digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 413 1116 413 1116 0 ",
		bb="0,0,1116,413",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 350 8 405 1108 405 1108 350 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 393 0 84 15 -Workflow Inputs ",
			bb="8,350,1108,405",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,395.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		islands_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 575.5 358.5 575.5 377.5 692.5 377.5 692.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 634 365.5 0 101 21 -XLS called peaks file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="XLS called peaks file",
			pos="634,368",
			rects="575.5,358.5,692.5,377.5",
			width=1.625];
		annotation_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 318 358.5 318 377.5 406 377.5 406 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 362 365.5 0 72 15 -Annotation file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Annotation file",
			pos="362,368",
			rects="318,358.5,406,377.5",
			width=1.2222];
		chrom_length_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 966 358.5 966 377.5 1100 377.5 1100 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1033 365.5 0 118 22 -Chromosome length file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Chromosome length file",
			pos="1033,368",
			rects="966,358.5,1100,377.5",
			width=1.8611];
		tss_distance	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 126.5 358.5 126.5 377.5 205.5 377.5 205.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 166 365.5 0 63 12 -TSS distance ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="TSS distance",
			pos="166,368",
			rects="126.5,358.5,205.5,377.5",
			width=1.0972];
		islands_control_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 410.5 358.5 410.5 377.5 571.5 377.5 571.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 491 365.5 0 145 31 -XLS called peaks file (control) ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="XLS called peaks file (control)",
			pos="491,368",
			rects="410.5,358.5,571.5,377.5",
			width=2.2361];
		bambai_pair	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 696.5 358.5 696.5 377.5 961.5 377.5 961.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 829 365.5 0 249 49 -Coordinate sorted BAM alignment file (+index BAI) ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Coordinate sorted BAM alignment file (+index BAI)",
			pos="829,368",
			rects="696.5,358.5,961.5,377.5",
			width=3.6806];
		promoter_bp	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 358.5 16 377.5 122 377.5 122 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 69 365.5 0 90 17 -Promoter distance ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Promoter distance",
			pos="69,368",
			rects="16,358.5,122,377.5",
			width=1.4722];
		stitch_distance	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 210 358.5 210 377.5 314 377.5 314 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 262 365.5 0 88 18 -Stitching distance ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Stitching distance",
			pos="262,368",
			rects="210,358.5,314,377.5",
			width=1.4444];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 400 8 400 63 1066 63 1066 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 454 15 0 92 16 -Workflow Outputs ",
			bb="400,8,1066,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="454,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		gene_names_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 542.5 35.5 542.5 54.5 859.5 54.5 859.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 701 42.5 0 301 56 -Gateway Super Enhancer results from ROSE with gene names ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Gateway Super Enhancer results from ROSE with gene names",
