digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 413 553 413 553 0 ",
		bb="0,0,553,413",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 350 8 405 545 405 545 350 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 393 0 84 15 -Workflow Inputs ",
			bb="8,350,545,405",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,395.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 238.5 358.5 238.5 377.5 307.5 377.5 307.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 273 365.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="273,368",
			rects="238.5,358.5,307.5,377.5",
			width=0.95833];
		ref_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 388.5 358.5 388.5 377.5 451.5 377.5 451.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 420 365.5 0 47 8 -ref_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ref_name,
			pos="420,368",
			rects="388.5,358.5,451.5,377.5",
			width=0.875];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 98.5 358.5 98.5 377.5 161.5 377.5 161.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 130 365.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="130,368",
			rects="98.5,358.5,161.5,377.5",
			width=0.875];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 358.5 16 377.5 94 377.5 94 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 55 365.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="55,368",
			rects="16,358.5,94,377.5",
			width=1.0833];
		region_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 166 358.5 166 377.5 234 377.5 234 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 200 365.5 0 52 11 -region_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=region_file,
			pos="200,368",
			rects="166,358.5,234,377.5",
			width=0.94444];
		output_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 455.5 358.5 455.5 377.5 536.5 377.5 536.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 496 365.5 0 65 11 -output_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_name,
			pos="496,368",
			rects="455.5,358.5,536.5,377.5",
			width=1.125];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 311.5 358.5 311.5 377.5 384.5 377.5 384.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 348 365.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="348,368",
			rects="311.5,358.5,384.5,377.5",
			width=1.0139];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 366 8 366 63 486 63 486 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 420 15 0 92 16 -Workflow Outputs ",
			bb="366,8,486,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="420,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		pindel_region_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 374.5 35.5 374.5 54.5 477.5 54.5 477.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 426 42.5 0 87 17 -pindel_region_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=pindel_region_vcf,
			pos="426,45",
			rects="374.5,35.5,477.5,54.5",
			width=1.4306];
	}
	pindel_region	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 201 305.5 201 324.5 293 324.5 293 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 247 312.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="247,315",
		rects="201,305.5,293,324.5",
		width=1.2778];
	insert_size -> pindel_region	[_draw_="c 7 -#000000 B 7 272.39 358.68 271.56 351.48 269.6 340.99 265 333 264.55 332.22 264.05 331.45 263.52 330.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 265.49 329.23 259.02 325.61 261.82 332.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 290 335.6 0 44 11 -insert_size ",
		label=insert_size,
		lp="290,337.5",
		pos="e,258.02,324.47 272.39,358.68 271.56,351.48 269.6,340.99 265,333 264.55,332.22 264.05,331.45 263.52,330.7"];
	pindel2vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 380 215.5 380 234.5 472 234.5 472 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 426 222.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="426,225",
		rects="380,215.5,472,234.5",
		width=1.2778];
	ref_name -> pindel2vcf	[_draw_="c 7 -#000000 B 10 421.24 358.84 423.15 345.8 426.72 319.47 428 297 428.23 293.01 428.06 292 428 288 427.75 272.73 427.17 255.34 \
426.69 242.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 429.14 242.83 426.42 235.93 424.25 243.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 447.5 290.6 0 39 8 -ref_name ",
		label=ref_name,
		lp="447.5,292.5",
		pos="e,426.36,234.42 421.24,358.84 423.15,345.8 426.72,319.47 428,297 428.23,293.01 428.06,292 428,288 427.75,272.73 427.17,255.34 426.69,\
242.88"];
	reference -> pindel2vcf	[_draw_="c 7 -#000000 B 7 125.61 358.5 118.13 342.69 105.26 308.5 122 288 152.94 250.11 293.01 234.78 371.77 229.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 371.81 231.52 378.62 228.58 371.47 226.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 142 290.6 0 40 9 -reference ",
		label=reference,
		lp="142,292.5",
		pos="e,380.13,228.48 125.61,358.5 118.13,342.69 105.26,308.5 122,288 152.94,250.11 293.01,234.78 371.77,229.06"];
	reference -> pindel_region	[_draw_="c 7 -#000000 B 7 138.12 358.73 146.24 350.93 159.44 339.51 173 333 179.32 329.97 186.21 327.46 193.16 325.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 193.75 327.77 199.85 323.56 192.45 323.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 193 335.6 0 40 9 -reference ",
		label=reference,
		lp="193,337.5",
		pos="e,201.31,323.16 138.12,358.73 146.24,350.93 159.44,339.51 173,333 179.32,329.97 186.21,327.46 193.16,325.39"];
	normal_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 64.4 358.73 74.1 350.71 90.03 338.9 106 333 133.55 322.82 165.98 318.43 192.8 316.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 192.93 319.1 199.78 316.25 192.65 314.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 131.5 335.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="131.5,337.5",
		pos="e,201.29,316.16 64.399,358.73 74.1,350.71 90.029,338.9 106,333 133.55,322.82 165.98,318.43 192.8,316.65"];
	region_file -> pindel_region	[_draw_="c 7 -#000000 B 7 203.79 358.75 207.46 351.4 213.54 340.65 221 333 222.25 331.71 223.62 330.47 225.05 329.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 226.17 331.51 230.35 325.39 223.26 327.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 242.5 335.6 0 43 11 -region_file ",
		label=region_file,
