -> concat_adapters	[_draw_="c 7 -#000000 B 4 252.1 268.58 277.73 259.98 317.66 246.58 345.88 237.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 346.57 239.47 352.43 234.92 345.01 234.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 346.5 245.6 0 43 11 -input_file1 ",
		label=input_file1,
		lp="346.5,247.5",
		pos="e,353.86,234.43 252.1,268.58 277.73,259.98 317.66,246.58 345.88,237.11"];
	input_read2_fastq_files -> trimmomatic	[_draw_="c 7 -#000000 B 7 579.79 268.86 570.62 256.91 552.83 233.95 537 215 531.52 208.43 525.28 201.31 519.92 195.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 522.03 193.98 515.54 190.4 518.38 197.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 598.5 223.1 0 91 22 -input_read2_fastq_file ",
		label=input_read2_fastq_file,
		lp="598.5,225",
		pos="e,514.53,189.27 579.79,268.86 570.62,256.91 552.83,233.95 537,215 531.52,208.43 525.28,201.31 519.92,195.3"];
	trimmomatic_java_opts -> trimmomatic	[_draw_="c 7 -#000000 B 7 714.29 268.81 701.29 255.48 673.61 229.16 645 215 616.84 201.06 582.56 192.58 555.2 187.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 555.76 185.18 548.44 186.39 554.92 190.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 695 223.1 0 40 9 -java_opts ",
		label=java_opts,
		lp="695,225",
		pos="e,546.95,186.12 714.29,268.81 701.29,255.48 673.61,229.16 645,215 616.84,201.06 582.56,192.58 555.2,187.57"];
	input_read1_fastq_files -> trimmomatic	[_draw_="c 7 -#000000 B 10 842.3 268.62 816.61 255.27 763.69 229.23 716 215 672.8 202.11 660.5 205.25 616 198 596.08 194.75 574.08 191.3 \
555.1 188.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 555.67 185.97 548.38 187.32 554.92 190.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 814.5 223.1 0 91 22 -input_read1_fastq_file ",
		label=input_read1_fastq_file,
		lp="814.5,225",
		pos="e,546.88,187.09 842.3,268.62 816.61,255.27 763.69,229.23 716,215 672.8,202.11 660.5,205.25 616,198 596.08,194.75 574.08,191.3 555.1,\
188.36"];
	count_fastq_reads_read2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 481.5 80.5 481.5 99.5 620.5 99.5 620.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 551 87.5 0 123 23 -count_fastq_reads_read2 ",
		height=0.27778,
		label=count_fastq_reads_read2,
		pos="551,90",
		rects="481.5,80.5,620.5,99.5",
		width=1.9306];
	count_fastq_reads_read2 -> output_trimmed_read2_fastq_read_count	[_draw_="c 7 -#000000 B 4 551.96 80.71 552.56 75.59 553.34 68.85 554.06 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 556.49 63 554.86 55.77 551.62 62.44 ",
		pos="e,555.04,54.265 551.96,80.709 552.56,75.593 553.34,68.848 554.06,62.666"];
	trimmomatic -> output_data_fastq_read1_trimmed_files	[_draw_="c 7 -#000000 B 7 467.3 173.74 450.12 170.99 429.88 167.12 412 162 311.01 133.09 196.81 81.51 147.21 58.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 148.29 55.92 140.91 55.14 146.19 60.35 ",
		pos="e,139.54,54.49 467.3,173.74 450.12,170.99 429.88,167.12 412,162 311.01,133.09 196.81,81.512 147.21,58.125"];
	trimmomatic -> output_data_fastq_read2_trimmed_files	[_draw_="c 7 -#000000 B 7 467.2 172.94 445.9 168.14 420.18 159.69 401 145 372.17 122.92 352.56 83.88 343.24 62.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 345.57 61.23 340.64 55.68 341.03 63.09 ",
		pos="e,340.07,54.281 467.2,172.94 445.9,168.14 420.18,159.69 401,145 372.17,122.92 352.56,83.882 343.24,62.006"];
	trimmomatic -> count_fastq_reads_read2	[_draw_="c 7 -#000000 B 10 521.52 170.56 525.17 168.07 528.92 165.15 532 162 538.29 155.56 539.82 153.42 543 145 547.55 132.95 549.52 118.47 \
550.37 107.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 552.8 107.97 550.77 100.83 547.91 107.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 579.5 133.1 0 63 16 -input_fastq_file ",
		label=input_fastq_file,
		lp="579.5,135",
		pos="e,550.85,99.323 521.52,170.56 525.17,168.07 528.92,165.15 532,162 538.29,155.56 539.82,153.42 543,145 547.55,132.95 549.52,118.47 \
550.37,107.54"];
