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tumor_target_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5005.5 35.5 5005.5 54.5 5136.5 54.5 5136.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5071 42.5 0 115 21 -tumor_target_coverage ", fillcolor="#94DDF4", height=0.27778, label=tumor_target_coverage, pos="5071,45", rects="5005.5,35.5,5136.5,54.5", width=1.8194]; varscan_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9054.5 35.5 9054.5 54.5 9181.5 54.5 9181.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9118 42.5 0 111 22 -varscan_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=varscan_unfiltered_vcf, pos="9118,45", rects="9054.5,35.5,9181.5,54.5", width=1.7639]; normal_snv_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7072.5 35.5 7072.5 54.5 7247.5 54.5 7247.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7160 42.5 0 159 28 -normal_snv_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=normal_snv_bam_readcount_tsv, pos="7160,45", rects="7072.5,35.5,7247.5,54.5", width=2.4306]; intervals_target [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5141 35.5 5141 54.5 5235 54.5 5235 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5188 42.5 0 78 16 -intervals_target ", fillcolor="#94DDF4", height=0.27778, label=intervals_target, pos="5188,45", rects="5141,35.5,5235,54.5", width=1.3056]; tumor_insert_size_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4100 35.5 4100 54.5 4246 54.5 4246 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4173 42.5 0 130 25 -tumor_insert_size_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_insert_size_metrics, pos="4173,45", rects="4100,35.5,4246,54.5", width=2.0278]; tumor_bin_level_ratios [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5239 35.5 5239 54.5 5367 54.5 5367 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5303 42.5 0 112 22 -tumor_bin_level_ratios ", fillcolor="#94DDF4", height=0.27778, label=tumor_bin_level_ratios, pos="5303,45", rects="5239,35.5,5367,54.5", width=1.7778]; tumor_per_base_coverage_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4250 35.5 4250 54.5 4438 54.5 4438 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4344 42.5 0 172 31 -tumor_per_base_coverage_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_per_base_coverage_metrics, pos="4344,45", rects="4250,35.5,4438,54.5", width=2.6111]; strelka_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7252 35.5 7252 54.5 7362 54.5 7362 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7307 42.5 0 94 20 -strelka_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=strelka_filtered_vcf, pos="7307,45", rects="7252,35.5,7362,54.5", width=1.5278]; tumor_alignment_summary_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4442 35.5 4442 54.5 4636 54.5 4636 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4539 42.5 0 178 31 -tumor_alignment_summary_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_alignment_summary_metrics, pos="4539,45", rects="4442,35.5,4636,54.5", width=2.6944]; final_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7366 35.5 7366 54.5 7424 54.5 7424 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7395 42.5 0 42 9 -final_tsv ", fillcolor="#94DDF4", height=0.27778, label=final_tsv, pos="7395,45", rects="7366,35.5,7424,54.5", width=0.80556]; mutect_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7428.5 35.5 7428.5 54.5 7551.5 54.5 7551.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7490 42.5 0 107 21 -mutect_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=mutect_unfiltered_vcf, pos="7490,45", rects="7428.5,35.5,7551.5,54.5", width=1.7083]; 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normal_per_target_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2044.5 35.5 2044.5 54.5 2209.5 54.5 2209.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2127 42.5 0 149 28 -normal_per_target_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_per_target_hs_metrics, pos="2127,45", rects="2044.5,35.5,2209.5,54.5", width=2.2917]; diploid_variants [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6786.5 35.5 6786.5 54.5 6881.5 54.5 6881.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6834 42.5 0 79 16 -diploid_variants ", fillcolor="#94DDF4", height=0.27778, label=diploid_variants, pos="6834,45", rects="6786.5,35.5,6881.5,54.5", width=1.3194]; normal_cram [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2832.5 35.5 2832.5 54.5 2913.5 54.5 2913.