digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 548 233 548 0 ",
		bb="0,0,548,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 170 8 225 534 225 534 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 213 0 84 15 -Workflow Inputs ",
			bb="8,170,534,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		index_output_filename	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 398 178.5 398 197.5 526 197.5 526 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 462 185.5 0 112 21 -index_output_filename ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=index_output_filename,
			pos="462,188",
			rects="398,178.5,526,197.5",
			width=1.7778];
		genome_fasta_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 178.5 16.5 197.5 123.5 197.5 123.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 70 185.5 0 91 17 -genome_fasta_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=genome_fasta_file,
			pos="70,188",
			rects="16.5,178.5,123.5,197.5",
			width=1.4861];
		make_unique	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 240 178.5 240 197.5 322 197.5 322 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 281 185.5 0 66 11 -make_unique ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=make_unique,
			pos="281,188",
			rects="240,178.5,322,197.5",
			width=1.1389];
		kmer_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 326.5 178.5 326.5 197.5 393.5 197.5 393.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 360 185.5 0 51 9 -kmer_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kmer_size,
			pos="360,188",
			rects="326.5,178.5,393.5,197.5",
			width=0.93056];
		annotation_gtf_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 128 178.5 128 197.5 236 197.5 236 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 182 185.5 0 92 19 -annotation_gtf_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=annotation_gtf_file,
			pos="182,188",
			rects="128,178.5,236,197.5",
			width=1.5];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 78 8 78 63 540 63 540 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 132 15 0 92 16 -Workflow Outputs ",
			bb="78,8,540,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="132,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		kallisto_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 448 35.5 448 54.5 532 54.5 532 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 490 42.5 0 68 14 -kallisto_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kallisto_index,
			pos="490,45",
			rects="448,35.5,532,54.5",
			width=1.1667];
		kallisto_stdout_log	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 226 35.5 226 54.5 334 54.5 334 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 280 42.5 0 92 19 -kallisto_stdout_log ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kallisto_stdout_log,
			pos="280,45",
			rects="226,35.5,334,54.5",
			width=1.5];
		kallisto_stderr_log	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 338 35.5 338 54.5 444 54.5 444 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 391 42.5 0 90 19 -kallisto_stderr_log ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=kallisto_stderr_log,
			pos="391,45",
			rects="338,35.5,444,54.5",
			width=1.4722];
		transcriptome_fasta_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 86.5 35.5 86.5 54.5 221.5 54.5 221.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 154 42.5 0 119 24 -transcriptome_fasta_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=transcriptome_fasta_file,
			pos="154,45",
			rects="86.5,35.5,221.5,54.5",
			width=1.875];
	}
	generate_kallisto_index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 293.5 80.5 293.5 99.5 426.5 99.5 426.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 360 87.5 0 117 23 -generate_kallisto_index ",
		height=0.27778,
		label=generate_kallisto_index,
		pos="360,90",
		rects="293.5,80.5,426.5,99.5",
		width=1.8472];
	index_output_filename -> generate_kallisto_index	[_draw_="c 7 -#000000 B 7 454.53 178.66 443.47 166.46 421.89 143.2 402 125 394.26 117.92 385.28 110.54 377.6 104.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 379.22 102.63 372.2 100.25 376.2 106.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 454.5 133.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="454.5,135",
