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	picard_java_opts -> mark_duplicates	[_draw_="c 7 -#000000 B 13 416.14 718.57 425.18 715.67 435.5 712.52 445 710 479.29 700.89 601 711.48 601 676 601 676 601 676 601 359 601 \
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	input_fastq_read1_files -> "bowtie-pe"	[_draw_="c 7 -#000000 B 7 1020.43 718.53 1006.93 712.34 994.11 703.26 1002 693 1007.8 685.46 1016.54 681.02 1025.71 678.46 ",
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	extract_basename_1	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1141.5 790.5 1141.5 809.5 1260.5 809.5 1260.5 790.5 ",
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		label=input_file,
		lp="1172,777.5",
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	genome_sizes_file -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 10 1245.07 718.52 1280.48 697.34 1366 638.45 1366 563.5 1366 563.5 1366 563.5 1366 494 1366 485.3 1366.41 475.62 \
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		label=genome_sizes,
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	nthreads -> "bowtie-pe"	[_draw_="c 7 -#000000 B 10 1128.37 718.54 1120.44 713.85 1110.56 707.8 1102 702 1096.48 698.26 1095.39 696.93 1090 693 1088.27 691.74 1086.46 \
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		height=0.27778,
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	nthreads -> filtered2sorted	[_draw_="c 7 -#000000 B 13 1157.48 718.54 1163.37 715.42 1170.34 712.14 1177 710 1213.39 698.3 1256 714.22 1256 676 1256 676 1256 676 1256 \
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	nthreads -> sort_bams	[_draw_="c 7 -#000000 B 16 1157.5 718.58 1163.38 715.48 1170.36 712.19 1177 710 1196.71 703.51 1209.64 717.88 1223 702 1225.57 698.94 1223.44 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1233.5 650.6 0 37 8 -nthreads ",
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	nthreads -> sort_dedup_bams	[_draw_="c 7 -#000000 B 16 1130.07 718.58 1124.19 715.23 1117 711.75 1110 710 1051.79 695.43 629.81 706.84 570 702 530.59 698.81 394 715.54 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 412.5 425.6 0 37 8 -nthreads ",
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		height=0.27778,
		label=sort_masked_bams,
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	nthreads -> sort_masked_bams	[_draw_="c 7 -#000000 B 16 1130.06 718.61 1124.18 715.26 1116.99 711.78 1110 710 1038.06 691.64 848.24 719.13 776 702 749.69 695.76 721 703.04 \
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		width=1.9167];
	nthreads -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 16 1130.06 718.6 1124.19 715.25 1117 711.77 1110 710 1068.85 699.57 770.3 705.64 728 702 689.71 698.7 557 714.44 \
557 676 557 676 557 676 557 314 557 305.31 557 295.63 557 287.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 559.45 287.76 557 280.76 554.55 287.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 575.5 493.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="575.5,495",
		pos="e,557,279.24 1130.1,718.6 1124.2,715.25 1117,711.77 1110,710 1068.8,699.57 770.3,705.64 728,702 689.71,698.7 557,714.44 557,676 \
557,676 557,676 557,314 557,305.31 557,295.63 557,287.65"];
	sam2bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1110.5 620.5 1110.5 639.5 1175.5 639.5 1175.5 620.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1143 627.5 0 49 7 -sam2bam ",
		height=0.27778,
		label=sam2bam,
		pos="1143,630",
		rects="1110.5,620.5,1175.5,639.5",
		width=0.90278];
	nthreads -> sam2bam	[_draw_="c 7 -#000000 B 4 1143 718.82 1143 703.17 1143 668.71 1143 647.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1145.45 647.95 1143 640.95 1140.55 647.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1161.5 673.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="1161.5,675",
