digraph workflow {
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		output_preseq_c_curve_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1491.5 35.5 1491.5 54.5 1646.5 54.5 1646.5 35.5 ",
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	}
	mark_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 759 305.5 759 324.5 857 324.5 857 305.5 ",
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		label=mark_duplicates,
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	picard_jar_path -> mark_duplicates	[_draw_="c 7 -#000000 B 13 823.3 628.57 815.58 624.59 807.46 619.13 802 612 794.72 602.5 795 597.97 795 586 795 586 795 586 795 381.5 795 \
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	picard_java_opts -> mark_duplicates	[_draw_="c 7 -#000000 B 13 742.9 628.76 740.53 618.73 737 601.24 737 586 737 586 737 586 737 359 737 346.77 737.07 341.36 746 333 747.79 \
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		label="bowtie-se",
		pos="643,585",
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	input_fastq_files -> "bowtie-se"	[_draw_="c 7 -#000000 B 4 643 628.58 643 621.52 643 611.24 643 602.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 645.45 602.78 643 595.78 640.55 602.78 ",
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		label=input_fastq_file,
		lp="674.5,607.5",
		pos="e,643,594.26 643,628.58 643,621.52 643,611.24 643,602.55"];
	extract_basename_1	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 835.5 700.5 835.5 719.5 954.5 719.5 954.5 700.5 ",
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		height=0.27778,
		label=extract_basename_1,
		pos="895,710",
		rects="835.5,700.5,954.5,719.5",
		width=1.6528];
	input_fastq_files -> extract_basename_1	[_draw_="c 7 -#000000 B 7 652.43 647.27 662.5 655.64 679.29 668.27 696 675 737.89 691.87 788.01 700.37 827.48 704.66 ",
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		label=input_file,
		lp="767,687.5",
		pos="e,835.73,705.51 652.43,647.27 662.5,655.64 679.29,668.27 696,675 737.89,691.87 788.01,700.37 827.48,704.66"];
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		height=0.27778,
		label=filtered2sorted,
		pos="1060,405",
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	nthreads -> filtered2sorted	[_draw_="c 7 -#000000 B 13 930.45 628.91 933.52 624.12 937.27 617.87 940 612 959.63 569.82 955.88 555.85 974 513 988.16 479.5 987.11 467.43 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 992.5 515.6 0 37 8 -nthreads ",
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		lp="992.5,517.5",
		pos="e,1043.9,414.41 930.45,628.91 933.52,624.12 937.27,617.87 940,612 959.63,569.82 955.88,555.85 974,513 988.16,479.5 987.11,467.43 \
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	sam2bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 802.5 530.5 802.5 549.5 867.5 549.5 867.5 530.5 ",
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		rects="802.5,530.5,867.5,549.5",
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	nthreads -> sam2bam	[_draw_="c 7 -#000000 B 7 908.9 628.66 886.11 616.82 847.05 596.41 846 595 837.96 584.23 835.43 569.03 834.79 557.49 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 864.5 583.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="864.5,585",
		pos="e,834.6,549.18 908.9,628.66 886.11,616.82 847.05,596.41 846,595 837.96,584.23 835.43,569.03 834.79,557.49"];
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		height=0.27778,
		label=sort_bams,
		pos="867,495",
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	nthreads -> sort_bams	[_draw_="c 7 -#000000 B 10 919 628.84 910.02 616.22 893.16 590.94 884 567 875.25 544.12 879.54 536.6 873 513 872.92 512.73 872.85 512.46 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 902.5 560.6 0 37 8 -nthreads ",
		label=nthreads,