		pos="e,371,99.316 454.53,178.66 443.47,166.46 421.89,143.2 402,125 394.26,117.92 385.28,110.54 377.6,104.47"];
	generate_transcriptome	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 92 125.5 92 144.5 226 144.5 226 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 159 132.5 0 118 22 -generate_transcriptome ",
		height=0.27778,
		label=generate_transcriptome,
		pos="159,135",
		rects="92,125.5,226,144.5",
		width=1.8611];
	genome_fasta_file -> generate_transcriptome	[_draw_="c 7 -#000000 B 7 72.99 178.71 76.23 170.9 82.15 159.47 91 153 93.63 151.08 96.46 149.37 99.41 147.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 100.2 150.19 105.58 145.09 98.19 145.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 129 155.6 0 76 17 -genome_fasta_file ",
		label=genome_fasta_file,
		lp="129,157.5",
		pos="e,106.96,144.47 72.986,178.71 76.225,170.9 82.15,159.47 91,153 93.632,151.08 96.459,149.37 99.41,147.85"];
	make_unique -> generate_kallisto_index	[_draw_="c 7 -#000000 B 7 282.24 178.91 284.55 166.19 290.55 141.29 304 125 311.44 115.98 321.94 108.73 331.84 103.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 332.79 105.53 337.88 100.14 330.54 101.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 331.5 133.1 0 55 11 -make_unique ",
		label=make_unique,
		lp="331.5,135",
		pos="e,339.23,99.447 282.24,178.91 284.55,166.19 290.55,141.29 304,125 311.44,115.98 321.94,108.73 331.84,103.27"];
	kmer_size -> generate_kallisto_index	[_draw_="c 7 -#000000 B 4 360 178.82 360 163.17 360 128.71 360 107.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 362.45 107.95 360 100.95 357.55 107.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 380.5 133.1 0 41 9 -kmer_size ",
		label=kmer_size,
		lp="380.5,135",
		pos="e,360,99.438 360,178.82 360,163.17 360,128.71 360,107.91"];
	annotation_gtf_file -> generate_transcriptome	[_draw_="c 7 -#000000 B 4 178.2 178.58 174.95 171.37 170.19 160.81 166.22 152 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 168.46 151.02 163.35 145.64 163.99 153.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 209.5 155.6 0 77 19 -annotation_gtf_file ",
		label=annotation_gtf_file,
		lp="209.5,157.5",
		pos="e,162.73,144.26 178.2,178.58 174.95,171.37 170.19,160.81 166.22,152"];
	generate_kallisto_index -> kallisto_index	[_draw_="c 7 -#000000 B 7 388.51 80.59 404.82 75.68 425.64 69.23 444 63 449.31 61.2 454.93 59.2 460.35 57.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 460.95 59.61 466.67 54.89 459.26 55.02 ",
		pos="e,468.09,54.37 388.51,80.593 404.82,75.676 425.64,69.229 444,63 449.31,61.199 454.93,59.2 460.35,57.223"];
	generate_kallisto_index -> kallisto_stdout_log	[_draw_="c 7 -#000000 B 4 344.19 80.5 332.47 74.2 316.3 65.51 303.13 58.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 304.43 56.35 297.11 55.19 302.11 60.67 ",
		pos="e,295.77,54.478 344.19,80.505 332.47,74.203 316.3,65.514 303.13,58.432"];
	generate_kallisto_index -> kallisto_stderr_log	[_draw_="c 7 -#000000 B 4 365.98 80.71 370.01 75.12 375.44 67.58 380.22 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 382.05 62.6 384.16 55.49 378.08 59.74 ",
		pos="e,385.04,54.265 365.98,80.709 370.01,75.117 375.44,67.579 380.22,60.957"];
	generate_transcriptome -> transcriptome_fasta_file	[_draw_="c 7 -#000000 B 4 158.52 125.56 157.7 111.14 156.02 81.48 154.95 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 157.4 62.64 154.56 55.79 152.51 62.92 ",
		pos="e,154.47,54.284 158.52,125.56 157.7,111.14 156.02,81.476 154.95,62.727"];
	generate_transcriptome -> generate_kallisto_index	[_draw_="c 7 -#000000 B 7 166.26 125.68 172.04 119.66 180.68 111.93 190 108 207.09 100.8 248.04 96.58 285.47 94.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 285.55 96.59 292.38 93.71 285.24 91.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 239.5 110.6 0 99 24 -transcriptome_fasta_file ",
		label=transcriptome_fasta_file,
		lp="239.5,112.5",
		pos="e,293.89,93.619 166.26,125.68 172.04,119.66 180.68,111.93 190,108 207.09,100.8 248.04,96.577 285.47,94.141"];
}