		pos="e,1143,639.44 1143,718.82 1143,703.17 1143,668.71 1143,647.91"];
	remove_encode_blacklist	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 775.5 440.5 775.5 459.5 916.5 459.5 916.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 846 447.5 0 125 23 -remove_encode_blacklist ",
		height=0.27778,
		label=remove_encode_blacklist,
		pos="846,450",
		rects="775.5,440.5,916.5,459.5",
		width=1.9583];
	ENCODE_blacklist_bedfile -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 10 649.26 718.59 694.5 707.58 766 688.25 766 676 766 676 766 676 766 494 766 478.69 777.5 468.81 791.79 462.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 792.44 464.82 798.06 459.98 790.64 460.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 769 583.1 0 6 1 -b ",
		label=b,
		lp="769,585",
		pos="e,799.46,459.42 649.26,718.59 694.5,707.58 766,688.25 766,676 766,676 766,676 766,494 766,478.69 777.5,468.81 791.79,462.44"];
	picard_jar_path -> mark_duplicates	[_draw_="c 7 -#000000 B 13 512.63 718.57 521.33 715.47 531.53 712.18 541 710 590.46 698.63 650 726.75 650 676 650 676 650 676 650 359 650 \
349.24 654.29 339.31 658.89 331.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 660.9 332.85 662.63 325.63 656.78 330.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 681.5 515.6 0 63 15 -picard_jar_path ",
		label=picard_jar_path,
		lp="681.5,517.5",
		pos="e,663.45,324.36 512.63,718.57 521.33,715.47 531.53,712.18 541,710 590.46,698.63 650,726.75 650,676 650,676 650,676 650,359 650,349.24 \
654.29,339.31 658.89,331.45"];
	input_fastq_read2_files -> "bowtie-pe"	[_draw_="c 7 -#000000 B 7 760.51 718.55 767.36 710.38 778.93 698.46 792 693 832.93 675.89 959.2 674.68 1025.07 675.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1025.02 677.73 1032.05 675.36 1025.08 672.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 837.5 695.6 0 91 22 -input_fastq_read2_file ",
		label=input_fastq_read2_file,
		lp="837.5,697.5",
		pos="e,1033.6,675.38 760.51,718.55 767.36,710.38 778.93,698.46 792,693 832.93,675.89 959.2,674.68 1025.1,675.29"];
	genome_ref_first_index_file -> "bowtie-pe"	[_draw_="c 7 -#000000 B 7 891.71 718.5 886.17 710.99 880.51 700.13 887 693 896.13 682.96 975.49 678.71 1025.43 677.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1025.35 679.48 1032.27 676.81 1025.19 674.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 942.5 695.6 0 111 27 -genome_ref_first_index_file ",
		label=genome_ref_first_index_file,
		lp="942.5,697.5",
		pos="e,1033.8,676.76 891.71,718.5 886.17,710.99 880.51,700.13 887,693 896.13,682.96 975.49,678.71 1025.4,677.03"];
	"bowtie-pe" -> output_bowtie_log	[_draw_="c 7 -#000000 B 10 1064.17 665.8 1062.4 657.19 1060 643.21 1060 631 1060 631 1060 631 1060 471.5 1060 301.65 950.71 114.97 916.87 \
61.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 919.09 60.15 913.26 55.56 914.95 62.78 ",
		pos="e,912.45,54.283 1064.2,665.8 1062.4,657.19 1060,643.21 1060,631 1060,631 1060,631 1060,471.5 1060,301.65 950.71,114.97 916.87,61.23"];
	mapped_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1179.5 80.5 1179.5 99.5 1300.5 99.5 1300.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1240 87.5 0 105 18 -mapped_reads_count ",
		height=0.27778,
		label=mapped_reads_count,
		pos="1240,90",
		rects="1179.5,80.5,1300.5,99.5",
		width=1.6806];
	"bowtie-pe" -> mapped_reads_count	[_draw_="c 7 -#000000 B 13 1066.66 665.71 1068.12 648.62 1072.04 608.26 1079 575 1099.28 478.08 1141 460.02 1141 361 1141 361 1141 361 1141 \
134 1141 121.09 1169.66 109.63 1196.14 101.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1196.74 104.16 1202.8 99.89 1195.4 99.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1162.5 380.6 0 45 10 -bowtie_log ",