			pos="701,45",
			rects="542.5,35.5,859.5,54.5",
			width=4.4028];
		png_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 408 35.5 408 54.5 538 54.5 538 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 473 42.5 0 114 23 -ROSE visualization plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="ROSE visualization plot",
			pos="473,45",
			rects="408,35.5,538,54.5",
			width=1.8056];
		bigbed_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 864 35.5 864 54.5 1058 54.5 1058 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 961 42.5 0 178 34 -Gateway Super Enhancer bigBed file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Gateway Super Enhancer bigBed file",
			pos="961,45",
			rects="864,35.5,1058,54.5",
			width=2.6944];
	}
	make_gff	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 474 305.5 474 324.5 536 324.5 536 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 505 312.5 0 46 8 -make_gff ",
		height=0.27778,
		label=make_gff,
		pos="505,315",
		rects="474,305.5,536,324.5",
		width=0.86111];
	islands_file -> make_gff	[_draw_="c 7 -#000000 B 10 608.16 358.51 596.48 354.23 582.7 348.56 571 342 565.18 338.74 564.93 336.04 559 333 554.29 330.58 549.18 328.43 \
544.04 326.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 544.84 324.23 537.42 324.27 543.25 328.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 594 335.6 0 46 12 -islands_file ",
		label=islands_file,
		lp="594,337.5",
		pos="e,535.99,323.78 608.16,358.51 596.48,354.23 582.7,348.56 571,342 565.18,338.74 564.93,336.04 559,333 554.29,330.58 549.18,328.43 \
544.04,326.54"];
	run_rose	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 419.5 260.5 419.5 279.5 478.5 279.5 478.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 449 267.5 0 43 8 -run_rose ",
		height=0.27778,
		label=run_rose,
		pos="449,270",
		rects="419.5,260.5,478.5,279.5",
		width=0.81944];
	annotation_file -> run_rose	[_draw_="c 7 -#000000 B 7 365.9 358.67 372.09 346.05 385.09 321.81 401 305 408.57 297 418.28 289.71 426.98 283.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 428.12 286.13 432.71 280.3 425.49 282 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 432 313.1 0 62 15 -annotation_file ",
		label=annotation_file,
		lp="432,315",
		pos="e,433.98,279.49 365.9,358.67 372.09,346.05 385.09,321.81 401,305 408.57,297 418.28,289.71 426.98,283.95"];
	assign_genes	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 501.5 125.5 501.5 144.5 584.5 144.5 584.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 543 132.5 0 67 12 -assign_genes ",
		height=0.27778,
		label=assign_genes,
		pos="543,135",
		rects="501.5,125.5,584.5,144.5",
		width=1.1528];
	annotation_file -> assign_genes	[_draw_="c 7 -#000000 B 19 385.85 358.5 410.86 349.3 448.15 334.63 460 325 468.42 318.16 464.79 310.74 474 305 493.47 292.85 506.28 310.26 \
525 297 535.71 289.41 539 284.12 539 271 539 271 539 271 539 179 539 170.27 539.83 160.59 540.73 152.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 543.15 152.97 541.59 145.72 538.29 152.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 581.5 245.6 0 85 19 -annotation_filename ",
		label=annotation_filename,
		lp="581.5,247.5",
		pos="e,541.78,144.22 385.85,358.5 410.86,349.3 448.15,334.63 460,325 468.42,318.16 464.79,310.74 474,305 493.47,292.85 506.28,310.26 \
525,297 535.71,289.41 539,284.12 539,271 539,271 539,271 539,179 539,170.27 539.83,160.59 540.73,152.62"];
	bed_to_bigbed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 916 170.5 916 189.5 1004 189.5 1004 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 960 177.5 0 72 13 -bed_to_bigbed ",
		height=0.27778,
		label=bed_to_bigbed,
		pos="960,180",
		rects="916,170.5,1004,189.5",
		width=1.2222];