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		pos="e,870.16,504.23 919,628.84 910.02,616.22 893.16,590.94 884,567 875.25,544.12 879.54,536.6 873,513 872.92,512.73 872.85,512.46 872.77,\
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	nthreads -> "bowtie-se"	[_draw_="c 7 -#000000 B 10 911.36 628.5 905.59 625.3 898.68 621.97 892 620 857.31 609.76 846.89 616.55 811 612 767.41 606.48 717.7 598.59 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 684.25 590.55 676.94 591.81 683.44 595.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 829.5 605.6 0 37 8 -nthreads ",
		label=nthreads,
		lp="829.5,607.5",
		pos="e,675.45,591.56 911.36,628.5 905.59,625.3 898.68,621.97 892,620 857.31,609.76 846.89,616.55 811,612 767.41,606.48 717.7,598.59 683.73,\
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	sort_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 909.5 125.5 909.5 144.5 1012.5 144.5 1012.5 125.5 ",
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		height=0.27778,
		label=sort_dedup_bams,
		pos="961,135",
		rects="909.5,125.5,1012.5,144.5",
		width=1.4306];
	nthreads -> sort_dedup_bams	[_draw_="c 7 -#000000 B 22 927.89 628.81 931.15 618.84 936 601.4 936 586 936 586 936 586 936 381.5 936 367.16 935.14 361.99 943 350 946.31 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 954.5 380.6 0 37 8 -nthreads ",
		label=nthreads,
		lp="954.5,382.5",
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		height=0.27778,
		label=sort_dups_marked_bams,
		pos="876,270",
		rects="807,260.5,945,279.5",
		width=1.9167];
	nthreads -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 19 924.58 628.66 923.77 614.21 921.75 583.61 918 558 913.2 525.23 911.39 517.04 903 485 900.04 473.71 897.34 471.43 \
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		label=nthreads,
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		label=genome_ref_first_index_file,
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		fillcolor="#F3CEA1",
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		label=execute_pcr_bottleneck_coef,
		pos="1154,360",
		rects="1075,350.5,1233,369.5",
		width=2.1944];
	genome_sizes_file -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 10 1042.96 628.57 1062.85 621.06 1085 607.8 1085 586 1085 586 1085 586 1085 516.5 1085 516.26 1129.42 416.31 1146.98 \
376.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1149.07 378.12 1149.68 370.73 1144.59 376.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1127.5 493.1 0 59 12 -genome_sizes ",
		label=genome_sizes,
		lp="1127.5,495",
		pos="e,1150.3,369.35 1043,628.57 1062.9,621.06 1085,607.8 1085,586 1085,586 1085,586 1085,516.5 1085,516.26 1129.4,416.31 1147,376.8"];
	mapped_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 296.5 80.5 296.5 99.5 417.5 99.5 417.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 357 87.5 0 105 18 -mapped_reads_count ",
		height=0.27778,
		label=mapped_reads_count,
		pos="357,90",
		rects="296.5,80.5,417.5,99.5",
		width=1.6806];
	mapped_reads_count -> output_read_count_mapped	[_draw_="c 7 -#000000 B 7 296.84 81.62 260.58 76.91 213.52 70.32 172 63 160.75 61.02 148.67 58.6 137.39 56.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 138.18 53.88 130.82 54.81 137.15 58.67 ",
		pos="e,129.34,54.498 296.84,81.625 260.58,76.911 213.52,70.321 172,63 160.75,61.016 148.67,58.6 137.39,56.219"];
	remove_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 838 170.5 838 189.5 948 189.5 948 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 893 177.5 0 94 17 -remove_duplicates ",
		height=0.27778,
		label=remove_duplicates,
		pos="893,180",
		rects="838,170.5,948,189.5",
		width=1.5278];
	remove_duplicates -> sort_dedup_bams	[_draw_="c 7 -#000000 B 7 899.59 170.86 904.47 165.25 911.55 157.94 919 153 921.73 151.19 924.67 149.53 927.7 148 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 928.59 150.29 933.92 145.13 926.54 145.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 938 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="938,157.5",