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2873 42.5 0 65 11 -normal_cram ", fillcolor="#94DDF4", height=0.27778, label=normal_cram, pos="2873,45", rects="2832.5,35.5,2913.5,54.5", width=1.125]; normal_alignment_summary_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2214 35.5 2214 54.5 2414 54.5 2414 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2314 42.5 0 184 32 -normal_alignment_summary_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_alignment_summary_metrics, pos="2314,45", rects="2214,35.5,2414,54.5", width=2.7778]; 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varscan_strand_filter [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6384.5 186.5 6384.5 205.5 6503.5 205.5 6503.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6444 193.5 0 103 21 -varscan_strand_filter ", fillcolor="#94DDF4", height=0.27778, label=varscan_strand_filter, pos="6444,196", rects="6384.5,186.5,6503.5,205.5", width=1.6528]; mutect_max_alt_alleles_in_normal_count [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5726 186.5 5726 205.5 5946 205.5 5946 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5836 193.5 0 204 38 -mutect_max_alt_alleles_in_normal_count ", fillcolor="#94DDF4", height=0.27778, label=mutect_max_alt_alleles_in_normal_count, pos="5836,196", rects="5726,186.5,5946,205.5", width=3.0556]; tumor_sequence [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4610.5 186.5 4610.5 205.5 4945.5 205.5 4945.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4778 193.5 0 319 60 -tumor_sequence: MT sequencing data and readgroup information ", fillcolor="#94DDF4", height=0.27778, label="tumor_sequence: MT sequencing data and readgroup information", pos="4778,196", rects="4610.5,186.5,4945.5,205.5", width=4.6528]; picard_metric_accumulation_level [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1213 186.5 1213 205.5 1397 205.5 1397 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1305 193.5 0 168 32 -picard_metric_accumulation_level ", fillcolor="#94DDF4", height=0.27778, label=picard_metric_accumulation_level, pos="1305,196", rects="1213,186.5,1397,205.5", width=2.5556]; annotate_coding_only [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6508 186.5 6508 205.5 6632 205.5 6632 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6570 193.5 0 108 20 -annotate_coding_only ", fillcolor="#94DDF4", height=0.27778, label=annotate_coding_only, pos="6570,196", rects="6508,186.5,6632,205.5", width=1.7222]; normal_sample_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6636.5 186.5 6636.5 205.5 6761.5 205.5 6761.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6699 193.5 0 109 18 -normal_sample_name ", fillcolor="#94DDF4", height=0.27778, label=normal_sample_name, pos="6699,196", rects="6636.5,186.5,6761.5,205.5", width=1.7361]; vep_custom_annotations [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6765.5 186.5 6765.5 205.5 6904.5 205.5 6904.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6835 193.5 0 123 22 -vep_custom_annotations ", fillcolor="#94DDF4", height=0.27778, label=vep_custom_annotations, pos="6835,196", rects="6765.5,186.5,6904.5,205.5", width=1.9306]; varscan_max_normal_freq [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6909 186.5 6909 205.5 7055 205.5 7055 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6982 193.5 0 130 23 -varscan_max_normal_freq ", fillcolor="#94DDF4", height=0.27778, label=varscan_max_normal_freq, pos="6982,196", rects="6909,186.5,7055,205.5", width=2.0278]; summary_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2786.5 186.5 2786.5 205.5 2897.5 205.5 2897.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2842 193.5 0 95 17 -summary_intervals ", fillcolor="#94DDF4", height=0.27778, label=summary_intervals, pos="2842,196", rects="2786.5,186.5,2897.5,205.5", width=1.5417]; synonyms_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8977.5 186.5 8977.5 205.5 9064.5 205.5 9064.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9021 193.5 0 71 13 -synonyms_file ", fillcolor="#94DDF4", height=0.27778, label=synonyms_file, pos="9021,196", rects="8977.5,186.5,9064.5,205.5", width=1.2083]; tumor_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4950 186.5 4950 205.5 5254 205.5 5254 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5102 193.5 0 288 55 -tumor_name: String specifying the name of the MT sample ", fillcolor="#94DDF4", height=0.27778, label="tumor_name: String specifying the name of the MT sample", pos="5102,196", rects="4950,186.5,5254,205.5", width=4.2222]; scatter_count [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9068.5 186.5 9068.5 205.5 9151.5 205.5 9151.