	chrom_length_file -> bed_to_bigbed	[_draw_="c 7 -#000000 B 10 1002.06 358.55 970.77 349.07 927 332.8 927 316 927 316 927 316 927 224 927 212.6 934.39 202.36 942.17 194.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 943.38 196.95 946.96 190.45 940.11 193.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 963.5 268.1 0 73 17 -chrom_length_file ",
		label=chrom_length_file,
		lp="963.5,270",
		pos="e,948.09,189.44 1002.1,358.55 970.77,349.07 927,332.8 927,316 927,316 927,316 927,224 927,212.6 934.39,202.36 942.17,194.74"];
	tss_distance -> run_rose	[_draw_="c 7 -#000000 B 7 173.74 358.62 186.81 345.02 214.72 318.33 244 305 298.68 280.11 368.97 273.22 411.42 271.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 411.36 273.89 418.27 271.19 411.19 268.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 270 313.1 0 52 12 -tss_distance ",
		label=tss_distance,
		lp="270,315",
		pos="e,419.78,271.14 173.74,358.62 186.81,345.02 214.72,318.33 244,305 298.68,280.11 368.97,273.22 411.42,271.44"];
	islands_control_file -> make_gff	[_draw_="c 7 -#000000 B 7 485.96 358.54 482.43 351.43 478.99 341.16 483 333 483.48 332.03 484.04 331.09 484.67 330.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 486.37 331.97 489.47 325.23 482.84 328.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 522.5 335.6 0 79 20 -islands_control_file ",
		label=islands_control_file,
		lp="522.5,337.5",
		pos="e,490.52,324.14 485.96,358.54 482.43,351.43 478.99,341.16 483,333 483.48,332.03 484.04,331.09 484.67,330.2"];
	add_island_names	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 650.5 80.5 650.5 99.5 757.5 99.5 757.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 704 87.5 0 91 16 -add_island_names ",
		height=0.27778,
		label=add_island_names,
		pos="704,90",
		rects="650.5,80.5,757.5,99.5",
		width=1.4861];
	bambai_pair -> add_island_names	[_draw_="c 7 -#000000 B 10 825.45 358.51 821.6 348.52 816 331.35 816 316 816 316 816 316 816 134 816 109.08 791.54 98.06 765.49 93.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 766.16 91.02 758.87 92.37 765.42 95.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 829.5 223.1 0 27 5 -param ",
		label=param,
		lp="829.5,225",
		pos="e,757.38,92.141 825.45,358.51 821.6,348.52 816,331.35 816,316 816,316 816,316 816,134 816,109.08 791.54,98.065 765.49,93.395"];
	rename_png	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 434.5 215.5 434.5 234.5 511.5 234.5 511.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 473 222.5 0 61 10 -rename_png ",
		height=0.27778,
		label=rename_png,
		pos="473,225",
		rects="434.5,215.5,511.5,234.5",
		width=1.0694];
	bambai_pair -> rename_png	[_draw_="c 7 -#000000 B 10 807.58 358.55 774.38 344.89 709.27 315.82 661 280 642.58 266.33 645.61 253.09 625 243 620.25 240.67 562.5 234.66 \
519.59 230.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 519.93 228.02 512.73 229.77 519.46 232.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 717.5 290.6 0 65 15 -target_filename ",
		label=target_filename,
		lp="717.5,292.5",
		pos="e,511.22,229.63 807.58,358.55 774.38,344.89 709.27,315.82 661,280 642.58,266.33 645.61,253.09 625,243 620.25,240.67 562.5,234.66 \
519.59,230.44"];
	bambai_pair -> bed_to_bigbed	[_draw_="c 7 -#000000 B 13 909.08 358.53 956.74 351.18 1008 338.13 1008 316 1008 316 1008 316 1008 224 1008 211.77 1007.3 206.98 999 198 \
997.6 196.48 996.03 195.09 994.36 193.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 996 191.96 988.77 190.3 993.38 196.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1041.5 268.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="1041.5,270",
		pos="e,987.49,189.49 909.08,358.53 956.74,351.18 1008,338.13 1008,316 1008,316 1008,316 1008,224 1008,211.77 1007.3,206.98 999,198 997.6,\
196.48 996.03,195.09 994.36,193.82"];