		label=bowtie_log,
		lp="1162.5,382.5",
		pos="e,1204.3,99.473 1066.7,665.71 1068.1,648.62 1072,608.26 1079,575 1099.3,478.08 1141,460.02 1141,361 1141,361 1141,361 1141,134 1141,\
121.09 1169.7,109.63 1196.1,101.79"];
	"bowtie-pe" -> sam2bam	[_draw_="c 7 -#000000 B 7 1075.94 665.54 1082.71 660.06 1092.02 653.04 1101 648 1104.42 646.08 1108.1 644.26 1111.81 642.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1112.54 644.93 1118.01 639.92 1110.61 640.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1120 650.6 0 38 10 -input_file ",
		label=input_file,
		lp="1120,652.5",
		pos="e,1119.4,639.33 1075.9,665.54 1082.7,660.06 1092,653.04 1101,648 1104.4,646.08 1108.1,644.26 1111.8,642.58"];
	index_filtered_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1165 440.5 1165 459.5 1275 459.5 1275 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1220 447.5 0 94 18 -index_filtered_bam ",
		height=0.27778,
		label=index_filtered_bam,
		pos="1220,450",
		rects="1165,440.5,1275,459.5",
		width=1.5278];
	index_masked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 658.5 350.5 658.5 369.5 777.5 369.5 777.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 718 357.5 0 103 17 -index_masked_bams ",
		height=0.27778,
		label=index_masked_bams,
		pos="718,360",
		rects="658.5,350.5,777.5,369.5",
		width=1.6528];
	index_masked_bams -> mark_duplicates	[_draw_="c 7 -#000000 B 4 708.75 350.71 702.1 344.76 693.01 336.61 685.29 329.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 687.2 328.12 680.35 325.28 683.93 331.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 717 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="717,337.5",
		pos="e,679.23,324.27 708.75,350.71 702.1,344.76 693.01,336.61 685.29,329.7"];
	bam_idxstats	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1050.5 125.5 1050.5 144.5 1133.5 144.5 1133.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1092 132.5 0 67 12 -bam_idxstats ",
		height=0.27778,
		label=bam_idxstats,
		pos="1092,135",
		rects="1050.5,125.5,1133.5,144.5",
		width=1.1528];
	percent_mitochondrial_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1017 80.5 1017 99.5 1175 99.5 1175 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1096 87.5 0 142 27 -percent_mitochondrial_reads ",
		height=0.27778,
		label=percent_mitochondrial_reads,
		pos="1096,90",
		rects="1017,80.5,1175,99.5",
		width=2.1944];
	bam_idxstats -> percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 1092.77 125.71 1093.25 120.59 1093.87 113.85 1094.45 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1096.88 107.97 1095.09 100.77 1092 107.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1110.5 110.6 0 33 8 -idxstats ",
		label=idxstats,
		lp="1110.5,112.5",
		pos="e,1095.2,99.265 1092.8,125.71 1093.2,120.59 1093.9,113.85 1094.4,107.67"];
	mapped_reads_count -> output_read_count_mapped	[_draw_="c 7 -#000000 B 4 1240 80.71 1240 75.59 1240 68.85 1240 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1242.45 62.78 1240 55.78 1237.55 62.78 ",
		pos="e,1240,54.265 1240,80.709 1240,75.593 1240,68.848 1240,62.666"];
	index_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1055 170.5 1055 189.5 1131 189.5 1131 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1093 177.5 0 60 10 -index_bams ",
		height=0.27778,
		label=index_bams,
		pos="1093,180",
		rects="1055,170.5,1131,189.5",
		width=1.0556];
	index_bams -> bam_idxstats	[_draw_="c 7 -#000000 B 4 1092.81 170.71 1092.69 165.59 1092.53 158.85 1092.39 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1094.84 152.72 1092.23 145.78 1089.94 152.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1101.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1101.5,157.5",