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9110 193.5 0 67 13 -scatter_count ", fillcolor="#94DDF4", height=0.27778, label=scatter_count, pos="9110,196", rects="9068.5,186.5,9151.5,205.5", width=1.1528]; mutect_artifact_detection_mode [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2968 186.5 2968 205.5 3144 205.5 3144 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3056 193.5 0 160 30 -mutect_artifact_detection_mode ", fillcolor="#94DDF4", height=0.27778, label=mutect_artifact_detection_mode, pos="3056,196", rects="2968,186.5,3144,205.5", width=2.4444]; variants_to_table_fields [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9155.5 186.5 9155.5 205.5 9288.5 205.5 9288.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9222 193.5 0 117 24 -variants_to_table_fields ", fillcolor="#94DDF4", height=0.27778, label=variants_to_table_fields, pos="9222,196", rects="9155.5,186.5,9288.5,205.5", width=1.8472]; varscan_p_value [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9293 186.5 9293 205.5 9391 205.5 9391 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9342 193.5 0 82 15 -varscan_p_value ", fillcolor="#94DDF4", height=0.27778, label=varscan_p_value, pos="9342,196", rects="9293,186.5,9391,205.5", width=1.3611]; tumor_sample_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9395 186.5 9395 205.5 9515 205.5 9515 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9455 193.5 0 104 17 -tumor_sample_name ", fillcolor="#94DDF4", height=0.27778, label=tumor_sample_name, pos="9455,196", rects="9395,186.5,9515,205.5", width=1.6667]; omni_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3148 186.5 3148 205.5 3210 205.5 3210 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3179 193.5 0 46 8 -omni_vcf ", fillcolor="#94DDF4", height=0.27778, label=omni_vcf, pos="3179,196", rects="3148,186.5,3210,205.5", width=0.86111]; vep_ensembl_version [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9519.5 186.5 9519.5 205.5 9642.5 205.5 9642.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9581 193.5 0 107 19 -vep_ensembl_version ", fillcolor="#94DDF4", height=0.27778, label=vep_ensembl_version, pos="9581,196", rects="9519.5,186.5,9642.5,205.5", width=1.7083]; cle_vcf_filter [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9646.5 186.5 9646.5 205.5 9725.5 205.5 9725.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9686 193.5 0 63 14 -cle_vcf_filter ", fillcolor="#94DDF4", height=0.27778, label=cle_vcf_filter, pos="9686,196", rects="9646.5,186.5,9725.5,205.5", width=1.0972]; vep_ensembl_species [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9730 186.5 9730 205.5 9854 205.5 9854 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9792 193.5 0 108 19 -vep_ensembl_species ", fillcolor="#94DDF4", height=0.27778, label=vep_ensembl_species, pos="9792,196", rects="9730,186.5,9854,205.5", width=1.7222]; target_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4205.5 186.5 4205.5 205.5 4606.5 205.5 4606.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4406 193.5 0 385 81 -target_intervals: interval_list file of targets used in the sequencing experiment ", fillcolor="#94DDF4", height=0.27778, label="target_intervals: interval_list file of targets used in the sequencing experiment", pos="4406,196", rects="4205.5,186.5,4606.5,205.5", width=5.5694]; qc_minimum_mapping_quality [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3214.5 186.5 3214.5 205.5 3381.5 205.5 3381.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3298 193.5 0 151 26 -qc_minimum_mapping_quality ", fillcolor="#94DDF4", height=0.27778, label=qc_minimum_mapping_quality, pos="3298,196", rects="3214.5,186.5,3381.5,205.5", width=2.3194]; } normal_alignment_and_qc [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 2222 133.5 2222 152.5 2362 152.5 2362 133.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2292 140.5 0 124 23 -exome alignment with qc ", fillcolor="#F3CEA1", height=0.27778, label="exome alignment with qc", pos="2292,143", rects="2222,133.5,2362,152.5", width=1.9444]; normal_sequence -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 577.58 186.5 608.16 183.39 643.71 180.11 676 178 900.09 163.36 956.48 165.64 1181 161 1408.7 156.29 1974.56 167.55 \ 2216.6 153.