digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 547 233 547 0 ",
		bb="0,0,547,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 170 8 225 533 225 533 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 213 0 84 15 -Workflow Inputs ",
			bb="8,170,533,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		kmer_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 239.5 178.5 239.5 197.5 306.5 197.5 306.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 273 185.5 0 51 9 -kmer_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kmer_size,
			pos="273,188",
			rects="239.5,178.5,306.5,197.5",
			width=0.93056];
		index_output_filename	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 311 178.5 311 197.5 439 197.5 439 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 375 185.5 0 112 21 -index_output_filename ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=index_output_filename,
			pos="375,188",
			rects="311,178.5,439,197.5",
			width=1.7778];
		annotation_gtf_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 178.5 16 197.5 124 197.5 124 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 70 185.5 0 92 19 -annotation_gtf_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=annotation_gtf_file,
			pos="70,188",
			rects="16,178.5,124,197.5",
			width=1.5];
		genome_fasta_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 128.5 178.5 128.5 197.5 235.5 197.5 235.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 182 185.5 0 91 17 -genome_fasta_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=genome_fasta_file,
			pos="182,188",
			rects="128.5,178.5,235.5,197.5",
			width=1.4861];
		make_unique	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 443 178.5 443 197.5 525 197.5 525 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 484 185.5 0 66 11 -make_unique ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=make_unique,
			pos="484,188",
			rects="443,178.5,525,197.5",
			width=1.1389];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 77 8 77 63 539 63 539 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 131 15 0 92 16 -Workflow Outputs ",
			bb="77,8,539,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="131,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		kallisto_stdout_log	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 225 35.5 225 54.5 333 54.5 333 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 279 42.5 0 92 19 -kallisto_stdout_log ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kallisto_stdout_log,
			pos="279,45",
			rects="225,35.5,333,54.5",
			width=1.5];
		transcriptome_fasta_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 85.5 35.5 85.5 54.5 220.5 54.5 220.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 153 42.5 0 119 24 -transcriptome_fasta_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=transcriptome_fasta_file,
			pos="153,45",
			rects="85.5,35.5,220.5,54.5",
			width=1.875];
		kallisto_stderr_log	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 337 35.5 337 54.5 443 54.5 443 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 390 42.5 0 90 19 -kallisto_stderr_log ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kallisto_stderr_log,
			pos="390,45",
			rects="337,35.5,443,54.5",
			width=1.4722];
		kallisto_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 447 35.5 447 54.5 531 54.5 531 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 489 42.5 0 68 14 -kallisto_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kallisto_index,
			pos="489,45",
			rects="447,35.5,531,54.5",
			width=1.1667];
	}
	generate_kallisto_index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 308.5 80.5 308.5 99.5 441.5 99.5 441.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 375 87.5 0 117 23 -generate_kallisto_index ",
		height=0.27778,
		label=generate_kallisto_index,
		pos="375,90",
		rects="308.5,80.5,441.5,99.5",
		width=1.8472];
	kmer_size -> generate_kallisto_index	[_draw_="c 7 -#000000 B 7 280.47 178.66 291.53 166.46 313.11 143.2 333 125 340.74 117.92 349.72 110.54 357.4 104.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 358.8 106.49 362.8 100.25 355.78 102.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 353.5 133.1 0 41 9 -kmer_size ",
