aicsimageio
anndata~=0.7.8
biopython~=1.79
h5py~=3.6.0
leidenalg~=0.8.9
manhole~=1.8
matplotlib~=3.5.1
networkx~=2.7
# pinned for numba
numpy==1.22
opencv-python
pandas~=1.4.1
pint
scanpy~=1.8.2
scipy~=1.8.0
scvelo~=0.2.4
scikit-learn
tables~=3.7.0
tifffile
umap-learn~=0.5.2

git+https://github.com/andrewhill157/barcodeutils
git+https://github.com/hubmapconsortium/fastq-utils@v0.2.5