		pos="e,935.3,144.5 899.59,170.86 904.47,165.25 911.55,157.94 919,153 921.73,151.19 924.67,149.53 927.7,148"];
	percent_mitochondrial_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 594 80.5 594 99.5 752 99.5 752 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 673 87.5 0 142 27 -percent_mitochondrial_reads ",
		height=0.27778,
		label=percent_mitochondrial_reads,
		pos="673,90",
		rects="594,80.5,752,99.5",
		width=2.1944];
	percent_mitochondrial_reads -> output_percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 7 607.42 80.51 570.78 75.64 524.31 69.27 483 63 468.4 60.78 452.65 58.24 438 55.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 438.78 53.45 431.47 54.71 437.97 58.28 ",
		pos="e,429.98,54.461 607.42,80.505 570.78,75.639 524.31,69.268 483,63 468.4,60.785 452.65,58.238 438,55.801"];
	execute_pcr_bottleneck_coef -> output_pbc_files	[_draw_="c 7 -#000000 B 13 1203.72 350.58 1221.4 344.49 1237 334.01 1237 316 1237 316 1237 316 1237 224 1237 218.93 1239.91 218 1244 215 \
1279.94 188.65 1567.2 90.44 1665.87 57.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1666.45 59.52 1672.3 54.96 1664.88 54.88 ",
		pos="e,1673.7,54.479 1203.7,350.58 1221.4,344.49 1237,334.01 1237,316 1237,316 1237,316 1237,224 1237,218.93 1239.9,218 1244,215 1279.9,\
188.65 1567.2,90.439 1665.9,57.131"];
	index_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 905.5 80.5 905.5 99.5 1016.5 99.5 1016.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 961 87.5 0 95 16 -index_dedup_bams ",
		height=0.27778,
		label=index_dedup_bams,
		pos="961,90",
		rects="905.5,80.5,1016.5,99.5",
		width=1.5417];
	index_dedup_bams -> output_data_sorted_dedup_bam_files	[_draw_="c 7 -#000000 B 4 972.66 80.5 980.9 74.5 992.12 66.32 1001.57 59.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1002.93 61.47 1007.14 55.37 1000.04 57.51 ",
		pos="e,1008.4,54.478 972.66,80.505 980.9,74.497 992.12,66.32 1001.6,59.435"];
	filtered2sorted -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 7 1063.04 395.71 1065.61 389.88 1069.86 382.35 1076 378 1078.72 376.07 1081.62 374.35 1084.64 372.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1085.56 375.1 1090.97 370.02 1083.58 370.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1108 380.6 0 64 15 -input_bam_files ",
		label=input_bam_files,
		lp="1108,382.5",
		pos="e,1092.4,369.41 1063,395.71 1065.6,389.88 1069.9,382.35 1076,378 1078.7,376.07 1081.6,374.35 1084.6,372.83"];
	"preseq-c-curve"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1181.5 125.5 1181.5 144.5 1270.5 144.5 1270.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1226 132.5 0 73 14 -preseq-c-curve ",
		height=0.27778,
		label="preseq-c-curve",
		pos="1226,135",
		rects="1181.5,125.5,1270.5,144.5",
		width=1.2361];
	filtered2sorted -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 10 1060 395.76 1060 387.1 1060 373.09 1060 361 1060 361 1060 361 1060 179 1060 155.22 1124.65 144.37 1173.26 139.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1173.27 142.04 1180.01 138.95 1172.81 137.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1094 268.1 0 68 17 -input_sorted_file ",
		label=input_sorted_file,
		lp="1094,270",
		pos="e,1181.5,138.81 1060,395.76 1060,387.1 1060,373.09 1060,361 1060,361 1060,361 1060,179 1060,155.22 1124.6,144.37 1173.3,139.58"];
	index_filtered_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 943 350.5 943 369.5 1053 369.5 1053 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 998 357.5 0 94 18 -index_filtered_bam ",
		height=0.27778,
		label=index_filtered_bam,
		pos="998,360",
		rects="943,350.5,1053,369.5",
		width=1.5278];