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2216.73 155.46 2223.56 152.58 2216.42 150.57 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1201.5 163.6 0 41 8 -sequence ", label=sequence, lp="1201.5,165.5", pos="e,2225.1,152.48 577.58,186.5 608.16,183.39 643.71,180.11 676,178 900.09,163.36 956.48,165.64 1181,161 1408.7,156.29 1974.6,167.55 \ 2216.6,153.01"]; tumor_alignment_and_qc [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 3718 133.5 3718 152.5 3858 152.5 3858 133.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3788 140.5 0 124 23 -exome alignment with qc ", fillcolor="#F3CEA1", height=0.27778, label="exome alignment with qc", pos="3788,143", rects="3718,133.5,3858,152.5", width=1.9444]; bait_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 4 3973.93 186.52 3935.34 177.7 3874.88 163.87 3833.44 154.39 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3834.01 152.01 3826.64 152.84 3832.92 156.79 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3926.5 163.6 0 55 14 -bait_intervals ", label=bait_intervals, lp="3926.5,165.5", pos="e,3825.2,152.5 3973.9,186.52 3935.3,177.7 3874.9,163.87 3833.4,154.39"]; cnvkit [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 5279.5 88.5 5279.5 107.5 5326.5 107.5 5326.5 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5303 95.5 0 31 6 -cnvkit ", height=0.27778, label=cnvkit, pos="5303,98", rects="5279.5,88.5,5326.5,107.5", width=0.65278]; bait_intervals -> cnvkit [_draw_="c 7 -#000000 B 10 4092.08 186.54 4126.81 183.26 4167.86 179.86 4205 178 4344.39 171.01 4693.89 181.34 4833 170 4876.76 166.43 5172.6 \ 119.73 5271.14 104.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5271.49 106.5 5278.02 102.98 5270.72 101.66 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5107.5 141.1 0 55 14 -bait_intervals ", label=bait_intervals, lp="5107.5,143", pos="e,5279.5,102.74 4092.1,186.54 4126.8,183.26 4167.9,179.86 4205,178 4344.4,171.01 4693.9,181.34 4833,170 4876.8,166.43 5172.6,119.73 \ 5271.1,104.07"]; bait_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 3930.87 186.52 3895.94 183.2 3854.49 179.77 3817 178 3754.24 175.03 2747.86 181.02 2686 170 2674.37 167.93 2672.58 \ 163.3 2661 161 2607.4 150.37 2461.62 146.36 2370.16 144.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2370.3 142.42 2363.27 144.76 2370.23 147.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2713.5 163.6 0 55 14 -bait_intervals ", label=bait_intervals, lp="2713.5,165.5", pos="e,2361.8,144.73 3930.9,186.52 3895.9,183.2 3854.5,179.77 3817,178 3754.2,175.03 2747.9,181.02 2686,170 2674.4,167.93 2672.6,163.3 \ 2661,161 2607.4,150.37 2461.6,146.36 2370.2,144.86"]; detect_variants [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 8076.5 88.5 8076.5 107.5 8215.5 107.5 8215.5 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8146 95.5 0 123 24 -Detect Variants workflow ", fillcolor="#F3CEA1", height=0.27778, label="Detect Variants workflow", pos="8146,98", rects="8076.5,88.5,8215.5,107.5", width=1.9306]; docm_vcf -> detect_variants [_draw_="c 7 -#000000 B 13 9875.41 186.57 9869.05 183.3 9861.36 179.89 9854 178 9810.55 166.83 9486.78 180.06 9451 153 9437.1 142.49 9452.16 \ 126.17 9438 116 9413.25 98.22 8499.01 98.38 8223.68 98.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.84 96.38 8216.84 98.84 8223.84 101.28 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9470.5 141.1 0 39 8 -docm_vcf ", label=docm_vcf, lp="9470.5,143", pos="e,8215.3,98.844 9875.4,186.57 9869,183.3 9861.4,179.89 9854,178 9810.5,166.83 9486.8,180.06 9451,153 9437.1,142.49 9452.2,126.17 \ 9438,116 9413.2,98.217 8499,98.377 8223.7,98.83"]; pad_target_intervals [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 9492 133.5 9492 152.5 9800 152.5 9800 133.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9646 140.5 0 292 59 -expand interval list regions by a given number of basepairs ", height=0.27778, label="expand interval list regions by a given number of basepairs", pos="9646,143", rects="9492,133.5,9800,152.5", width=4.2778]; target_interval_padding -> pad_target_intervals [_draw_="c 7 -#000000 B 4 10082.88 186.52 9988.72 177.36 9839.09 162.79 9741.7 153.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9742.04 150.89 9734.83 152.65 9741.56 155.76 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9932.5 163.6 0 49 11 -roi_padding ", label=roi_padding, lp="9932.5,165.5", pos="e,9733.3,152.5 10083,186.52 9988.7,177.36 9839.1,162.79 9741.7,153.31"]; varscan_min_var_freq -> detect_variants [_draw_="c 7 -#000000 B 10 7357.65 186.84 7369.41 173.07 7395.34 145.48 7424 133 7483.08 107.26 7503.73 120.73 7568 116 7746.57 102.86 7956.87 \ 99.78 8068.02 99.