	bambai_pair -> run_rose	[_draw_="c 7 -#000000 B 19 761.21 358.5 739.43 355.78 715.2 352.75 693 350 664.11 346.42 655.37 351.9 628 342 621.04 339.49 620.6 336.33 \
614 333 605.08 328.5 602.12 329.07 593 325 560.14 310.35 554.76 300.45 521 288 509.95 283.92 497.57 280.59 486.24 277.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 487.04 275.65 479.68 276.54 485.99 280.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 610.5 313.1 0 35 8 -bam_file ",
		label=bam_file,
		lp="610.5,315",
		pos="e,478.2,276.21 761.21,358.5 739.43,355.78 715.2,352.75 693,350 664.11,346.42 655.37,351.9 628,342 621.04,339.49 620.6,336.33 614,\
333 605.08,328.5 602.12,329.07 593,325 560.14,310.35 554.76,300.45 521,288 509.95,283.92 497.57,280.59 486.24,277.98"];
	promoter_bp -> assign_genes	[_draw_="c 7 -#000000 B 10 82.61 358.68 95.2 349.82 112 334.53 112 316 112 316 112 316 112 179 112 141.04 380.21 136.21 493.47 135.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 493.17 138.31 500.16 135.85 493.15 133.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 138 245.6 0 52 11 -promoter_bp ",
		label=promoter_bp,
		lp="138,247.5",
		pos="e,501.67,135.85 82.605,358.68 95.203,349.82 112,334.53 112,316 112,316 112,316 112,179 112,141.04 380.21,136.21 493.47,135.86"];
	stitch_distance -> run_rose	[_draw_="c 7 -#000000 B 7 267.62 358.8 277.19 345.45 297.99 319.13 322 305 349.52 288.81 384.87 280.17 411.29 275.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 411.52 278.1 418.04 274.57 410.74 273.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 353 313.1 0 62 15 -stitch_distance ",
		label=stitch_distance,
		lp="353,315",
		pos="e,419.53,274.33 267.62,358.8 277.19,345.45 297.99,319.13 322,305 349.52,288.81 384.87,280.17 411.29,275.65"];
	add_island_names -> gene_names_file	[_draw_="c 7 -#000000 B 4 703.42 80.71 703.06 75.59 702.59 68.85 702.16 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 704.61 62.59 701.68 55.78 699.73 62.93 ",
		pos="e,701.58,54.265 703.42,80.709 703.06,75.593 702.59,68.848 702.16,62.666"];
	rename_png -> png_file	[_draw_="c 7 -#000000 B 10 473 215.76 473 207.1 473 193.09 473 181 473 181 473 181 473 89 473 80.31 473 70.63 473 62.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 475.45 62.76 473 55.76 470.55 62.76 ",
		pos="e,473,54.243 473,215.76 473,207.1 473,193.09 473,181 473,181 473,181 473,89 473,80.308 473,70.627 473,62.655"];
	bed_to_bigbed -> bigbed_file	[_draw_="c 7 -#000000 B 4 960.06 170.68 960.22 149.13 960.66 91.17 960.88 62.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 963.32 62.85 960.93 55.83 958.42 62.81 ",
		pos="e,960.94,54.317 960.06,170.68 960.22,149.13 960.66,91.169 960.88,62.509"];
	sort_bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 677.5 215.5 677.5 234.5 736.5 234.5 736.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 707 222.5 0 43 8 -sort_bed ",
		height=0.27778,
		label=sort_bed,
		pos="707,225",
		rects="677.5,215.5,736.5,234.5",
		width=0.81944];
	sort_bed -> add_island_names	[_draw_="c 7 -#000000 B 4 706.81 215.68 706.33 194.13 705.02 136.17 704.37 107.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 706.83 107.77 704.22 100.83 701.93 107.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 724 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="724,157.5",
		pos="e,704.19,99.317 706.81,215.68 706.33,194.13 705.02,136.17 704.37,107.51"];
	sort_bed -> bed_to_bigbed	[_draw_="c 7 -#000000 B 4 736.02 219.07 777.91 211.95 855.98 198.68 907.98 189.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 908.11 192.3 914.6 188.72 907.29 187.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 876.5 200.6 0 41 9 -input_bed ",
		label=input_bed,
		lp="876.5,202.5",
		pos="e,916.09,188.46 736.02,219.07 777.91,211.95 855.98,198.68 907.98,189.84"];