	filtered2sorted -> index_filtered_bam	[_draw_="c 7 -#000000 B 7 1033.09 395.59 1027.8 393.27 1022.51 390.43 1018 387 1014.03 383.98 1010.44 379.99 1007.43 376.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1009.55 374.81 1003.55 370.45 1005.53 377.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1037 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="1037,382.5",
		pos="e,1002.7,369.21 1033.1,395.59 1027.8,393.27 1022.5,390.43 1018,387 1014,383.98 1010.4,379.99 1007.4,376.05"];
	sam2bam -> sort_bams	[_draw_="c 7 -#000000 B 7 834.13 530.63 833.99 525.19 834.63 518.18 838 513 838.77 511.82 839.65 510.72 840.61 509.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 841.89 511.8 845.69 505.43 838.75 508.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 857 515.6 0 38 10 -input_file ",
		label=input_file,
		lp="857,517.5",
		pos="e,846.85,504.46 834.13,530.63 833.99,525.19 834.63,518.18 838,513 838.77,511.82 839.65,510.72 840.61,509.68"];
	"filter-unmapped"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1012.5 440.5 1012.5 459.5 1107.5 459.5 1107.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1060 447.5 0 79 15 -filter-unmapped ",
		height=0.27778,
		label="filter-unmapped",
		pos="1060,450",
		rects="1012.5,440.5,1107.5,459.5",
		width=1.3194];
	sort_bams -> "filter-unmapped"	[_draw_="c 7 -#000000 B 7 895.7 485.61 914.92 480.16 940.85 473.14 964 468 977.14 465.08 991.37 462.34 1004.76 459.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1005 462.38 1011.47 458.75 1004.15 457.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 983 470.6 0 38 10 -input_file ",
		label=input_file,
		lp="983,472.5",
		pos="e,1013,458.49 895.7,485.61 914.92,480.16 940.85,473.14 964,468 977.14,465.08 991.37,462.34 1004.8,459.94"];
	index_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 691 170.5 691 189.5 767 189.5 767 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 729 177.5 0 60 10 -index_bams ",
		height=0.27778,
		label=index_bams,
		pos="729,180",
		rects="691,170.5,767,189.5",
		width=1.0556];
	sort_bams -> index_bams	[_draw_="c 7 -#000000 B 13 865.13 485.54 863.8 480.33 861.76 473.59 859 468 840.67 430.84 751 357.44 751 316 751 316 751 316 751 224 751 \
213.86 746.09 203.7 740.91 195.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 743.16 194.74 737.09 190.48 739.18 197.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 777 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="777,337.5",
		pos="e,736.2,189.25 865.13,485.54 863.8,480.33 861.76,473.59 859,468 840.67,430.84 751,357.44 751,316 751,316 751,316 751,224 751,213.86 \
746.09,203.7 740.91,195.8"];
	bam_idxstats	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 676.5 125.5 676.5 144.5 759.5 144.5 759.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 718 132.5 0 67 12 -bam_idxstats ",
		height=0.27778,
		label=bam_idxstats,
		pos="718,135",
		rects="676.5,125.5,759.5,144.5",
		width=1.1528];
	bam_idxstats -> percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 709.32 125.71 703.22 119.88 694.91 111.93 687.77 105.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 689.5 103.38 682.74 100.31 686.11 106.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 715.5 110.6 0 33 8 -idxstats ",
		label=idxstats,
		lp="715.5,112.5",
		pos="e,681.65,99.265 709.32,125.71 703.22,119.88 694.91,111.93 687.77,105.12"];
	"bowtie-se" -> output_bowtie_log	[_draw_="c 7 -#000000 B 13 610.59 584.36 578.14 582.82 533 574.63 533 541 533 541 533 541 533 89 533 61.18 311.29 68.38 284 63 275.9 61.4 \
267.3 59.18 259.28 56.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 260.02 54.54 252.61 54.89 258.62 59.23 ",
		pos="e,251.16,54.455 610.59,584.36 578.14,582.82 533,574.63 533,541 533,541 533,541 533,89 533,61.183 311.29,68.379 284,63 275.9,61.404 \
267.3,59.183 259.28,56.873"];