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068 101.57 8074.99 99.08 8067.97 96.67 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7468 141.1 0 88 20 -varscan_min_var_freq ", label=varscan_min_var_freq, lp="7468,143", pos="e,8076.5,99.07 7357.6,186.84 7369.4,173.07 7395.3,145.48 7424,133 7483.1,107.26 7503.7,120.73 7568,116 7746.6,102.86 7956.9,99.777 \ 8068,99.116"]; known_variants -> detect_variants [_draw_="c 7 -#000000 B 10 7472.73 186.93 7486.32 173.29 7516.03 145.9 7547 133 7596.32 112.46 7612.78 120.73 7666 116 7807.5 103.42 7973.24 \ 100.06 8068.29 99.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.21 101.66 8075.19 99.15 8068.17 96.76 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7579 141.1 0 64 14 -known_variants ", label=known_variants, lp="7579,143", pos="e,8076.7,99.142 7472.7,186.93 7486.3,173.29 7516,145.9 7547,133 7596.3,112.46 7612.8,120.73 7666,116 7807.5,103.42 7973.2,100.06 \ 8068.3,99.212"]; varscan_min_coverage -> detect_variants [_draw_="c 7 -#000000 B 7 7585.65 186.9 7593.99 173.21 7612.89 145.74 7637 133 7674.1 113.39 7935.26 104.18 8068.38 100.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.12 103.18 8075.06 100.55 8068 98.28 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7684 141.1 0 94 20 -varscan_min_coverage ", label=varscan_min_coverage, lp="7684,143", pos="e,8076.6,100.51 7585.7,186.9 7594,173.21 7612.9,145.74 7637,133 7674.1,113.39 7935.3,104.18 8068.4,100.72"]; filter_somatic_llr_tumor_purity -> detect_variants [_draw_="c 7 -#000000 B 7 7731.55 186.77 7729.71 173.4 7728.35 147.03 7743 133 7765.95 111.02 7957.97 103.12 8068.47 100.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.48 102.84 8075.42 100.22 8068.36 97.94 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7803.5 141.1 0 121 31 -filter_somatic_llr_tumor_purity ", label=filter_somatic_llr_tumor_purity, lp="7803.5,143", pos="e,8076.9,100.18 7731.5,186.77 7729.7,173.4 7728.4,147.03 7743,133 7766,111.02 7958,103.12 8068.5,100.38"]; manta [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 6057 88.5 6057 107.5 6201 107.5 6201 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6129 95.5 0 128 24 -Set up and execute manta ", height=0.27778, label="Set up and execute manta", pos="6129,98", rects="6057,88.5,6201,107.5", width=2]; manta_output_contigs -> manta [_draw_="c 7 -#000000 B 4 6129 186.82 6129 171.17 6129 136.71 6129 115.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6131.45 115.95 6129 108.95 6126.55 115.95 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6159.5 141.1 0 61 14 -output_contigs ", label=output_contigs, lp="6159.5,143", pos="e,6129,107.44 6129,186.82 6129,171.17 6129,136.71 6129,115.91"]; bqsr_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 3719.2 186.54 3744.06 182.85 3765.85 177.56 3776 170 3779.27 167.56 3781.68 164.01 3783.44 160.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3785.73 161.2 3785.83 153.79 3781.12 159.52 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3812 163.6 0 58 14 -bqsr_intervals ", label=bqsr_intervals, lp="3812,165.5", pos="e,3786.3,152.37 3719.2,186.54 3744.1,182.85 3765.8,177.56 3776,170 3779.3,167.56 3781.7,164.01 3783.4,160.32"]; bqsr_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 3509.45 186.51 3470.24 183.24 3423.91 179.84 3382 178 3360.46 177.05 2626.42 176.92 2606 170 2599.69 167.86 2600.26 \ 163.29 2594 161 2554.37 146.54 2445.56 143.53 2369.99 143.3 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2370.39 140.85 2363.38 143.29 2370.38 145.75 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2635 163.6 0 58 14 -bqsr_intervals ", label=bqsr_intervals, lp="2635,165.5", pos="e,2361.9,143.29 3509.4,186.51 3470.2,183.24 3423.9,179.84 3382,178 3360.5,177.05 2626.4,176.92 2606,170 2599.7,167.86 2600.3,163.29 \ 2594,161 2554.4,146.54 2445.6,143.53 2370,143.3"]; normal_name -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 240.56 186.52 268.35 183.41 300.65 180.13 330 178 527.4 163.69 577.13 165.33 775 161 932.87 157.55 2024.22 162.97 \ 2216.84 152.