	extract_basename_read1	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 618 125.5 618 144.5 758 144.5 758 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 688 132.5 0 124 22 -extract_basename_read1 ",
		height=0.27778,
		label=extract_basename_read1,
		pos="688,135",
		rects="618,125.5,758,144.5",
		width=1.9444];
	trimmomatic -> extract_basename_read1	[_draw_="c 7 -#000000 B 4 542.76 170.5 571.89 163.58 613.14 153.79 644.24 146.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 644.6 148.83 650.84 144.83 643.47 144.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 632 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="632,157.5",
		pos="e,652.31,144.48 542.76,170.5 571.89,163.58 613.14,153.79 644.24,146.4"];
	extract_basename_read2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 403 125.5 403 144.5 543 144.5 543 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 473 132.5 0 124 22 -extract_basename_read2 ",
		height=0.27778,
		label=extract_basename_read2,
		pos="473,135",
		rects="403,125.5,543,144.5",
		width=1.9444];
	trimmomatic -> extract_basename_read2	[_draw_="c 7 -#000000 B 4 500.44 170.71 495.93 165 489.81 157.26 484.49 150.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 486.74 149.42 480.47 145.45 482.89 152.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 512 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="512,157.5",
		pos="e,479.54,144.27 500.44,170.71 495.93,165 489.81,157.26 484.49,150.54"];
	count_fastq_reads_read1	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 696.5 80.5 696.5 99.5 835.5 99.5 835.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 766 87.5 0 123 23 -count_fastq_reads_read1 ",
		height=0.27778,
		label=count_fastq_reads_read1,
		pos="766,90",
		rects="696.5,80.5,835.5,99.5",
		width=1.9306];
	trimmomatic -> count_fastq_reads_read1	[_draw_="c 7 -#000000 B 7 546.84 179.29 610.1 178.84 729.29 174.05 758 145 767.55 135.33 768.91 119.54 768.26 107.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 770.72 107.49 767.62 100.75 765.84 107.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 798.5 133.1 0 63 16 -input_fastq_file ",
		label=input_fastq_file,
		lp="798.5,135",
		pos="e,767.47,99.244 546.84,179.29 610.1,178.84 729.29,174.05 758,145 767.55,135.33 768.91,119.54 768.26,107.53"];
	extract_basename_read1 -> count_fastq_reads_read1	[_draw_="c 7 -#000000 B 7 687.4 125.68 687.46 119.98 688.54 112.64 693 108 694.46 106.48 696.03 105.09 697.68 103.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 698.65 106.1 703.19 100.24 695.98 101.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 727.5 110.6 0 69 14 -input_basename ",
		label=input_basename,
		lp="727.5,112.5",
		pos="e,704.46,99.419 687.4,125.68 687.46,119.98 688.54,112.64 693,108 694.46,106.48 696.03,105.09 697.68,103.81"];
	extract_basename_read2 -> count_fastq_reads_read2	[_draw_="c 7 -#000000 B 7 472.4 125.68 472.46 119.98 473.54 112.64 478 108 479.46 106.48 481.03 105.09 482.68 103.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 483.65 106.1 488.19 100.24 480.98 101.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 512.5 110.6 0 69 14 -input_basename ",
		label=input_basename,
		lp="512.5,112.5",
		pos="e,489.46,99.419 472.4,125.68 472.46,119.98 473.54,112.64 478,108 479.46,106.48 481.03,105.09 482.68,103.81"];
	count_fastq_reads_read1 -> output_trimmed_read1_fastq_read_count	[_draw_="c 7 -#000000 B 4 768.31 80.71 769.77 75.47 771.71 68.53 773.47 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 775.76 63.12 775.29 55.72 771.05 61.81 ",
		pos="e,775.69,54.265 768.31,80.709 769.77,75.474 771.71,68.534 773.47,62.235"];
	concat_adapters -> trimmomatic	[_draw_="c 7 -#000000 B 7 386.89 215.64 392.92 209.76 401.76 202.23 411 198 425.94 191.17 443.36 187.07 459.22 184.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 459.26 187.09 465.86 183.69 458.58 182.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 450.5 200.6 0 79 19 -input_adapters_file ",
		label=input_adapters_file,
		lp="450.5,202.5",
		pos="e,467.35,183.48 386.89,215.64 392.92,209.76 401.76,202.23 411,198 425.94,191.17 443.36,187.07 459.22,184.62"];
}