	"bowtie-se" -> mapped_reads_count	[_draw_="c 7 -#000000 B 10 610.91 584.42 548.97 584.35 419 579.61 419 541 419 541 419 541 419 134 419 119.52 407.44 109.53 394.31 102.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 395.67 100.78 388.29 100.1 393.64 105.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 441.5 335.6 0 45 10 -bowtie_log ",
		label=bowtie_log,
		lp="441.5,337.5",
		pos="e,386.91,99.47 610.91,584.42 548.97,584.35 419,579.61 419,541 419,541 419,541 419,134 419,119.52 407.44,109.53 394.31,102.85"];
	"bowtie-se" -> sam2bam	[_draw_="c 7 -#000000 B 4 675.14 576.8 707.95 569.45 758.98 558.03 794.52 550.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 794.99 552.47 801.28 548.55 793.92 547.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 775 560.6 0 38 10 -input_file ",
		label=input_file,
		lp="775,562.5",
		pos="e,802.76,548.22 675.14,576.8 707.95,569.45 758.98,558.03 794.52,550.06"];
	"preseq-c-curve" -> output_preseq_c_curve_files	[_draw_="c 7 -#000000 B 13 1270.3 131.01 1280.42 128.43 1290.41 124.12 1298 117 1313.58 102.38 1295.12 84.11 1312 71 1327.46 58.99 1468.58 \
65.46 1488 63 1500.75 61.38 1514.47 58.82 1526.93 56.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1527.12 58.64 1533.44 54.75 1526.08 53.85 ",
		pos="e,1534.9,54.429 1270.3,131.01 1280.4,128.43 1290.4,124.12 1298,117 1313.6,102.38 1295.1,84.109 1312,71 1327.5,58.992 1468.6,65.463 \
1488,63 1500.7,61.384 1514.5,58.822 1526.9,56.174"];
	percent_uniq_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1186 80.5 1186 99.5 1298 99.5 1298 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1242 87.5 0 96 18 -percent_uniq_reads ",
		height=0.27778,
		label=percent_uniq_reads,
		pos="1242,90",
		rects="1186,80.5,1298,99.5",
		width=1.5556];
	"preseq-c-curve" -> percent_uniq_reads	[_draw_="c 7 -#000000 B 7 1213.65 125.55 1207.95 120.57 1203.2 114.07 1207 108 1207.76 106.78 1208.64 105.64 1209.61 104.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1210.95 106.66 1214.82 100.33 1207.85 102.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1254 110.6 0 94 22 -preseq_c_curve_outfile ",
		label=preseq_c_curve_outfile,
		lp="1254,112.5",
		pos="e,1216,99.375 1213.7,125.55 1208,120.57 1203.2,114.07 1207,108 1207.8,106.78 1208.6,105.64 1209.6,104.59"];
	index_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 803 215.5 803 234.5 949 234.5 949 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 876 222.5 0 130 22 -index_dups_marked_bams ",
		height=0.27778,
		label=index_dups_marked_bams,
		pos="876,225",
		rects="803,215.5,949,234.5",
		width=2.0278];
	index_dups_marked_bams -> output_data_sorted_dups_marked_bam_files	[_draw_="c 7 -#000000 B 10 850.17 215.63 835.09 208.94 819 197.86 819 181 819 181 819 181 819 89 819 79.24 814.71 69.31 810.11 61.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 812.22 60.19 806.37 55.63 808.1 62.85 ",
		pos="e,805.55,54.361 850.17,215.63 835.09,208.94 819,197.86 819,181 819,181 819,181 819,89 819,79.244 814.71,69.306 810.11,61.445"];
	index_dups_marked_bams -> remove_duplicates	[_draw_="c 7 -#000000 B 4 879.28 215.71 881.39 210.36 884.22 203.22 886.75 196.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 888.88 198.08 889.18 190.67 884.32 196.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 905 200.6 0 38 10 -input_file ",
		label=input_file,
		lp="905,202.5",
		pos="e,889.73,189.27 879.28,215.71 881.39,210.36 884.22,203.22 886.75,196.81"];
	"filter-unmapped" -> filtered2sorted	[_draw_="c 7 -#000000 B 4 1060 440.71 1060 435.59 1060 428.85 1060 422.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1062.45 422.78 1060 415.78 1057.55 422.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1079 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="1079,427.5",
		pos="e,1060,414.27 1060,440.71 1060,435.59 1060,428.85 1060,422.67"];
	mark_duplicates -> output_picard_mark_duplicates_files	[_draw_="c 7 -#000000 B 10 800.8 305.75 794.38 297.52 786 284.25 786 271 786 271 786 271 786 89 786 85.12 695.04 67.41 634 55.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 634.79 53.62 627.46 54.74 633.89 58.43 ",