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2216.72 155.42 2223.56 152.58 2216.43 150.53 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 798 163.6 0 46 10 -final_name ", label=final_name, lp="798,165.5", pos="e,2225.1,152.49 240.56,186.52 268.35,183.41 300.65,180.13 330,178 527.4,163.69 577.13,165.33 775,161 932.87,157.55 2024.2,162.97 \ 2216.8,152.96"]; concordance [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 5363 88.5 5363 107.5 5653 107.5 5653 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5508 95.5 0 274 49 -Concordance checking between Tumor and Normal BAM ", height=0.27778, label="Concordance checking between Tumor and Normal BAM", pos="5508,98", rects="5363,88.5,5653,107.5", width=4.0278]; reference -> concordance [_draw_="c 7 -#000000 B 7 5406.83 186.86 5419.86 174.9 5445.06 151.94 5467 133 5474.93 126.15 5483.87 118.71 5491.38 112.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5492.76 114.56 5496.63 108.23 5489.66 110.77 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5487 141.1 0 40 9 -reference ", label=reference, lp="5487,143", pos="e,5497.8,107.27 5406.8,186.86 5419.9,174.9 5445.1,151.94 5467,133 5474.9,126.15 5483.9,118.71 5491.4,112.53"]; reference -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 5333.66 186.53 5309.08 183.51 5280.77 180.3 5255 178 5128.17 166.7 5096.25 165.7 4969 161 4553.56 145.67 4055.44 \ 143.96 3866.15 143.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3866.43 141.46 3859.43 143.91 3866.43 146.36 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5176 163.6 0 40 9 -reference ", label=reference, lp="5176,165.5", pos="e,3857.9,143.91 5333.7,186.53 5309.1,183.51 5280.8,180.3 5255,178 5128.2,166.7 5096.2,165.7 4969,161 4553.6,145.67 4055.4,143.96 \ 3866.1,143.91"]; tumor_bam_to_cram [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 9350 88.5 9350 107.5 9490 107.5 9490 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9420 95.5 0 124 22 -BAM to CRAM conversion ", height=0.27778, label="BAM to CRAM conversion", pos="9420,98", rects="9350,88.5,9490,107.5", width=1.9444]; reference -> tumor_bam_to_cram [_draw_="c 7 -#000000 B 13 5456.72 186.53 5482.78 183.17 5513.86 179.7 5542 178 5680.64 169.62 7903.11 170.89 8042 170 8090.83 169.69 9765.64 \ 187.7 9800 153 9843.77 108.8 9621.56 100.35 9498.07 99.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9498.25 96.56 9491.23 98.95 9498.2 101.46 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9825 141.1 0 40 9 -reference ", label=reference, lp="9825,143", pos="e,9489.7,98.931 5456.7,186.53 5482.8,183.17 5513.9,179.7 5542,178 5680.6,169.62 7903.1,170.89 8042,170 8090.8,169.69 9765.6,187.7 \ 9800,153 9843.8,108.8 9621.6,100.35 9498.1,99.012"]; reference -> detect_variants [_draw_="c 7 -#000000 B 13 5467.18 186.52 5490.89 183.69 5517.59 180.61 5542 178 5751.1 155.67 5803.25 147.95 6013 133 6173.22 121.58 6213.44 \ 120.55 6374 116 7029.28 97.43 7821.36 98 8068.53 98.71 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.22 101.16 8075.23 98.73 8068.24 96.26 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6033 141.1 0 40 9 -reference ", label=reference, lp="6033,143", pos="e,8076.7,98.732 5467.2,186.52 5490.9,183.69 5517.6,180.61 5542,178 5751.1,155.67 5803.2,147.95 6013,133 6173.2,121.58 6213.4,120.55 \ 6374,116 7029.3,97.434 7821.4,97.997 8068.5,98.708"]; reference -> cnvkit [_draw_="c 7 -#000000 B 7 5383.73 186.56 5365.1 174.89 5332.56 152.14 5313 125 5310.9 122.08 5309.17 118.66 5307.78 115.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5310.1 114.5 5305.49 108.7 5305.48 116.11 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5357 141.1 0 40 9 -reference ", label=reference, lp="5357,143", pos="e,5305,107.27 5383.7,186.56 5365.1,174.89 5332.6,152.14 5313,125 5310.9,122.08 5309.2,118.66 5307.8,115.29"]; normal_bam_to_cram [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2068 88.5 2068 107.5 2208 107.5 2208 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2138 95.5 0 124 22 -BAM to CRAM conversion ", height=0.27778, label="BAM to CRAM conversion", pos="2138,98", rects="2068,88.5,2208,107.5", width=1.9444]; reference -> normal_bam_to_cram [_draw_="c 7 -#000000 B 16 5339.69 186.53 5313.81 183.17 5282.95 179.7 5255 178 5220.12 175.88 2772.51 179.9 2739 170 2731.91 167.9 2732.08 \ 163.14 2725 161 2696.01 152.25 2207.1 166.5 2180 153 2163.8 144.93 2152.01 127.34 2145.11 114.41 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2147.45 113.62 2142.13 108.45 2143.07 115.81 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2200 141.1 0 40 9 -reference ", label=reference, lp="2200,143", pos="e,2141.5,107.1 5339.7,186.53 5313.8,183.17 5282.9,179.7 5255,178 5220.1,175.88 2772.5,179.9 2739,170 2731.9,167.9 2732.1,163.14 \ 2725,161 2696,152.25 2207.1,166.5 2180,153 2163.8,144.93 2152,127.34 2145.1,114.41"]; reference -> manta [_draw_="c 7 -#000000 B 10 5442.03 186.54 5463.23 180.43 5487.55 170.13 5504 153 5510.52 146.21 5503.6 138.83 5511 133 5531.79 116.62 5886.72 \ 105.31 6049.09 100.