digraph workflow {
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		bb="0,0,664,458",
		bgcolor="#eeeeee",
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		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
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		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
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		label="\N",
		shape=record,
		style=filled,
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
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			label="Workflow Inputs",
			lheight=0.15,
			lp="58,440.5",
			lwidth=1.17,
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			style=dashed
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			rects="103.5,403.5,166.5,422.5",
			width=0.875];
		readgroups	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 295.5 403.5 295.5 422.5 366.5 422.5 366.5 403.5 ",
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			label=readgroups,
			pos="331,413",
			rects="295.5,403.5,366.5,422.5",
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			fillcolor="#94DDF4",
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			rects="233,403.5,291,422.5",
			width=0.80556];
		known_indels	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 403.5 16.5 422.5 99.5 422.5 99.5 403.5 ",
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			fillcolor="#94DDF4",
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			label=known_indels,
			pos="58,413",
			rects="16.5,403.5,99.5,422.5",
			width=1.1528];
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			fillcolor="#94DDF4",
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			label=dbsnp_vcf,
			pos="479,413",
			rects="446,403.5,512,422.5",
			width=0.91667];
		bqsr_intervals	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 516 403.5 516 422.5 602 422.5 602 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 559 410.5 0 70 14 -bqsr_intervals ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=bqsr_intervals,
			pos="559,413",
			rects="516,403.5,602,422.5",
			width=1.1944];
		mills	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 606.5 403.5 606.5 422.5 647.5 422.5 647.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 627 410.5 0 25 5 -mills ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mills,
			pos="627,413",
			rects="606.5,403.5,647.5,422.5",
			width=0.56944];
		final_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 370.5 403.5 370.5 422.5 441.5 422.5 441.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 406 410.5 0 55 10 -final_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=final_name,
			pos="406,413",
			rects="370.5,403.5,441.5,422.5",
			width=0.98611];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 132 8 132 63 378 63 378 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 186 15 0 92 16 -Workflow Outputs ",
			bb="132,8,378,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="186,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		mark_duplicates_metrics_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 210 35.5 210 54.5 370 54.5 370 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 290 42.5 0 144 28 -mark_duplicates_metrics_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mark_duplicates_metrics_file,
			pos="290,45",
			rects="210,35.5,370,54.5",
			width=2.2222];
		final_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 140.5 35.5 140.5 54.5 205.5 54.5 205.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 173 42.5 0 49 9 -final_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=final_bam,
			pos="173,45",
			rects="140.5,35.5,205.5,54.5",
			width=0.90278];
	}
	apply_bqsr	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 174 125.5 174 144.5 248 144.5 248 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 211 132.5 0 58 10 -apply BQSR ",
		height=0.27778,
		label="apply BQSR",
		pos="211,135",
		rects="174,125.5,248,144.5",