		pos="e,625.97,54.459 800.8,305.75 794.38,297.52 786,284.25 786,271 786,271 786,271 786,89 786,85.116 695.04,67.406 634,55.961"];
	mark_duplicates -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 4 821.43 305.5 831.21 299.32 844.63 290.84 855.71 283.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 856.71 286.1 861.31 280.29 854.09 281.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 867 290.6 0 38 10 -input_file ",
		label=input_file,
		lp="867,292.5",
		pos="e,862.59,279.48 821.43,305.5 831.21,299.32 844.63,290.84 855.71,283.83"];
	sort_dedup_bams -> index_dedup_bams	[_draw_="c 7 -#000000 B 4 961 125.71 961 120.59 961 113.85 961 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 963.45 107.78 961 100.78 958.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 980 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="980,112.5",
		pos="e,961,99.265 961,125.71 961,120.59 961,113.85 961,107.67"];
	mapped_filtered_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1020.5 80.5 1020.5 99.5 1181.5 99.5 1181.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1101 87.5 0 145 27 -mapped_filtered_reads_count ",
		height=0.27778,
		label=mapped_filtered_reads_count,
		pos="1101,90",
		rects="1020.5,80.5,1181.5,99.5",
		width=2.2361];
	sort_dedup_bams -> mapped_filtered_reads_count	[_draw_="c 7 -#000000 B 4 988.66 125.5 1010.61 118.76 1041.47 109.28 1065.29 101.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1065.98 104.32 1071.95 99.92 1064.54 99.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1073 110.6 0 60 14 -input_bam_file ",
		label=input_bam_file,
		lp="1073,112.5",
		pos="e,1073.4,99.478 988.66,125.5 1010.6,118.76 1041.5,109.28 1065.3,101.97"];
	index_bams -> bam_idxstats	[_draw_="c 7 -#000000 B 4 726.88 170.71 725.54 165.47 723.76 158.53 722.15 152.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 724.6 151.91 720.49 145.73 719.85 153.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 733.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="733.5,157.5",
		pos="e,720.11,144.27 726.88,170.71 725.54,165.47 723.76,158.53 722.15,152.24"];
	percent_uniq_reads -> output_percentage_uniq_reads	[_draw_="c 7 -#000000 B 7 1268.63 80.52 1278.73 77.39 1290.36 73.91 1301 71 1319.93 65.82 1340.97 60.62 1359.07 56.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1359.44 58.74 1365.69 54.74 1358.31 53.97 ",
		pos="e,1367.2,54.395 1268.6,80.517 1278.7,77.394 1290.4,73.911 1301,71 1319.9,65.819 1341,60.616 1359.1,56.308"];
	index_filtered_bam -> mark_duplicates	[_draw_="c 7 -#000000 B 7 971.52 350.61 953.47 345.1 928.95 338 907 333 893.43 329.91 878.69 327.09 864.84 324.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 865.6 322.32 858.29 323.56 864.78 327.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 958 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="958,337.5",
		pos="e,856.8,323.3 971.52,350.61 953.47,345.1 928.95,338 907,333 893.43,329.91 878.69,327.09 864.84,324.67"];
	extract_basename_2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1088.5 628.5 1088.5 647.5 1207.5 647.5 1207.5 628.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1148 635.5 0 103 18 -extract_basename_2 ",
		height=0.27778,
		label=extract_basename_2,
		pos="1148,638",
		rects="1088.5,628.5,1207.5,647.5",
		width=1.6528];
	extract_basename_2 -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 13 1201.98 628.64 1212.02 624.94 1221.64 619.63 1229 612 1237.31 603.39 1236 597.97 1236 586 1236 586 1236 586 1236 \
404 1236 388.67 1224.62 378.79 1210.34 372.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1211.47 370.25 1204.06 369.97 1209.68 374.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1284.5 493.1 0 97 22 -input_output_filenames ",
		label=input_output_filenames,