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6048.7 103.43 6055.63 100.8 6048.57 98.54 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5531 141.1 0 40 9 -reference ", label=reference, lp="5531,143", pos="e,6057.1,100.76 5442,186.54 5463.2,180.43 5487.5,170.13 5504,153 5510.5,146.21 5503.6,138.83 5511,133 5531.8,116.62 5886.7,105.31 \ 6049.1,100.97"]; reference -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 5338.29 186.54 5312.7 183.26 5282.44 179.86 5255 178 5049.66 164.06 4997.73 175.54 4792 170 4682.63 167.05 4655.38 \ 163.41 4546 161 4325.29 156.13 2742.37 146.64 2370.2 144.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2370.43 142.01 2363.41 144.41 2370.4 146.91 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4812 163.6 0 40 9 -reference ", label=reference, lp="4812,165.5", pos="e,2361.9,144.41 5338.3,186.54 5312.7,183.26 5282.4,179.86 5255,178 5049.7,164.06 4997.7,175.54 4792,170 4682.6,167.05 4655.4,163.41 \ 4546,161 4325.3,156.13 2742.4,146.64 2370.2,144.45"]; somalier_vcf -> concordance [_draw_="c 7 -#000000 B 7 5579.37 186.69 5575.09 174.11 5565.71 149.9 5552 133 5545.57 125.08 5536.96 117.91 5529.05 112.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5530.48 110.22 5523.32 108.28 5527.71 114.26 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5570.5 141.1 0 13 3 -vcf ", label=vcf, lp="5570.5,143", pos="e,5522.1,107.42 5579.4,186.69 5575.1,174.11 5565.7,149.9 5552,133 5545.6,125.08 5537,117.91 5529.1,112.21"]; trimming -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 2946.78 186.57 2953.02 183.22 2960.64 179.75 2968 178 3029.19 163.47 3473.07 185.59 3534 170 3542.28 167.88 3542.78 \ 163.36 3551 161 3579.87 152.72 3652.55 148.36 3709.88 146.14 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3709.8 148.59 3716.71 145.88 3709.62 143.7 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3569.5 163.6 0 37 8 -trimming ", label=trimming, lp="3569.5,165.5", pos="e,3718.2,145.83 2946.8,186.57 2953,183.22 2960.6,179.75 2968,178 3029.2,163.47 3473.1,185.59 3534,170 3542.3,167.88 3542.8,163.36 \ 3551,161 3579.9,152.72 3652.6,148.36 3709.9,146.14"]; trimming -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 2919.22 186.58 2912.98 183.23 2905.36 179.75 2898 178 2842.22 164.71 2436.26 188.55 2382 170 2375.69 167.84 2376.06 \ 163.77 2370 161 2364.71 158.58 2359.07 156.5 2353.32 154.71 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2354.3 152.44 2346.9 152.86 2352.95 157.15 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2400.5 163.6 0 37 8 -trimming ", label=trimming, lp="2400.5,165.5", pos="e,2345.4,152.44 2919.2,186.58 2913,183.23 2905.4,179.75 2898,178 2842.2,164.71 2436.3,188.55 2382,170 2375.7,167.84 2376.1,163.77 \ 2370,161 2364.7,158.58 2359.1,156.5 2353.3,154.71"]; per_base_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 2635.09 186.5 2682.06 183.29 2737.13 179.95 2787 178 2802.6 177.39 3334.62 176.08 3349 170 3354.21 167.8 3352.82 \ 163.27 3358 161 3389.22 147.34 3594.32 144.52 3709.62 144.02 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3709.59 146.47 3716.58 143.99 3709.58 141.57 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3396.5 163.6 0 77 18 -per_base_intervals ", label=per_base_intervals, lp="3396.5,165.5", pos="e,3718.1,143.99 2635.1,186.5 2682.1,183.29 2737.1,179.95 2787,178 2802.6,177.39 3334.6,176.08 3349,170 3354.2,167.8 3352.8,163.27 \ 3358,161 3389.2,147.34 3594.3,144.52 3709.6,144.02"]; per_base_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 2391.65 186.53 2307.57 180.75 2213.25 173.52 2210 170 2207.29 167.06 2207.47 164.1 2210 161 2211.82 158.76 2215.05 \ 156.81 2219.21 155.1 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2219.72 157.52 2225.57 152.95 2218.15 152.