		pos="e,1092.2,144.27 1092.8,170.71 1092.7,165.59 1092.5,158.85 1092.4,152.67"];
	masked_file_basename	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 780.5 395.5 780.5 414.5 911.5 414.5 911.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 846 402.5 0 115 20 -masked_file_basename ",
		height=0.27778,
		label=masked_file_basename,
		pos="846,405",
		rects="780.5,395.5,911.5,414.5",
		width=1.8194];
	masked_file_basename -> mark_duplicates	[_draw_="c 7 -#000000 B 10 837.68 395.73 825.75 384.24 802.72 363.35 780 350 762.28 339.59 756.56 339.32 737 333 729.87 330.7 722.24 328.51 \
714.76 326.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 715.61 324.2 708.22 324.81 714.37 328.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 840.5 358.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="840.5,360",
		pos="e,706.75,324.42 837.68,395.73 825.75,384.24 802.72,363.35 780,350 762.28,339.59 756.56,339.32 737,333 729.87,330.7 722.24,328.51 \
714.76,326.51"];
	filtered2sorted -> index_filtered_bam	[_draw_="c 7 -#000000 B 7 1251.99 485.5 1247.85 483.05 1243.59 480.17 1240 477 1236.46 473.88 1233.12 470.05 1230.21 466.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1232.2 464.88 1226.12 460.63 1228.23 467.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1259 470.6 0 38 10 -input_file ",
		label=input_file,
		lp="1259,472.5",
		pos="e,1225.2,459.41 1252,485.5 1247.9,483.05 1243.6,480.17 1240,477 1236.5,473.88 1233.1,470.05 1230.2,466.31"];
	filtered2sorted -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 7 1225.18 488.75 1178.74 483.27 1103.25 474.56 1038 468 1000.7 464.25 959.28 460.53 924.49 457.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 924.95 455.11 917.76 456.95 924.53 459.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1123 470.6 0 6 1 -a ",
		label=a,
		lp="1123,472.5",
		pos="e,916.26,456.82 1225.2,488.75 1178.7,483.27 1103.3,474.56 1038,468 1000.7,464.25 959.28,460.53 924.49,457.53"];
	filtered2sorted -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 7 1277.49 485.53 1284.33 478.88 1293.51 470.36 1298 468 1302.25 465.76 1306.81 463.81 1311.48 462.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1312.1 464.49 1317.97 459.96 1310.56 459.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1330 470.6 0 64 15 -input_bam_files ",
		label=input_bam_files,
		lp="1330,472.5",
		pos="e,1319.4,459.49 1277.5,485.53 1284.3,478.88 1293.5,470.36 1298,468 1302.3,465.76 1306.8,463.81 1311.5,462.11"];
	"preseq-c-curve"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1303.5 125.5 1303.5 144.5 1392.5 144.5 1392.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1348 132.5 0 73 14 -preseq-c-curve ",
		height=0.27778,
		label="preseq-c-curve",
		pos="1348,135",
		rects="1303.5,125.5,1392.5,144.5",
		width=1.2361];
	filtered2sorted -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 10 1273.11 485.66 1276.92 477.16 1282 463.48 1282 451 1282 451 1282 451 1282 179 1282 164.23 1293.75 154.27 1307.33 \
147.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1308.16 150 1313.61 144.97 1306.21 145.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1316 313.1 0 68 17 -input_sorted_file ",
		label=input_sorted_file,
		lp="1316,315",
		pos="e,1315,144.37 1273.1,485.66 1276.9,477.16 1282,463.48 1282,451 1282,451 1282,451 1282,179 1282,164.23 1293.7,154.27 1307.3,147.69"];
	index_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 138.5 80.5 138.5 99.5 249.5 99.5 249.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 194 87.5 0 95 16 -index_dedup_bams ",
		height=0.27778,
		label=index_dedup_bams,
		pos="194,90",
		rects="138.5,80.5,249.5,99.5",
		width=1.5417];