		label=kmer_size,
		lp="353.5,135",
		pos="e,364,99.316 280.47,178.66 291.53,166.46 313.11,143.2 333,125 340.74,117.92 349.72,110.54 357.4,104.47"];
	index_output_filename -> generate_kallisto_index	[_draw_="c 7 -#000000 B 4 375 178.82 375 163.17 375 128.71 375 107.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 377.45 107.95 375 100.95 372.55 107.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 408.5 133.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="408.5,135",
		pos="e,375,99.438 375,178.82 375,163.17 375,128.71 375,107.91"];
	generate_transcriptome	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 102 125.5 102 144.5 236 144.5 236 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 169 132.5 0 118 22 -generate_transcriptome ",
		height=0.27778,
		label=generate_transcriptome,
		pos="169,135",
		rects="102,125.5,236,144.5",
		width=1.8611];
	annotation_gtf_file -> generate_transcriptome	[_draw_="c 7 -#000000 B 7 74.18 178.67 78.54 170.83 86.14 159.37 96 153 99.16 150.96 102.54 149.16 106.04 147.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 106.89 149.88 112.48 145.01 105.07 145.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 134.5 155.6 0 77 19 -annotation_gtf_file ",
		label=annotation_gtf_file,
		lp="134.5,157.5",
		pos="e,113.88,144.45 74.177,178.67 78.545,170.83 86.137,159.37 96,153 99.16,150.96 102.54,149.16 106.04,147.58"];
	genome_fasta_file -> generate_transcriptome	[_draw_="c 7 -#000000 B 4 179.85 178.58 178.04 171.45 175.38 161.02 173.15 152.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 175.58 151.91 171.48 145.73 170.84 153.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 214 155.6 0 76 17 -genome_fasta_file ",
		label=genome_fasta_file,
		lp="214,157.5",
		pos="e,171.11,144.26 179.85,178.58 178.04,171.45 175.38,161.02 173.15,152.27"];
	make_unique -> generate_kallisto_index	[_draw_="c 7 -#000000 B 7 480.31 178.78 474.18 165.89 460.77 140.75 443 125 432.55 115.74 419.12 108.32 406.96 102.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 407.98 100.58 400.58 100.06 406.04 105.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 487.5 133.1 0 55 11 -make_unique ",
		label=make_unique,
		lp="487.5,135",
		pos="e,399.19,99.464 480.31,178.78 474.18,165.89 460.77,140.75 443,125 432.55,115.74 419.12,108.32 406.96,102.81"];
	generate_transcriptome -> transcriptome_fasta_file	[_draw_="c 7 -#000000 B 4 167.47 125.56 164.83 111.07 159.4 81.21 155.99 62.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 158.44 62.22 154.78 55.77 153.62 63.1 ",
		pos="e,154.51,54.284 167.47,125.56 164.83,111.07 159.4,81.205 155.99,62.471"];
	generate_transcriptome -> generate_kallisto_index	[_draw_="c 7 -#000000 B 7 180.21 125.73 188.95 119.74 201.64 112.02 214 108 241.37 99.09 272.61 94.59 300.24 92.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 300.37 94.85 307.18 91.9 300.02 89.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 263.5 110.6 0 99 24 -transcriptome_fasta_file ",
		label=transcriptome_fasta_file,
		lp="263.5,112.5",
		pos="e,308.69,91.789 180.21,125.73 188.95,119.74 201.64,112.02 214,108 241.37,99.095 272.61,94.594 300.24,92.398"];
	generate_kallisto_index -> kallisto_stdout_log	[_draw_="c 7 -#000000 B 4 356.03 80.5 341.57 74.03 321.47 65.02 305.43 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 306.7 55.72 299.31 55.1 304.7 60.19 ",
		pos="e,297.93,54.478 356.03,80.505 341.57,74.026 321.47,65.024 305.43,57.84"];
	generate_kallisto_index -> kallisto_stderr_log	[_draw_="c 7 -#000000 B 4 377.89 80.71 379.72 75.47 382.14 68.53 384.34 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 386.63 63.11 386.62 55.69 382 61.5 ",
		pos="e,387.12,54.265 377.89,80.709 379.72,75.474 382.14,68.534 384.34,62.235"];
	generate_kallisto_index -> kallisto_index	[_draw_="c 7 -#000000 B 4 397.52 80.5 415.01 73.91 439.43 64.7 458.64 57.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 459.42 59.77 465.11 55.01 457.69 55.19 ",
		pos="e,466.52,54.478 397.52,80.505 415.01,73.908 439.43,64.696 458.64,57.45"];
}