		lp="242.5,337.5",
		pos="e,231.57,324.5 203.79,358.75 207.46,351.4 213.54,340.65 221,333 222.25,331.71 223.62,330.47 225.05,329.29"];
	output_name -> pindel2vcf	[_draw_="c 7 -#000000 B 7 493.86 358.87 489.85 344.24 480.47 312.67 468 288 459.37 270.93 446.79 253 437.65 240.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 439.84 239.67 433.64 235.6 435.94 242.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 499.5 290.6 0 55 11 -output_name ",
		label=output_name,
		lp="499.5,292.5",
		pos="e,432.72,234.4 493.86,358.87 489.85,344.24 480.47,312.67 468,288 459.37,270.93 446.79,253 437.65,240.84"];
	tumor_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 341.67 358.75 335.27 350.97 324.67 339.55 313 333 309.07 330.79 304.84 328.86 300.5 327.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 301.43 324.92 294.02 324.91 299.81 329.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 347 335.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="347,337.5",
		pos="e,292.59,324.41 341.67,358.75 335.27,350.97 324.67,339.55 313,333 309.07,330.79 304.84,328.86 300.5,327.18"];
	fix_vcf_header	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 384.5 170.5 384.5 189.5 467.5 189.5 467.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 426 177.5 0 67 14 -fix vcf header ",
		height=0.27778,
		label="fix vcf header",
		pos="426,180",
		rects="384.5,170.5,467.5,189.5",
		width=1.1528];
	pindel2vcf -> fix_vcf_header	[_draw_="c 7 -#000000 B 4 426 215.71 426 210.59 426 203.85 426 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 428.45 197.78 426 190.78 423.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 432.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="432.5,202.5",
		pos="e,426,189.27 426,215.71 426,210.59 426,203.85 426,197.67"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 395 80.5 395 99.5 457 99.5 457 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 426 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="426,90",
		rects="395,80.5,457,99.5",
		width=0.86111];
	index -> pindel_region_vcf	[_draw_="c 7 -#000000 B 4 426 80.71 426 75.59 426 68.85 426 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 428.45 62.78 426 55.78 423.55 62.78 ",
		pos="e,426,54.265 426,80.709 426,75.593 426,68.848 426,62.666"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 361.5 125.5 361.5 144.5 490.5 144.5 490.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 426 132.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="426,135",
		rects="361.5,125.5,490.5,144.5",
		width=1.7917];
	remove_end_tags -> index	[_draw_="c 7 -#000000 B 4 426 125.71 426 120.59 426 113.85 426 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 428.45 107.78 426 100.78 423.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 432.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="432.5,112.5",
		pos="e,426,99.265 426,125.71 426,120.59 426,113.85 426,107.67"];
	fix_vcf_header -> remove_end_tags	[_draw_="c 7 -#000000 B 4 426 170.71 426 165.59 426 158.85 426 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 428.45 152.78 426 145.78 423.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 432.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="432.5,157.5",
		pos="e,426,144.27 426,170.71 426,165.59 426,158.85 426,152.67"];
	cat	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 282 260.5 282 279.5 314 279.5 314 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 267.5 0 16 3 -cat ",
		height=0.27778,
		label=cat,
		pos="298,270",
		rects="282,260.5,314,279.5",
		width=0.44444];
	cat -> pindel2vcf	[_draw_="c 7 -#000000 B 4 313.95 263.64 333.67 257.02 367.71 245.58 393.12 237.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 393.74 239.42 399.6 234.87 392.18 234.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 394.5 245.6 0 43 10 -pindel_out ",
		label=pindel_out,
		lp="394.5,247.5",
		pos="e,401.03,234.39 313.95,263.64 333.67,257.02 367.71,245.58 393.12,237.05"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 201.01 311.93 176.61 309.14 154.08 302.7 167 288 180.62 272.5 239.8 270.39 273.78 270.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 273.69 272.95 280.72 270.57 273.74 268.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 191 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="191,292.5",
		pos="e,282.23,270.58 201.01,311.93 176.61,309.14 154.08,302.7 167,288 180.62,272.5 239.8,270.39 273.78,270.51"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 231.9 305.53 224.94 300.53 219.19 294.03 224 288 230.2 280.22 254.8 275.71 273.95 273.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 274.11 275.76 280.78 272.53 273.55 270.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 248 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="248,292.5",
		pos="e,282.29,272.35 231.9,305.53 224.94,300.53 219.19,294.03 224,288 230.2,280.22 254.8,275.71 273.95,273.31"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 258.32 305.51 261.79 302.84 265.59 299.84 269 297 273.61 293.16 278.5 288.86 282.94 284.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 284.35 286.91 287.89 280.39 281.06 283.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 302 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="302,292.5",
		pos="e,289.01,279.37 258.32,305.51 261.79,302.84 265.59,299.84 269,297 273.61,293.16 278.5,288.86 282.94,284.88"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 292.63 309.14 307.52 306.54 321.42 302.68 326 297 330.29 291.69 326.61 286.46 320.68 282.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 322.16 280.12 314.92 278.52 319.58 284.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 351 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="351,292.5",
		pos="e,313.63,277.73 292.63,309.14 307.52,306.54 321.42,302.68 326,297 330.29,291.69 326.61,286.46 320.68,282.09"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 292.97 314.12 325.53 313.11 365.24 309.27 376 297 392.38 278.33 350.46 273.03 321.92 271.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 322.18 269.1 315.09 271.26 321.98 274 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 403 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="403,292.5",
		pos="e,313.58,271.2 292.97,314.12 325.53,313.11 365.24,309.27 376,297 392.38,278.33 350.46,273.03 321.92,271.55"];
}