	index_dedup_bams -> output_data_sorted_dedup_bam_files	[_draw_="c 7 -#000000 B 4 178.59 80.5 167.16 74.2 151.4 65.51 138.55 58.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 140.02 56.44 132.7 55.21 137.65 60.73 ",
		pos="e,131.38,54.478 178.59,80.505 167.16,74.203 151.4,65.514 138.55,58.432"];
	remove_encode_blacklist -> masked_file_basename	[_draw_="c 7 -#000000 B 4 846 440.71 846 435.59 846 428.85 846 422.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 848.45 422.78 846 415.78 843.55 422.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 865 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="865,427.5",
		pos="e,846,414.27 846,440.71 846,435.59 846,428.85 846,422.67"];
	remove_encode_blacklist -> sort_masked_bams	[_draw_="c 7 -#000000 B 4 821.3 440.5 801.87 433.82 774.63 424.45 753.44 417.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 754.49 414.93 747.08 414.97 752.9 419.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 813 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="813,427.5",
		pos="e,745.64,414.48 821.3,440.5 801.87,433.82 774.63,424.45 753.44,417.16"];
	sort_bams -> index_bams	[_draw_="c 7 -#000000 B 10 1180.07 575.58 1145.12 565.91 1094 550.18 1094 541 1094 541 1094 541 1094 224 1094 215.31 1093.79 205.62 1093.57 \
197.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1096.02 197.68 1093.35 190.75 1091.12 197.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1113 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="1113,382.5",
		pos="e,1093.3,189.24 1180.1,575.58 1145.1,565.91 1094,550.18 1094,541 1094,541 1094,541 1094,224 1094,215.31 1093.8,205.62 1093.6,197.65"];
	"filter-unmapped"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1263.5 530.5 1263.5 549.5 1358.5 549.5 1358.5 530.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1311 537.5 0 79 15 -filter-unmapped ",
		height=0.27778,
		label="filter-unmapped",
		pos="1311,540",
		rects="1263.5,530.5,1358.5,549.5",
		width=1.3194];
	sort_bams -> "filter-unmapped"	[_draw_="c 7 -#000000 B 4 1231.56 575.5 1246.47 569.03 1267.2 560.02 1283.74 552.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1284.65 555.12 1290.09 550.08 1282.7 550.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1289 560.6 0 38 10 -input_file ",
		label=input_file,
		lp="1289,562.5",
		pos="e,1291.5,549.48 1231.6,575.5 1246.5,569.03 1267.2,560.02 1283.7,552.84"];
	extract_basename_2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1300.5 718.5 1300.5 737.5 1419.5 737.5 1419.5 718.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1360 725.5 0 103 18 -extract_basename_2 ",
		height=0.27778,
		label=extract_basename_2,
		pos="1360,728",
		rects="1300.5,718.5,1419.5,737.5",
		width=1.6528];
	extract_basename_2 -> "bowtie-pe"	[_draw_="c 7 -#000000 B 10 1331.2 718.58 1319.45 715.43 1305.67 712.11 1293 710 1250.33 702.88 1238.84 708.03 1196 702 1165.77 697.74 1131.96 \
690.92 1106.41 685.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1107.25 683.01 1099.89 683.89 1106.2 687.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1229.5 695.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="1229.5,697.5",
		pos="e,1098.4,683.56 1331.2,718.58 1319.4,715.43 1305.7,712.11 1293,710 1250.3,702.88 1238.8,708.03 1196,702 1165.8,697.74 1132,690.92 \
1106.4,685.33"];
	extract_basename_2 -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 13 1348.8 718.64 1329.37 704.16 1288.13 673.51 1253 648 1225.16 627.78 1222.34 614.74 1190 603 1146.01 587.03 1129.58 \
609.24 1085 595 992.47 565.45 898.26 493.84 861.77 464.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 863.78 462.67 856.81 460.13 860.67 466.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1130.5 583.1 0 91 20 -output_basename_file ",