	bed_to_macs	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 554.5 170.5 554.5 189.5 635.5 189.5 635.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 595 177.5 0 65 11 -bed_to_macs ",
		height=0.27778,
		label=bed_to_macs,
		pos="595,180",
		rects="554.5,170.5,635.5,189.5",
		width=1.125];
	sort_bed -> bed_to_macs	[_draw_="c 7 -#000000 B 7 684.55 215.57 677.35 212.84 669.33 209.81 662 207 649.69 202.29 636.14 197.04 624.45 192.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 625.53 190.28 618.12 190.03 623.75 194.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 681 200.6 0 38 10 -input_file ",
		label=input_file,
		lp="681,202.5",
		pos="e,616.71,189.48 684.55,215.57 677.35,212.84 669.33,209.81 662,207 649.69,202.29 636.14,197.04 624.45,192.5"];
	make_gff -> run_rose	[_draw_="c 7 -#000000 B 7 474.2 309.88 466.24 307.37 458.41 303.37 453 297 450.74 294.33 449.47 290.94 448.81 287.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 451.26 287.48 448.29 280.68 446.38 287.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 488.5 290.6 0 71 18 -binding_sites_file ",
		label=binding_sites_file,
		lp="488.5,292.5",
		pos="e,448.17,279.17 474.2,309.88 466.24,307.37 458.41,303.37 453,297 450.74,294.33 449.47,290.94 448.81,287.49"];
	bed_to_macs -> assign_genes	[_draw_="c 7 -#000000 B 4 584.73 170.5 577.6 164.62 567.96 156.64 559.74 149.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 561.37 148.02 554.42 145.44 558.25 151.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 603.5 155.6 0 61 14 -input_filename ",
		label=input_filename,
		lp="603.5,157.5",
		pos="e,553.25,144.48 584.73,170.5 577.6,164.62 567.96,156.64 559.74,149.84"];
	run_rose -> rename_png	[_draw_="c 7 -#000000 B 4 453.63 260.71 456.68 255.24 460.78 247.9 464.42 241.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 466.38 242.89 467.65 235.59 462.1 240.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 485.5 245.6 0 45 11 -source_file ",
		label=source_file,
		lp="485.5,247.5",
		pos="e,468.39,234.27 453.63,260.71 456.68,255.24 460.78,247.9 464.42,241.38"];
	run_rose -> sort_bed	[_draw_="c 7 -#000000 B 10 478.21 269.23 513.59 268.83 574.7 265.89 625 252 634.01 249.51 635.23 246.23 644 243 652.22 239.97 661.22 237.22 \
669.77 234.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 670.21 237.28 676.34 233.11 668.95 232.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 671 245.6 0 54 13 -unsorted_file ",
		label=unsorted_file,
		lp="671,247.5",
		pos="e,677.81,232.72 478.21,269.23 513.59,268.83 574.7,265.89 625,252 634.01,249.51 635.23,246.23 644,243 652.22,239.97 661.22,237.22 \
669.77,234.86"];
	assign_genes -> add_island_names	[_draw_="c 7 -#000000 B 4 574.81 125.5 600.5 118.64 636.78 108.95 664.36 101.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 664.66 104.04 670.8 99.87 663.4 99.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 656 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="656,112.5",
		pos="e,672.26,99.478 574.81,125.5 600.5,118.64 636.78,108.95 664.36,101.59"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 711.5 125.5 711.5 144.5 768.5 144.5 768.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 740 132.5 0 41 8 -default1 ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"echo -e \"refseq_id\tgene_id\ttxStart\ttxEnd\tstrand\tchrom\tstart\tend\tlength\tregion\tname\tscore\" > `basename $2`;
cat $0 | \
grep -v refseq_id | paste - $1 | cut -f 1-9,15,19,20 >> `basename $2`
\"",
		pos="740,135",
		rects="711.5,125.5,768.5,144.5",
		width=0.79167];
	default1 -> add_island_names	[_draw_="c 7 -#000000 B 4 733.06 125.71 728.28 120 721.8 112.26 716.17 105.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 718.26 104.22 711.89 100.43 714.51 107.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 736.5 110.6 0 23 6 -script ",
		label=script,
		lp="736.5,112.5",
