digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 576 233 576 0 ",
		bb="0,0,576,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 170 8 225 534 225 534 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 213 0 84 15 -Workflow Inputs ",
			bb="8,170,534,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		index_output_filename	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 240 178.5 240 197.5 368 197.5 368 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 304 185.5 0 112 21 -index_output_filename ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=index_output_filename,
			pos="304,188",
			rects="240,178.5,368,197.5",
			width=1.7778];
		make_unique	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 372 178.5 372 197.5 454 197.5 454 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 413 185.5 0 66 11 -make_unique ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=make_unique,
			pos="413,188",
			rects="372,178.5,454,197.5",
			width=1.1389];
		annotation_gtf_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 178.5 16 197.5 124 197.5 124 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 70 185.5 0 92 19 -annotation_gtf_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=annotation_gtf_file,
			pos="70,188",
			rects="16,178.5,124,197.5",
			width=1.5];
		genome_fasta_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 128.5 178.5 128.5 197.5 235.5 197.5 235.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 182 185.5 0 91 17 -genome_fasta_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=genome_fasta_file,
			pos="182,188",
			rects="128.5,178.5,235.5,197.5",
			width=1.4861];
		kmer_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 458.5 178.5 458.5 197.5 525.5 197.5 525.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 492 185.5 0 51 9 -kmer_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kmer_size,
			pos="492,188",
			rects="458.5,178.5,525.5,197.5",
			width=0.93056];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 106 8 106 63 568 63 568 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 160 15 0 92 16 -Workflow Outputs ",
			bb="106,8,568,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="160,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		kallisto_stdout_log	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 254 35.5 254 54.5 362 54.5 362 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 308 42.5 0 92 19 -kallisto_stdout_log ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kallisto_stdout_log,
			pos="308,45",
			rects="254,35.5,362,54.5",
			width=1.5];
		kallisto_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 366 35.5 366 54.5 450 54.5 450 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 408 42.5 0 68 14 -kallisto_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kallisto_index,
			pos="408,45",
			rects="366,35.5,450,54.5",
			width=1.1667];
		kallisto_stderr_log	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 454 35.5 454 54.5 560 54.5 560 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 507 42.5 0 90 19 -kallisto_stderr_log ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kallisto_stderr_log,
			pos="507,45",
			rects="454,35.5,560,54.5",
			width=1.4722];
		transcriptome_fasta_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 114.5 35.5 114.5 54.5 249.5 54.5 249.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 182 42.5 0 119 24 -transcriptome_fasta_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=transcriptome_fasta_file,
			pos="182,45",
			rects="114.5,35.5,249.5,54.5",
			width=1.875];
	}
	generate_kallisto_index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 341.5 80.5 341.5 99.5 474.5 99.5 474.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 408 87.5 0 117 23 -generate_kallisto_index ",
		height=0.27778,
		label=generate_kallisto_index,
		pos="408,90",
		rects="341.5,80.5,474.5,99.5",
		width=1.8472];