		label=output_basename_file,
		lp="1130.5,585",
		pos="e,855.64,459.17 1348.8,718.64 1329.4,704.16 1288.1,673.51 1253,648 1225.2,627.78 1222.3,614.74 1190,603 1146,587.03 1129.6,609.24 \
1085,595 992.47,565.45 898.26,493.84 861.77,464.19"];
	extract_basename_2 -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 13 1409.51 718.53 1419.35 714.84 1428.84 709.57 1436 702 1444.23 693.31 1443 687.97 1443 676 1443 676 1443 676 1443 \
494 1443 478.79 1431.25 468.88 1417.05 462.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1418.26 460.31 1410.85 459.98 1416.44 464.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1491.5 583.1 0 97 22 -input_output_filenames ",
		label=input_output_filenames,
		lp="1491.5,585",
		pos="e,1409.4,459.42 1409.5,718.53 1419.3,714.84 1428.8,709.57 1436,702 1444.2,693.31 1443,687.97 1443,676 1443,676 1443,676 1443,494 \
1443,478.79 1431.2,468.88 1417,462.47"];
	extract_basename_2 -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 16 1390.12 718.61 1409.85 711.06 1432 697.75 1432 676 1432 676 1432 676 1432 584 1432 543.69 1454 536.31 1454 496 \
1454 496 1454 496 1454 179 1454 153.44 1427.21 142.72 1400.57 138.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1401.11 135.97 1393.84 137.42 1400.43 140.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1499.5 425.6 0 91 20 -output_file_basename ",
		label=output_file_basename,
		lp="1499.5,427.5",
		pos="e,1392.3,137.21 1390.1,718.61 1409.8,711.06 1432,697.75 1432,676 1432,676 1432,676 1432,584 1432,543.69 1454,536.31 1454,496 1454,\
496 1454,496 1454,179 1454,153.44 1427.2,142.72 1400.6,138.36"];
	extract_basename_2 -> "filter-unmapped"	[_draw_="c 7 -#000000 B 7 1359.39 718.59 1358.22 704.04 1355.18 673.29 1349 648 1340.93 614.99 1326.5 577.92 1317.93 557.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1320.21 556.32 1315.24 550.81 1315.69 558.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1379.5 628.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="1379.5,630",
		pos="e,1314.7,549.42 1359.4,718.59 1358.2,704.04 1355.2,673.29 1349,648 1340.9,614.99 1326.5,577.92 1317.9,557.23"];
	sort_dedup_bams -> index_dedup_bams	[_draw_="c 7 -#000000 B 4 352.88 125.5 320.75 118.53 275.13 108.62 241.01 101.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 241.88 98.89 234.52 99.8 240.84 103.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 329 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="329,112.5",
		pos="e,233.04,99.478 352.88,125.5 320.75,118.53 275.13,108.62 241.01,101.21"];
	mapped_filtered_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 291.5 80.5 291.5 99.5 452.5 99.5 452.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 372 87.5 0 145 27 -mapped_filtered_reads_count ",
		height=0.27778,
		label=mapped_filtered_reads_count,
		pos="372,90",
		rects="291.5,80.5,452.5,99.5",
		width=2.2361];
	sort_dedup_bams -> mapped_filtered_reads_count	[_draw_="c 7 -#000000 B 4 388.14 125.71 385.65 120.36 382.33 113.22 379.35 106.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 381.66 105.95 376.48 100.64 377.21 108.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 413 110.6 0 60 14 -input_bam_file ",
		label=input_bam_file,
		lp="413,112.5",
		pos="e,375.84,99.265 388.14,125.71 385.65,120.36 382.33,113.22 379.35,106.81"];
	percent_mitochondrial_reads -> output_percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 1089.44 80.71 1084.93 75 1078.81 67.26 1073.49 60.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1075.74 59.42 1069.47 55.45 1071.89 62.46 ",
		pos="e,1068.5,54.265 1089.4,80.709 1084.9,74.998 1078.8,67.258 1073.5,60.535"];
	remove_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 411 170.5 411 189.5 521 189.5 521 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 466 177.5 0 94 17 -remove_duplicates ",