		width=1.0278];
	reference -> apply_bqsr	[_draw_="c 7 -#000000 B 10 142.95 403.74 151.23 394.23 163 377.77 163 361 163 361 163 361 163 179 163 165.88 173.08 155.75 184 148.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 185.11 150.82 189.9 145.15 182.62 146.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 183 268.1 0 40 9 -reference ",
		label=reference,
		lp="183,270",
		pos="e,191.2,144.39 142.95,403.74 151.23,394.23 163,377.77 163,361 163,361 163,361 163,179 163,165.88 173.08,155.75 184,148.63"];
	align	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 196 350.5 196 369.5 354 369.5 354 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 275 357.5 0 142 26 -align with bwa_mem and tag ",
		height=0.27778,
		label="align with bwa_mem and tag",
		pos="275,360",
		rects="196,350.5,354,369.5",
		width=2.1944];
	reference -> align	[_draw_="c 7 -#000000 B 10 152.14 403.66 160.36 399.27 170.11 393.45 178 387 182.14 383.61 181.35 380.64 186 378 189.75 375.87 193.72 374 \
197.82 372.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 198.64 374.67 204.4 370 196.99 370.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 206 380.6 0 40 9 -reference ",
		label=reference,
		lp="206,382.5",
		pos="e,205.83,369.49 152.14,403.66 160.36,399.27 170.11,393.45 178,387 182.14,383.61 181.35,380.64 186,378 189.75,375.87 193.72,374 197.82,\
372.36"];
	bqsr	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 342.5 170.5 342.5 189.5 447.5 189.5 447.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 395 177.5 0 89 17 -create BQSR table ",
		height=0.27778,
		label="create BQSR table",
		pos="395,180",
		rects="342.5,170.5,447.5,189.5",
		width=1.4583];
	reference -> bqsr	[_draw_="c 7 -#000000 B 19 147.21 403.7 153.47 399.15 161.02 393.18 167 387 181.16 372.37 178.52 363.22 194 350 227.41 321.48 239.93 317.63 \
282 305 312.84 295.74 323.12 306.12 354 297 370.2 292.22 378.62 294.05 388 280 404.59 255.16 401.92 218.57 398.47 197.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 400.91 197.22 397.22 190.79 396.09 198.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 400 290.6 0 40 9 -reference ",
		label=reference,
		lp="400,292.5",
		pos="e,396.95,189.3 147.21,403.7 153.47,399.15 161.02,393.18 167,387 181.16,372.37 178.52,363.22 194,350 227.41,321.48 239.93,317.63 \
282,305 312.84,295.74 323.12,306.12 354,297 370.2,292.22 378.62,294.05 388,280 404.59,255.16 401.92,218.57 398.47,197.53"];
	readgroups -> align	[_draw_="c 7 -#000000 B 7 324.95 403.55 319.47 396.26 310.92 385.72 302 378 300.42 376.64 298.73 375.31 296.98 374.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 298.57 372.14 291.39 370.26 295.82 376.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 331.5 380.6 0 43 9 -readgroup ",
		label=readgroup,
		lp="331.5,382.5",
		pos="e,290.14,369.41 324.95,403.55 319.47,396.26 310.92,385.72 302,378 300.42,376.64 298.73,375.31 296.98,374.03"];
	fastq_1s -> align	[_draw_="c 7 -#000000 B 10 209.33 403.52 214.57 398.72 221.2 392.58 227 387 231.08 383.08 231.33 381.19 236 378 238.67 376.18 241.57 374.49 \
244.53 372.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 245.37 375.25 250.61 370 243.24 370.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 251.5 380.6 0 31 7 -fastq_1 ",
		label=fastq_1,
		lp="251.5,382.5",
		pos="e,251.97,369.34 209.33,403.52 214.57,398.72 221.2,392.58 227,387 231.08,383.08 231.33,381.19 236,378 238.67,376.18 241.57,374.49 \
244.53,372.93"];
	fastq_2s -> align	[_draw_="c 7 -#000000 B 4 264.15 403.58 265.96 396.45 268.62 386.02 270.85 377.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 273.16 378.12 272.52 370.73 268.42 376.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 285.5 380.6 0 31 7 -fastq_2 ",
		label=fastq_2,
		lp="285.5,382.5",
		pos="e,272.89,369.26 264.15,403.58 265.96,396.45 268.62,386.02 270.85,377.27"];
	known_indels -> bqsr	[_draw_="c 7 -#000000 B 13 71.34 403.63 116.62 375.22 261.83 283.99 266 280 273.84 272.5 270.77 265.7 280 260 300.64 247.24 311.68 261.5 \
