@prefix rdf:   <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix ScatterMethod: <https://w3id.org/cwl/cwl#ScatterMethod/> .
@prefix xsd:   <http://www.w3.org/2001/XMLSchema#> .
@prefix DockerRequirement: <https://w3id.org/cwl/cwl#DockerRequirement/> .
@prefix cwl:   <https://w3id.org/cwl/cwl#> .
@prefix Workflow: <https://w3id.org/cwl/cwl#Workflow/> .
@prefix sld:   <https://w3id.org/cwl/salad#> .
@prefix rdfs:  <http://www.w3.org/2000/01/rdf-schema#> .
@prefix ns1:   <http://commonwl.org/cwltool#> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed/threads>
        cwl:source  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#threads_fastqc> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#html_report>
        cwl:outputSource  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/html_report> ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/trim_tail1>
        sld:type  xsd:int , sld:null .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp>
        cwl:in             <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/threads> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/fastq2> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/fastq1> ;
        cwl:out            <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/paired_fastq2> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/unpaired_fastq2> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/html_report> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/unpaired_fastq1> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/paired_fastq1> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/json_report> ;
        cwl:run            <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl> ;
        cwl:scatter        ( <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/fastq1> <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/fastq2> ) ;
        cwl:scatterMethod  ScatterMethod:dotproduct .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw_zip>
        cwl:outputSource  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw/fastqc_zip> ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/json_report>
        sld:type  cwl:File .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw/fastq2>
        cwl:source  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastq2> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed>
        cwl:in   <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed/fastq1> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed/threads> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed/fastq2> ;
        cwl:out  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed/fastqc_zip> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed/fastqc_html> ;
        cwl:run  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed/fastq1>
        cwl:source  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/paired_fastq1> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#threads_fastqc>
        sld:type  xsd:int , sld:null .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl>
        a                        cwl:Workflow ;
        rdfs:comment             "Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)\n" ;
        rdfs:label               "trimmed_fastq" ;
        ns1:original_cwlVersion  "v1.2" ;
        Workflow:steps           <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp> ;
        cwl:cwlVersion           cwl:v1.2 ;
        cwl:inputs               <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastq1> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#threads_fastqc> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastq2> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#threads_fastp> ;
        cwl:outputs              <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#json_report> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw_zip> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw_html> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#paired_R1> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_paired_html> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#unpaired_R2> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#paired_R2> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#unpaired_R1> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_paired_zip> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#html_report> ;
        cwl:requirements         [ a  cwl:ScatterFeatureRequirement ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl#fastqc/fastqc_zip>
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] ;
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp>
        a                        cwl:Operation ;
        rdfs:label               "fastp" ;
        ns1:original_cwlVersion  "v1.2" ;
        cwl:cwlVersion           cwl:v1.2 ;
        cwl:inputs               <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/cut_right_mean_quality> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/trim_tail1> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/cut_right_window_size> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/fastq1> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/fastq2> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/threads> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/length_required> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/cut_right> ;
        cwl:outputs              <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/paired_fastq1> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/unpaired_fastq1> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/unpaired_fastq2> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/html_report> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/json_report> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/paired_fastq2> ;
        cwl:requirements         [ a                             cwl:DockerRequirement ;
                                   DockerRequirement:dockerPull  "quay.io/biocontainers/fastp:0.20.0--hdbcaa40_0"
                                 ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw_html>
        cwl:outputSource  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw/fastqc_html> ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/fastq2>
        sld:type  cwl:File .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastq2>
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw/fastq1>
        cwl:source  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastq1> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/fastq2>
        cwl:source  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastq2> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl#fastqc/threads>
        sld:type  xsd:int , sld:null .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl#fastqc>
        a                        cwl:Operation ;
        rdfs:comment             "Run fastqc on raw reads in FASTQ format (single or paired end)\n" ;
        rdfs:label               "fastqc" ;
        ns1:original_cwlVersion  "v1.2" ;
        cwl:cwlVersion           cwl:v1.2 ;
        cwl:inputs               <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl#fastqc/threads> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl#fastqc/fastq2> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl#fastqc/fastq1> ;
        cwl:outputs              <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl#fastqc/fastqc_html> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl#fastqc/fastqc_zip> ;
        cwl:requirements         [ a                             cwl:DockerRequirement ;
                                   DockerRequirement:dockerPull  "quay.io/biocontainers/fastqc:0.11.8--1"
                                 ] ;
        cwl:requirements         [ a                             cwl:DockerRequirement ;
                                   DockerRequirement:dockerPull  "quay.io/biocontainers/fastqc:0.11.8--1"
                                 ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#json_report>
        cwl:outputSource  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/json_report> ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/fastq1>
        sld:type  cwl:File .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw>
        cwl:in   <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw/threads> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw/fastq1> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw/fastq2> ;
        cwl:out  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw/fastqc_zip> , <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw/fastqc_html> ;
        cwl:run  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastq1>
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_paired_html>
        cwl:outputSource  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed/fastqc_html> ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#threads_fastp>
        sld:type  xsd:int , sld:null .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#paired_R2>
        cwl:outputSource  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/paired_fastq2> ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/threads>
        cwl:source  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#threads_fastp> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/fastq1>
        cwl:source  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastq1> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_raw/threads>
        cwl:source  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#threads_fastqc> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#unpaired_R2>
        cwl:outputSource  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/unpaired_fastq2> ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl#fastqc/fastq2>
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] ;
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/threads>
        sld:type  xsd:int , sld:null .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/unpaired_fastq2>
        sld:type  cwl:File .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#paired_R1>
        cwl:outputSource  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/paired_fastq1> ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/paired_fastq2>
        sld:type  cwl:File .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/html_report>
        sld:type  cwl:File .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#unpaired_R1>
        cwl:outputSource  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/unpaired_fastq1> ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/length_required>
        sld:type  xsd:int , sld:null .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl#fastqc/fastq1>
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] ;
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/cut_right>
        sld:type  xsd:boolean , sld:null .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/cut_right_mean_quality>
        sld:type  xsd:int , sld:null .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastqc.cwl#fastqc/fastqc_html>
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] ;
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/unpaired_fastq1>
        sld:type  cwl:File .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/paired_fastq1>
        sld:type  cwl:File .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/fastp.cwl#fastp/cut_right_window_size>
        sld:type  xsd:int , sld:null .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed/fastq2>
        cwl:source  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastp/paired_fastq2> .

<https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_paired_zip>
        cwl:outputSource  <https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl#fastqc_pre_processed/fastqc_zip> ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .