digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 458 521 458 521 0 ",
		bb="0,0,521,458",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 395 8 450 513 450 513 395 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 438 0 84 15 -Workflow Inputs ",
			bb="8,395,513,450",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,440.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 403.5 16.5 422.5 89.5 422.5 89.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 53 410.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="53,413",
			rects="16.5,403.5,89.5,422.5",
			width=1.0139];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 93.5 403.5 93.5 422.5 156.5 422.5 156.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 125 410.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="125,413",
			rects="93.5,403.5,156.5,422.5",
			width=0.875];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 161 403.5 161 422.5 235 422.5 235 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 198 410.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="198,413",
			rects="161,403.5,235,422.5",
			width=1.0278];
		docm_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 239 403.5 239 422.5 303 422.5 303 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 271 410.5 0 48 8 -docm_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_vcf,
			pos="271,413",
			rects="239,403.5,303,422.5",
			width=0.88889];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 307 403.5 307 422.5 385 422.5 385 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 346 410.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="346,413",
			rects="307,403.5,385,422.5",
			width=1.0833];
		filter_docm_variants	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 389 403.5 389 422.5 505 422.5 505 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 447 410.5 0 100 20 -filter_docm_variants ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filter_docm_variants,
			pos="447,413",
			rects="389,403.5,505,422.5",
			width=1.6111];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 237 8 237 63 363 63 363 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 291 15 0 92 16 -Workflow Outputs ",
			bb="237,8,363,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="291,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		docm_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 245.5 35.5 245.5 54.5 354.5 54.5 354.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 300 42.5 0 93 17 -docm_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_variants_vcf,
			pos="300,45",
			rects="245.5,35.5,354.5,54.5",
			width=1.5139];
	}
	docm_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 197.5 170.5 197.5 189.5 402.5 189.5 402.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 300 177.5 0 189 38 -Filter variants from the DoCM detector ",
		height=0.27778,
		label="Filter variants from the DoCM detector",
		pos="300,180",
		rects="197.5,170.5,402.5,189.5",
		width=2.8472];
	tumor_bam -> docm_filter	[_draw_="c 7 -#000000 B 10 56.15 403.84 59.71 393.88 65 376.46 65 361 65 361 65 361 65 224 65 196.41 128.46 185.89 189.42 182.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 189.25 184.6 196.1 181.76 188.97 179.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 88 290.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="88,292.5",
		pos="e,197.61,181.67 56.153,403.84 59.708,393.88 65,376.46 65,361 65,361 65,361 65,224 65,196.41 128.46,185.89 189.42,182.14"];
	GATK_haplotype_caller	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 115 350.5 115 369.5 265 369.5 265 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 190 357.5 0 134 26 -HaplotypeCaller (GATK 3.6) ",
		height=0.27778,
		label="HaplotypeCaller (GATK 3.6)",
		pos="190,360",
		rects="115,350.5,265,369.5",
		width=2.0833];
	tumor_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 67.44 403.6 80.92 396.04 101.8 385.07 121 378 127.41 375.64 134.27 373.51 141.09 371.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 141.45 374.05 147.59 369.89 140.19 369.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 130.5 380.6 0 19 3 -bam ",
		label=bam,
		lp="130.5,382.5",
		pos="e,149.05,369.5 67.436,403.6 80.922,396.04 101.8,385.07 121,378 127.41,375.64 134.27,373.51 141.09,371.61"];
	reference -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 129.63 403.76 134.22 396.21 141.87 385.15 151 378 153.15 376.31 155.5 374.76 157.93 373.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 158.99 375.55 164.07 370.15 156.73 371.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 171 380.6 0 40 9 -reference ",
		label=reference,
		lp="171,382.5",
		pos="e,165.42,369.45 129.63,403.76 134.22,396.21 141.87,385.15 151,378 153.15,376.31 155.5,374.76 157.93,373.34"];
	interval_list -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 196.65 403.67 195.87 398.81 194.87 392.56 194 387 193.52 383.93 193.01 380.65 192.52 377.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 194.96 377.24 191.48 370.69 190.12 377.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 217.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="217.5,382.5",
		pos="e,191.25,369.2 196.65,403.67 195.87,398.81 194.87,392.56 194,387 193.52,383.93 193.01,380.65 192.52,377.5"];
	docm_vcf -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 264.77 403.66 258.69 396.04 248.8 384.93 238 378 235.03 376.09 231.82 374.37 228.51 372.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 229.49 370.57 222.09 370.08 227.57 375.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 268.5 380.6 0 39 8 -docm_vcf ",
		label=docm_vcf,
		lp="268.5,382.5",
		pos="e,220.69,369.49 264.77,403.66 258.69,396.04 248.8,384.93 238,378 235.03,376.09 231.82,374.37 228.51,372.81"];