334 252 359.16 241.29 377.59 213.99 387.28 196.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 389.29 197.97 390.4 190.64 384.96 195.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 278.5 290.6 0 51 11 -known_sites ",
		label=known_sites,
		lp="278.5,292.5",
		pos="e,391.1,189.3 71.342,403.63 116.62,375.22 261.83,283.99 266,280 273.84,272.5 270.77,265.7 280,260 300.64,247.24 311.68,261.5 334,\
252 359.16,241.29 377.59,213.99 387.28,196.54"];
	dbsnp_vcf -> bqsr	[_draw_="c 7 -#000000 B 10 466.03 403.53 454.02 394.55 438 379.18 438 361 438 361 438 361 438 224 438 211.48 428.77 201.33 418.86 194.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 420.44 192.15 413.25 190.3 417.72 196.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 463.5 290.6 0 51 11 -known_sites ",
		label=known_sites,
		lp="463.5,292.5",
		pos="e,411.99,189.46 466.03,403.53 454.02,394.55 438,379.18 438,361 438,361 438,361 438,224 438,211.48 428.77,201.33 418.86,194.04"];
	bqsr_intervals -> bqsr	[_draw_="c 7 -#000000 B 10 552.19 403.54 545.09 393.87 535 377.24 535 361 535 361 535 361 535 224 535 206.2 493.11 195 455.15 188.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 455.93 186.16 448.62 187.45 455.14 191 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 553 290.6 0 36 9 -intervals ",
		label=intervals,
		lp="553,292.5",
		pos="e,447.13,187.2 552.19,403.54 545.09,393.87 535,377.24 535,361 535,361 535,361 535,224 535,206.2 493.11,195 455.15,188.52"];
	mills -> bqsr	[_draw_="c 7 -#000000 B 10 622.35 403.62 617.32 393.74 610 376.68 610 361 610 361 610 361 610 224 610 192.35 519.29 183.68 455.71 181.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 455.9 179.04 448.83 181.27 455.75 183.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 635.5 290.6 0 51 11 -known_sites ",
		label=known_sites,
		lp="635.5,292.5",
		pos="e,447.32,181.22 622.35,403.62 617.32,393.74 610,376.68 610,361 610,361 610,361 610,224 610,192.35 519.29,183.68 455.71,181.48"];
	final_name -> apply_bqsr	[_draw_="c 7 -#000000 B 25 398.3 403.52 390.83 395.18 379.3 381.99 370 370 363.35 361.43 363.57 357.77 356 350 347.13 340.9 344.73 337.9 \
333 333 311.83 324.15 303.38 333.34 282 325 261.1 316.85 257.13 311.48 240 297 220.82 280.78 211 273.62 211 248.5 211 248.5 211 \
248.5 211 179 211 170.31 211 160.63 211 152.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 213.45 152.76 211 145.76 208.55 152.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 249.5 268.1 0 55 11 -output_name ",
		label=output_name,
		lp="249.5,270",
		pos="e,211,144.24 398.3,403.52 390.83,395.18 379.3,381.99 370,370 363.35,361.43 363.57,357.77 356,350 347.13,340.9 344.73,337.9 333,333 \
311.83,324.15 303.38,333.34 282,325 261.1,316.85 257.13,311.48 240,297 220.82,280.78 211,273.62 211,248.5 211,248.5 211,248.5 211,\
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	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 284 305.5 284 324.5 384 324.5 384 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 334 312.5 0 84 15 -Samtools: merge ",
		height=0.27778,
		label="Samtools: merge",
		pos="334,315",
		rects="284,305.5,384,324.5",
		width=1.3889];
	final_name -> merge	[_draw_="c 7 -#000000 B 10 401.35 403.7 394.42 391.53 380.71 368.33 367 350 360.96 341.93 359 340.24 352 333 351.14 332.11 350.25 331.21 \
349.34 330.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 351.14 328.64 344.4 325.54 347.74 332.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 392 358.1 0 24 4 -name ",
		label=name,
		lp="392,360",
		pos="e,343.31,324.49 401.35,403.7 394.42,391.53 380.71,368.33 367,350 360.96,341.93 359,340.24 352,333 351.14,332.11 350.25,331.21 349.34,\
330.3"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 142 80.5 142 99.5 234 99.5 234 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 188 87.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="188,90",
		rects="142,80.5,234,99.5",