		pos="e,710.92,99.265 733.06,125.71 728.28,120 721.8,112.26 716.17,105.54"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 935 215.5 935 234.5 985 234.5 985 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 960 222.5 0 34 6 -\"bed6\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"bed6\"",
		pos="960,225",
		rects="935,215.5,985,234.5",
		width=0.69444];
	default2 -> bed_to_bigbed	[_draw_="c 7 -#000000 B 4 960 215.71 960 210.59 960 203.85 960 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 962.45 197.78 960 190.78 957.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 979 200.6 0 38 8 -bed_type ",
		label=bed_type,
		lp="979,202.5",
		pos="e,960,189.27 960,215.71 960,210.59 960,203.85 960,197.67"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 713.5 260.5 713.5 279.5 760.5 279.5 760.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 737 267.5 0 31 6 -\"2,2n\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"2,2n\"",
		pos="737,270",
		rects="713.5,260.5,760.5,279.5",
		width=0.65278];
	default3 -> sort_bed	[_draw_="c 7 -#000000 B 4 731.22 260.71 727.31 255.12 722.06 247.58 717.43 240.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 719.65 239.85 713.63 235.51 715.63 242.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 731.5 245.6 0 15 3 -key ",
		label=key,
		lp="731.5,247.5",
		pos="e,712.77,234.27 731.22,260.71 727.31,255.12 722.06,247.58 717.43,240.96"];
	default4	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 764.5 260.5 764.5 279.5 805.5 279.5 805.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 785 267.5 0 25 5 -\"1,1\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"1,1\"",
		pos="785,270",
		rects="764.5,260.5,805.5,279.5",
		width=0.56944];
	default4 -> sort_bed	[_draw_="c 7 -#000000 B 7 770.91 260.63 762.09 255.44 750.45 248.71 740 243 737.24 241.49 734.32 239.94 731.42 238.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 732.56 236.24 725.21 235.19 730.3 240.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 761.5 245.6 0 15 3 -key ",
		label=key,
		lp="761.5,247.5",
		pos="e,723.87,234.49 770.91,260.63 762.09,255.44 750.45,248.71 740,243 737.24,241.49 734.32,239.94 731.42,238.41"];
	default5	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 662.5 260.5 662.5 279.5 709.5 279.5 709.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 686 267.5 0 31 6 -\"3,3n\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"3,3n\"",
		pos="686,270",
		rects="662.5,260.5,709.5,279.5",
		width=0.65278];
	default5 -> sort_bed	[_draw_="c 7 -#000000 B 7 693.24 260.75 695.32 258.09 697.43 255.04 699 252 700.52 249.06 701.8 245.77 702.87 242.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 705.19 243.35 704.78 235.94 700.48 241.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 709.5 245.6 0 15 3 -key ",
		label=key,
		lp="709.5,247.5",
		pos="e,705.2,234.49 693.24,260.75 695.32,258.09 697.43,255.04 699,252 700.52,249.06 701.8,245.77 702.87,242.56"];
	default6	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 566.5 215.5 566.5 234.5 623.5 234.5 623.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 595 222.5 0 41 8 -default6 ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"cat $0 | grep -v \"#\" | awk 'BEGIN {print \"chr\tstart\tend\tlength\tabs_summit\tpileup\t-log10(pvalue)\tfold_enrichment\t-log10(\
qvalue)\tname\"} {print $1\"\t\"$2\"\t\"$3\"\t\"$3-$2+1\"\t0\t0\t0\t0\t0\t\"$4}' > `basename $0`
\"",
		pos="595,225",
		rects="566.5,215.5,623.5,234.5",
		width=0.79167];
	default6 -> bed_to_macs	[_draw_="c 7 -#000000 B 4 595 215.71 595 210.59 595 203.85 595 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 597.45 197.78 595 190.78 592.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 606.5 200.6 0 23 6 -script ",
		label=script,
		lp="606.5,202.5",
		pos="e,595,189.27 595,215.71 595,210.59 595,203.85 595,197.67"];
}