	normal_bam -> docm_filter	[_draw_="c 7 -#000000 B 13 347.84 403.74 349.91 393.7 353 376.19 353 361 353 361 353 361 353 224 353 212.03 354.07 206.84 346 198 344.59 \
196.46 343.04 195.06 341.37 193.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 342.99 191.91 335.76 190.27 340.39 196.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 378.5 290.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="378.5,292.5",
		pos="e,334.47,189.47 347.84,403.74 349.91,393.7 353,376.19 353,361 353,361 353,361 353,224 353,212.03 354.07,206.84 346,198 344.59,196.46 \
343.04,195.06 341.37,193.78"];
	normal_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 10 328.29 403.64 319.06 399.07 307.7 393.11 298 387 292.36 383.45 292.12 380.65 286 378 280.27 375.51 274.19 373.39 \
267.99 371.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 268.95 369.3 261.55 369.84 267.67 374.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 323.5 380.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="323.5,382.5",
		pos="e,260.09,369.44 328.29,403.64 319.06,399.07 307.7,393.11 298,387 292.36,383.45 292.12,380.65 286,378 280.27,375.51 274.19,373.39 \
267.99,371.58"];
	filter_docm_variants -> docm_filter	[_draw_="c 7 -#000000 B 10 443.17 403.53 439.03 393.57 433 376.43 433 361 433 361 433 361 433 224 433 208.68 400.63 198.01 367.83 191.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 368.33 188.73 360.98 189.76 367.36 193.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 474 290.6 0 82 20 -filter_docm_variants ",
		label=filter_docm_variants,
		lp="474,292.5",
		pos="e,359.5,189.46 443.17,403.53 439.03,393.57 433,376.43 433,361 433,361 433,361 433,224 433,208.68 400.63,198.01 367.83,191.13"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 159.5 305.5 159.5 324.5 224.5 324.5 224.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 192 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="192,315",
		rects="159.5,305.5,224.5,324.5",
		width=0.90278];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 200 260.5 200 279.5 262 279.5 262 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 231 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="231,270",
		rects="200,260.5,262,279.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 199.52 305.71 204.7 300 211.72 292.26 217.82 285.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 219.6 287.22 222.49 280.39 215.97 283.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 220.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="220.5,292.5",
		pos="e,223.5,279.27 199.52,305.71 204.7,300 211.72,292.26 217.82,285.54"];
	decompose	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 200 215.5 200 234.5 304 234.5 304 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 252 222.5 0 88 16 -run vt decompose ",
		height=0.27778,
		label="run vt decompose",
		pos="252,225",
		rects="200,215.5,304,234.5",
		width=1.4444];
	decompose -> docm_filter	[_draw_="c 7 -#000000 B 7 256.52 215.54 259.75 210.06 264.49 203.04 270 198 271.55 196.59 273.23 195.24 274.99 193.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 276.14 196.15 280.7 190.3 273.49 192.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 309.5 200.6 0 79 17 -docm_raw_variants ",
		label=docm_raw_variants,
		lp="309.5,202.5",
		pos="e,281.97,189.48 256.52,215.54 259.75,210.06 264.49,203.04 270,198 271.55,196.59 273.23,195.24 274.99,193.97"];
	bgzip2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 267.5 125.5 267.5 144.5 332.5 144.5 332.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 300 132.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="300,135",
		rects="267.5,125.5,332.5,144.5",
		width=0.90278];
	docm_filter -> bgzip2	[_draw_="c 7 -#000000 B 4 300 170.71 300 165.59 300 158.85 300 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 302.45 152.78 300 145.78 297.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 306.5 155.6 0 13 4 -file ",
		label=file,
		lp="306.5,157.5",
		pos="e,300,144.27 300,170.71 300,165.59 300,158.85 300,152.67"];
	index -> decompose	[_draw_="c 7 -#000000 B 4 235.05 260.71 237.66 255.36 241.15 248.22 244.28 241.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 246.43 242.99 247.3 235.63 242.03 240.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 249.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="249.5,247.5",
		pos="e,247.96,234.27 235.05,260.71 237.66,255.36 241.15,248.22 244.28,241.81"];
	index2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 269 80.5 269 99.5 331 99.5 331 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 300 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="300,90",
		rects="269,80.5,331,99.5",
		width=0.86111];
	bgzip2 -> index2	[_draw_="c 7 -#000000 B 4 300 125.71 300 120.59 300 113.85 300 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 302.45 107.78 300 100.78 297.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 306.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="306.5,112.5",
		pos="e,300,99.265 300,125.71 300,120.59 300,113.85 300,107.67"];
	GATK_haplotype_caller -> bgzip	[_draw_="c 7 -#000000 B 4 190.39 350.71 190.62 345.59 190.94 338.85 191.22 332.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 193.67 332.88 191.55 325.78 188.77 332.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 197.5 335.6 0 13 4 -file ",
		label=file,
		lp="197.5,337.5",
		pos="e,191.62,324.27 190.39,350.71 190.62,345.59 190.94,338.85 191.22,332.67"];
	index2 -> docm_variants_vcf	[_draw_="c 7 -#000000 B 4 300 80.71 300 75.59 300 68.85 300 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 302.45 62.78 300 55.78 297.55 62.78 ",
		pos="e,300,54.265 300,80.709 300,75.593 300,68.848 300,62.666"];
}