		width=1.2778];
	apply_bqsr -> index_bam	[_draw_="c 7 -#000000 B 4 206.57 125.71 203.64 120.24 199.71 112.9 196.23 106.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 198.6 105.62 193.13 100.6 194.28 107.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 211.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="211.5,112.5",
		pos="e,192.42,99.265 206.57,125.71 203.64,120.24 199.71,112.9 196.23,106.38"];
	index_bam -> final_bam	[_draw_="c 7 -#000000 B 4 185.11 80.71 183.28 75.47 180.86 68.53 178.66 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 181 61.5 176.38 55.69 176.37 63.11 ",
		pos="e,175.88,54.265 185.11,80.709 183.28,75.474 180.86,68.534 178.66,62.235"];
	name_sort	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 280.5 260.5 280.5 279.5 387.5 279.5 387.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 334 267.5 0 91 16 -sort BAM by name ",
		height=0.27778,
		label="sort BAM by name",
		pos="334,270",
		rects="280.5,260.5,387.5,279.5",
		width=1.4861];
	mark_duplicates_and_sort	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 218 215.5 218 234.5 356 234.5 356 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 287 222.5 0 122 24 -Mark duplicates and Sort ",
		height=0.27778,
		label="Mark duplicates and Sort",
		pos="287,225",
		rects="218,215.5,356,234.5",
		width=1.9167];
	name_sort -> mark_duplicates_and_sort	[_draw_="c 7 -#000000 B 4 324.94 260.71 318.44 254.76 309.53 246.61 301.98 239.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 303.97 238.2 297.15 235.29 300.66 241.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 323.5 245.6 0 19 3 -bam ",
		label=bam,
		lp="323.5,247.5",
		pos="e,296.03,234.27 324.94,260.71 318.44,254.76 309.53,246.61 301.98,239.7"];
	align -> merge	[_draw_="c 7 -#000000 B 4 286.66 350.5 294.9 344.5 306.12 336.32 315.57 329.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 316.93 331.47 321.14 325.37 314.04 327.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 320.5 335.6 0 23 4 -bams ",
		label=bams,
		lp="320.5,337.5",
		pos="e,322.37,324.48 286.66,350.5 294.9,344.5 306.12,336.32 315.57,329.43"];
	mark_duplicates_and_sort -> mark_duplicates_metrics_file	[_draw_="c 7 -#000000 B 10 287.31 215.76 287.6 207.1 288 193.1 288 181 288 181 288 181 288 89 288 80.3 288.41 70.62 288.86 62.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 291.3 62.89 289.29 55.75 286.41 62.58 ",
		pos="e,289.39,54.238 287.31,215.76 287.6,207.1 288,193.1 288,181 288,181 288,181 288,89 288,80.298 288.41,70.617 288.86,62.647"];
	mark_duplicates_and_sort -> apply_bqsr	[_draw_="c 7 -#000000 B 4 279.71 215.56 266.74 200.54 239.51 169.01 223.5 150.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 225.57 149.13 219.14 145.43 221.86 152.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 265.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="265.5,180",
		pos="e,218.15,144.28 279.71,215.56 266.74,200.54 239.51,169.01 223.5,150.47"];
	mark_duplicates_and_sort -> bqsr	[_draw_="c 7 -#000000 B 7 302.48 215.61 312.9 210.16 327.05 203.14 340 198 345.43 195.84 351.24 193.79 356.99 191.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 357.37 194.35 363.29 189.89 355.88 189.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 349.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="349.5,202.5",
		pos="e,364.73,189.43 302.48,215.61 312.9,210.16 327.05,203.14 340,198 345.43,195.84 351.24,193.79 356.99,191.9"];
	merge -> name_sort	[_draw_="c 7 -#000000 B 4 334 305.71 334 300.59 334 293.85 334 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 336.45 287.78 334 280.78 331.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 343.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="343.5,292.5",
		pos="e,334,279.27 334,305.71 334,300.59 334,293.85 334,287.67"];
	bqsr -> apply_bqsr	[_draw_="c 7 -#000000 B 4 358.65 170.5 329.04 163.58 287.1 153.79 255.49 146.4 ",
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