	index_output_filename -> generate_kallisto_index	[_draw_="c 7 -#000000 B 7 307.13 178.78 312.4 165.88 324.14 140.74 341 125 351.01 115.65 364.08 108.25 376.02 102.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 376.82 105.1 382.26 100.06 374.87 100.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 374.5 133.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="374.5,135",
		pos="e,383.65,99.454 307.13,178.78 312.4,165.88 324.14,140.74 341,125 351.01,115.65 364.08,108.25 376.02,102.78"];
	make_unique -> generate_kallisto_index	[_draw_="c 7 -#000000 B 4 412.57 178.82 411.76 163.17 409.96 128.71 408.88 107.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 411.33 107.81 408.52 100.95 406.44 108.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 437.5 133.1 0 55 11 -make_unique ",
		label=make_unique,
		lp="437.5,135",
		pos="e,408.44,99.438 412.57,178.82 411.76,163.17 409.96,128.71 408.88,107.91"];
	generate_transcriptome	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 115 125.5 115 144.5 249 144.5 249 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 182 132.5 0 118 22 -generate_transcriptome ",
		height=0.27778,
		label=generate_transcriptome,
		pos="182,135",
		rects="115,125.5,249,144.5",
		width=1.8611];
	annotation_gtf_file -> generate_transcriptome	[_draw_="c 7 -#000000 B 7 76.04 178.65 82.19 170.79 92.43 159.32 104 153 108.13 150.74 112.54 148.79 117.07 147.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 117.53 149.52 123.37 144.96 115.96 144.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 142.5 155.6 0 77 19 -annotation_gtf_file ",
		label=annotation_gtf_file,
		lp="142.5,157.5",
		pos="e,124.81,144.47 76.044,178.65 82.187,170.79 92.425,159.32 104,153 108.13,150.74 112.54,148.79 117.07,147.09"];
	genome_fasta_file -> generate_transcriptome	[_draw_="c 7 -#000000 B 4 182 178.58 182 171.52 182 161.24 182 152.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 184.45 152.78 182 145.78 179.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 220 155.6 0 76 17 -genome_fasta_file ",
		label=genome_fasta_file,
		lp="220,157.5",
		pos="e,182,144.26 182,178.58 182,171.52 182,161.24 182,152.55"];
	kmer_size -> generate_kallisto_index	[_draw_="c 7 -#000000 B 7 490.34 178.88 487.39 166.12 480.14 141.16 466 125 458.02 115.88 446.98 108.57 436.66 103.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 438.05 101.05 430.69 100.11 435.86 105.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 498.5 133.1 0 41 9 -kmer_size ",
		label=kmer_size,
		lp="498.5,135",
		pos="e,429.34,99.434 490.34,178.88 487.39,166.12 480.14,141.16 466,125 458.02,115.88 446.98,108.57 436.66,103.09"];
	generate_transcriptome -> transcriptome_fasta_file	[_draw_="c 7 -#000000 B 4 182 125.56 182 111.14 182 81.48 182 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 184.45 62.8 182 55.8 179.55 62.8 ",
		pos="e,182,54.284 182,125.56 182,111.14 182,81.476 182,62.727"];
	generate_transcriptome -> generate_kallisto_index	[_draw_="c 7 -#000000 B 7 192.36 125.68 200.47 119.66 212.29 111.92 224 108 243.89 101.34 291.48 97.05 333.28 94.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 333.2 96.9 340.04 94.03 332.9 92.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 273.5 110.6 0 99 24 -transcriptome_fasta_file ",
		label=transcriptome_fasta_file,
		lp="273.5,112.5",
		pos="e,341.55,93.942 192.36,125.68 200.47,119.66 212.29,111.92 224,108 243.89,101.34 291.48,97.045 333.28,94.441"];
	generate_kallisto_index -> kallisto_stdout_log	[_draw_="c 7 -#000000 B 4 388.24 80.5 373.18 74.03 352.24 65.02 335.53 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 336.5 55.59 329.11 55.08 334.57 60.09 ",
		pos="e,327.72,54.478 388.24,80.505 373.18,74.026 352.24,65.024 335.53,57.84"];
	generate_kallisto_index -> kallisto_index	[_draw_="c 7 -#000000 B 4 408 80.71 408 75.59 408 68.85 408 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 410.45 62.78 408 55.78 405.55 62.78 ",
		pos="e,408,54.265 408,80.709 408,75.593 408,68.848 408,62.666"];
	generate_kallisto_index -> kallisto_stderr_log	[_draw_="c 7 -#000000 B 4 427.56 80.5 442.47 74.03 463.2 65.02 479.74 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 480.65 60.12 486.09 55.08 478.7 55.62 ",
		pos="e,487.48,54.478 427.56,80.505 442.47,74.026 463.2,65.024 479.74,57.84"];
}