		height=0.27778,
		label=remove_duplicates,
		pos="466,180",
		rects="411,170.5,521,189.5",
		width=1.5278];
	remove_duplicates -> sort_dedup_bams	[_draw_="c 7 -#000000 B 4 451.38 170.5 440.64 164.26 425.86 155.68 413.74 148.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 415.18 146.64 407.9 145.24 412.72 150.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 454 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="454,157.5",
		pos="e,406.59,144.48 451.38,170.5 440.64,164.26 425.86,155.68 413.74,148.63"];
	percent_uniq_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1346 80.5 1346 99.5 1458 99.5 1458 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1402 87.5 0 96 18 -percent_uniq_reads ",
		height=0.27778,
		label=percent_uniq_reads,
		pos="1402,90",
		rects="1346,80.5,1458,99.5",
		width=1.5556];
	percent_uniq_reads -> output_percentage_uniq_reads	[_draw_="c 7 -#000000 B 7 1428.64 80.53 1438.74 77.41 1450.36 73.92 1461 71 1479.75 65.85 1500.59 60.65 1518.51 56.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1518.81 58.78 1525.05 54.77 1517.67 54.02 ",
		pos="e,1526.5,54.419 1428.6,80.529 1438.7,77.408 1450.4,73.923 1461,71 1479.8,65.846 1500.6,60.647 1518.5,56.335"];
	execute_pcr_bottleneck_coef -> output_pbc_files	[_draw_="c 7 -#000000 B 22 1408.46 440.58 1425.74 434.39 1442 423.83 1442 406 1442 406 1442 406 1442 336.5 1442 302.31 1445.03 293.82 1450 \
260 1455.2 224.64 1465 216.74 1465 181 1465 181 1465 181 1465 89 1465 48.14 1607.21 72.27 1647 63 1653.91 61.39 1661.22 59.27 1668.11 \
57.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1668.63 59.48 1674.51 54.97 1667.1 54.83 ",
		pos="e,1675.9,54.492 1408.5,440.58 1425.7,434.39 1442,423.83 1442,406 1442,406 1442,406 1442,336.5 1442,302.31 1445,293.82 1450,260 1455.2,\
224.64 1465,216.74 1465,181 1465,181 1465,181 1465,89 1465,48.145 1607.2,72.272 1647,63 1653.9,61.389 1661.2,59.269 1668.1,57.075"];
	mark_duplicates -> output_picard_mark_duplicates_files	[_draw_="c 7 -#000000 B 10 708.53 305.59 725.65 299.36 742 288.76 742 271 742 271 742 271 742 89 742 80.09 744.06 70.41 746.31 62.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 748.63 63.29 748.38 55.88 743.95 61.82 ",
		pos="e,748.84,54.432 708.53,305.59 725.65,299.36 742,288.76 742,271 742,271 742,271 742,89 742,80.09 744.06,70.405 746.31,62.486"];
	mark_duplicates -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 4 647.67 305.5 630.34 298.91 606.13 289.7 587.09 282.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 588.11 280.22 580.69 280.02 586.36 284.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 642 290.6 0 38 10 -input_file ",
		label=input_file,
		lp="642,292.5",
		pos="e,579.28,279.48 647.67,305.5 630.34,298.91 606.13,289.7 587.09,282.45"];
	mapped_filtered_reads_count -> output_read_count_mapped_filtered	[_draw_="c 7 -#000000 B 4 360.94 80.5 353.19 74.56 342.67 66.48 333.76 59.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 335.29 57.72 328.24 55.4 332.3 61.61 ",
		pos="e,327.04,54.478 360.94,80.505 353.19,74.556 342.67,66.481 333.76,59.637"];
	"preseq-c-curve" -> output_preseq_c_curve_files	[_draw_="c 7 -#000000 B 7 1345.23 125.73 1342.04 114.6 1338.14 94.52 1346 80 1350.97 70.81 1359.63 63.71 1368.47 58.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1369.54 60.63 1374.53 55.14 1367.21 56.32 ",
		pos="e,1375.9,54.413 1345.2,125.73 1342,114.6 1338.1,94.523 1346,80 1351,70.809 1359.6,63.706 1368.5,58.426"];
	"preseq-c-curve" -> percent_uniq_reads	[_draw_="c 7 -#000000 B 7 1352.47 125.91 1355.87 120.32 1360.99 113.02 1367 108 1369.02 106.31 1371.24 104.74 1373.55 103.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1374.4 105.63 1379.31 100.07 1372.01 101.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1414 110.6 0 94 22 -preseq_c_curve_outfile ",
		label=preseq_c_curve_outfile,
		lp="1414,112.5",
		pos="e,1380.6,99.328 1352.5,125.91 1355.9,120.32 1361,113.02 1367,108 1369,106.31 1371.2,104.74 1373.5,103.3"];
	sort_masked_bams -> index_masked_bams	[_draw_="c 7 -#000000 B 4 720.42 395.71 720.06 390.59 719.59 383.85 719.16 377.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 721.61 377.59 718.68 370.78 716.73 377.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 738 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="738,382.5",
		pos="e,718.58,369.27 720.42,395.71 720.06,390.59 719.59,383.85 719.16,377.67"];
	index_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 460 215.5 460 234.5 606 234.5 606 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 533 222.5 0 130 22 -index_dups_marked_bams ",
		height=0.27778,
		label=index_dups_marked_bams,
		pos="533,225",
		rects="460,215.5,606,234.5",
		width=2.0278];
	sort_dups_marked_bams -> index_dups_marked_bams	[_draw_="c 7 -#000000 B 4 552.37 260.71 549.32 255.24 545.22 247.9 541.58 241.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 543.9 240.51 538.35 235.59 539.62 242.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 566 245.6 0 38 10 -input_file ",
		label=input_file,
		lp="566,247.5",
		pos="e,537.61,234.27 552.37,260.71 549.32,255.24 545.22,247.9 541.58,241.38"];
	extract_basename_1 -> extract_basename_2	[_draw_="c 7 -#000000 B 7 1226.77 790.55 1245.43 784.18 1271.11 774.87 1293 765 1308.6 757.97 1325.57 748.83 1338.53 741.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.47 743.81 1344.34 738.21 1337.05 739.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1291 775.6 0 36 9 -file_path ",
		label=file_path,
		lp="1291,777.5",
		pos="e,1345.7,737.46 1226.8,790.55 1245.4,784.18 1271.1,774.87 1293,765 1308.6,757.97 1325.6,748.83 1338.5,741.52"];
	"filter-unmapped" -> filtered2sorted	[_draw_="c 7 -#000000 B 4 1302.9 530.71 1297.21 524.88 1289.45 516.93 1282.79 510.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1284.77 508.64 1278.13 505.35 1281.27 512.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1312 515.6 0 38 10 -input_file ",
		label=input_file,
		lp="1312,517.5",
		pos="e,1277.1,504.27 1302.9,530.71 1297.2,524.88 1289.4,516.93 1282.8,510.12"];
	index_dups_marked_bams -> output_data_sorted_dups_marked_bam_files	[_draw_="c 7 -#000000 B 10 533 215.76 533 207.1 533 193.09 533 181 533 181 533 181 533 89 533 80.31 533 70.63 533 62.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 535.45 62.76 533 55.76 530.55 62.76 ",
		pos="e,533,54.243 533,215.76 533,207.1 533,193.09 533,181 533,181 533,181 533,89 533,80.308 533,70.627 533,62.655"];
	index_dups_marked_bams -> remove_duplicates	[_draw_="c 7 -#000000 B 7 507.25 215.57 501.66 213.21 495.95 210.35 491 207 486.23 203.78 481.67 199.52 477.78 195.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 479.75 193.91 473.28 190.29 476.07 197.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 510 200.6 0 38 10 -input_file ",
		label=input_file,
		lp="510,202.5",
		pos="e,472.27,189.15 507.25,215.57 501.66,213.21 495.95,210.35 491,207 486.23,203.78 481.67,199.52 477.78,195.38"];
	sam2bam -> sort_bams	[_draw_="c 7 -#000000 B 7 1149.58 620.84 1154.45 615.22 1161.53 607.9 1169 603 1171.87 601.12 1174.98 599.39 1178.17 597.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1178.93 600.16 1184.3 595.05 1176.91 595.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1188 605.6 0 38 10 -input_file ",
		label=input_file,
		lp="1188,607.5",
		pos="e,1185.7,594.43 1149.6,620.84 1154.5,615.22 1161.5,607.9 1169,603 1171.9,601.12 1175,599.39 1178.2,597.82"];
}