		lp="1284.5,495",
		pos="e,1202.6,369.42 1202,628.64 1212,624.94 1221.6,619.63 1229,612 1237.3,603.39 1236,597.97 1236,586 1236,586 1236,586 1236,404 1236,\
388.67 1224.6,378.79 1210.3,372.43"];
	extract_basename_2 -> "bowtie-se"	[_draw_="c 7 -#000000 B 10 1116.59 628.55 1103.78 625.4 1088.77 622.09 1075 620 1026.54 612.64 1013.87 615.75 965 612 863.79 604.23 744.74 \
594.45 683.67 589.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 684.13 586.97 676.95 588.83 683.73 591.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 998.5 605.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="998.5,607.5",
		pos="e,675.44,588.71 1116.6,628.55 1103.8,625.4 1088.8,622.09 1075,620 1026.5,612.64 1013.9,615.75 965,612 863.79,604.23 744.74,594.45 \
683.67,589.39"];
	extract_basename_2 -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 16 1182 628.59 1202.62 621.22 1225 608.13 1225 586 1225 586 1225 586 1225 426.5 1225 395.65 1248 391.85 1248 361 \
1248 361 1248 361 1248 179 1248 168.86 1243.09 158.7 1237.91 150.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1240.16 149.74 1234.09 145.48 1236.18 152.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1289.5 380.6 0 91 20 -output_file_basename ",
		label=output_file_basename,
		lp="1289.5,382.5",
		pos="e,1233.2,144.25 1182,628.59 1202.6,621.22 1225,608.13 1225,586 1225,586 1225,586 1225,426.5 1225,395.65 1248,391.85 1248,361 1248,\
361 1248,361 1248,179 1248,168.86 1243.1,158.7 1237.9,150.8"];
	extract_basename_2 -> "filter-unmapped"	[_draw_="c 7 -#000000 B 10 1148.79 628.71 1149.68 618.62 1151 601.08 1151 586 1151 586 1151 586 1151 494 1151 474.88 1134.37 464.25 1115.34 \
458.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1116.22 456.05 1108.83 456.56 1114.93 460.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1184.5 538.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="1184.5,540",
		pos="e,1107.4,456.16 1148.8,628.71 1149.7,618.62 1151,601.08 1151,586 1151,586 1151,586 1151,494 1151,474.88 1134.4,464.25 1115.3,458.34"];
	extract_basename_2 -> mark_duplicates	[_draw_="c 7 -#000000 B 13 1139.55 628.57 1126.64 615.6 1101.36 589.86 1081 567 1043 524.34 1038.86 508.93 999 468 956.58 424.45 943.8 415.56 \
896 378 873.17 360.06 845.63 341.06 827.52 328.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 829.27 327.12 822.09 325.27 826.55 331.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1040.5 470.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="1040.5,472.5",
		pos="e,820.83,324.43 1139.5,628.57 1126.6,615.6 1101.4,589.86 1081,567 1043,524.34 1038.9,508.93 999,468 956.58,424.45 943.8,415.56 896,\
378 873.17,360.06 845.63,341.06 827.52,328.89"];
	extract_basename_1 -> extract_basename_2	[_draw_="c 7 -#000000 B 7 954.39 701.92 989.98 696.66 1035.79 688.1 1075 675 1093.09 668.96 1112.4 659.27 1126.62 651.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1127.72 653.67 1132.63 648.11 1125.32 649.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1064 685.6 0 36 9 -file_path ",
		label=file_path,
		lp="1064,687.5",
		pos="e,1133.9,647.37 954.39,701.92 989.98,696.66 1035.8,688.1 1075,675 1093.1,668.96 1112.4,659.27 1126.6,651.47"];
	mapped_filtered_reads_count -> output_read_count_mapped_filtered	[_draw_="c 7 -#000000 B 4 1124.51 80.5 1142.85 73.88 1168.49 64.61 1188.58 57.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1189.36 59.68 1195.11 54.99 1187.7 55.07 ",
		pos="e,1196.5,54.478 1124.5,80.505 1142.8,73.879 1168.5,64.614 1188.6,57.353"];
	sort_dups_marked_bams -> index_dups_marked_bams	[_draw_="c 7 -#000000 B 4 876 260.71 876 255.59 876 248.85 876 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 878.45 242.78 876 235.78 873.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 895 245.6 0 38 10 -input_file ",
		label=input_file,
		lp="895,247.5",
		pos="e,876,234.27 876,260.71 876,255.59 876,248.85 876,242.67"];
}