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# Dockerfile
#
# Software:         MEA
# Software Version: 1.0 (commit c33981de99dfd20f76fd5cd904e2f630eef0f4ae)
# Description:      Methylomic and Epigenomic Allele-specific analysis pipeline
# Website:          https://github.com/julienrichardalbert/MEA
# Provides:         alea.jar
# Base Image:       biowardrobe2/mea:v0.0.1
# Build Cmd:        docker build --rm -t biowardrobe2/mea:v0.0.1 -f mea-Dockerfile .
# Pull Cmd:         docker pull biowardrobe2/mea:v0.0.1
# Run Cmd:          docker run --rm -ti biowardrobe2/mea:v0.0.1 /bin/bash
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### Base Image
FROM biowardrobe2/scidap:v0.0.3
MAINTAINER Michael Kotliar "misha.kotliar@gmail.com"
ENV DEBIAN_FRONTEND noninteractive

################## BEGIN INSTALLATION ######################

WORKDIR /tmp


ENV VERSION_MEA_COMMIT c33981de99dfd20f76fd5cd904e2f630eef0f4ae
ENV URL_MEA "https://github.com/julienrichardalbert/MEA.git"


### Installing MEA

RUN git clone ${URL_MEA} &&\
    cd MEA &&\
    git checkout ${VERSION_MEA_COMMIT} &&\
    tar xzf ./dist/mea.1.0.tar.gz &&\
    cp mea/bin/* /usr/local/bin/ &&\
    rm -rf /tmp/*