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2248.5 163.6 0 77 18 -per_base_intervals ", label=per_base_intervals, lp="2248.5,165.5", pos="e,2227,152.47 2391.7,186.53 2307.6,180.75 2213.2,173.52 2210,170 2207.3,167.06 2207.5,164.1 2210,161 2211.8,158.76 2215.1,156.81 \ 2219.2,155.1"]; vep_to_table_fields -> detect_variants [_draw_="c 7 -#000000 B 7 7872.4 186.65 7867.38 173.58 7860.26 148.19 7873 133 7885.47 118.12 7992.21 108.43 8068.45 103.34 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.32 105.8 8075.14 102.9 8068 100.91 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7912.5 141.1 0 79 19 -vep_to_table_fields ", label=vep_to_table_fields, lp="7912.5,143", pos="e,8076.7,102.8 7872.4,186.65 7867.4,173.58 7860.3,148.19 7873,133 7885.5,118.12 7992.2,108.43 8068.4,103.34"]; per_target_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 1054.33 186.5 1103.07 183.19 1160.82 179.77 1213 178 1234.17 177.28 2718.7 178.73 2738 170 2742.88 167.79 2741.14 \ 163.23 2746 161 2789.55 141.01 3474.81 142.47 3709.7 143.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3709.68 146.01 3716.69 143.59 3709.7 141.11 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2787 163.6 0 82 20 -per_target_intervals ", label=per_target_intervals, lp="2787,165.5", pos="e,3718.2,143.6 1054.3,186.5 1103.1,183.19 1160.8,179.77 1213,178 1234.2,177.28 2718.7,178.73 2738,170 2742.9,167.79 2741.1,163.23 \ 2746,161 2789.6,141.01 3474.8,142.47 3709.7,143.56"]; per_target_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 1025.16 186.51 1109.82 178.27 1244.89 166.28 1362 161 1549.44 152.55 2015.21 165.04 2216.84 152.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2216.73 155.46 2223.56 152.57 2216.42 150.57 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1403 163.6 0 82 20 -per_target_intervals ", label=per_target_intervals, lp="1403,165.5", pos="e,2225.1,152.48 1025.2,186.51 1109.8,178.27 1244.9,166.28 1362,161 1549.4,152.55 2015.2,165.04 2216.8,152.99"]; filter_somatic_llr_normal_contamination_rate -> detect_variants [_draw_="c 7 -#000000 B 7 8018.96 186.5 7983.69 176.51 7938.09 158.06 7959 133 7973.13 116.07 8023.5 107.55 8068.4 103.27 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.45 105.73 8075.2 102.66 8068.01 100.85 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8050 141.1 0 182 44 -filter_somatic_llr_normal_contamination_rate ", label=filter_somatic_llr_normal_contamination_rate, lp="8050,143", pos="e,8076.7,102.52 8019,186.5 7983.7,176.51 7938.1,158.06 7959,133 7973.1,116.07 8023.5,107.55 8068.4,103.27"]; vep_ensembl_assembly -> detect_variants [_draw_="c 7 -#000000 B 7 8201.12 186.57 8181.87 180.55 8161.07 170.31 8149 153 8141.46 142.18 8141.29 126.98 8142.67 115.46 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8145.07 115.96 8143.76 108.66 8140.24 115.18 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8197.5 141.1 0 97 20 -vep_ensembl_assembly ", label=vep_ensembl_assembly, lp="8197.5,143", pos="e,8144,107.17 8201.1,186.57 8181.9,180.55 8161.1,170.31 8149,153 8141.5,142.18 8141.3,126.98 8142.7,115.46"]; manta_call_regions -> manta [_draw_="c 7 -#000000 B 7 6015.18 186.64 6028.77 174.42 6055.18 151.13 6079 133 6088.62 125.68 6099.71 118.06 6109 111.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6110.22 114.02 6114.73 108.13 6107.53 109.92 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6103.5 141.1 0 49 12 -call_regions ", label=call_regions, lp="6103.5,143", pos="e,6116,107.3 6015.2,186.64 6028.8,174.42 6055.2,151.13 6079,133 6088.6,125.68 6099.7,118.06 6109,111.89"]; variants_to_table_genotype_fields -> detect_variants [_draw_="c 7 -#000000 B 10 8362.44 186.55 8323.2 178.69 8270.82 166.23 8254 153 8246.03 146.73 8250.74 139.56 8243 133 8230.47 122.4 8214.43 \ 115.02 8199.01 109.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8199.88 107.63 8192.47 107.91 8198.44 112.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8323.5 141.1 0 139 33 -variants_to_table_genotype_fields ", label=variants_to_table_genotype_fields, lp="8323.5,143", pos="e,8191,107.47 8362.4,186.55 8323.2,178.69 8270.8,166.23 8254,153 8246,146.73 8250.7,139.56 8243,133 8230.5,122.4 8214.4,115.02 8199,\ 109.93"]; filter_somatic_llr_threshold -> detect_variants [_draw_="c 7 -#000000 B 10 8542.36 186.57 8490.71 174.94 8403.85 155.16 8401 153 8392.92 146.87 8398.35 138.75 8390 133 8363.68 114.87 8284.91 \ 106.32 8223.92 102.34 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8224.09 99.9 8216.95 101.91 8223.78 104.79 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8455.5 141.1 0 109 28 -filter_somatic_llr_threshold ", label=filter_somatic_llr_threshold, lp="8455.5,143", pos="e,8215.4,101.81 8542.4,186.57 8490.7,174.94 8403.9,155.16 8401,153 8392.9,146.87 8398.4,138.75 8390,133 8363.7,114.87 8284.9,106.32 \ 8223.9,102.34"]; bqsr_known_sites -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 2055.22 186.51 2118.69 183.26 2193.43 179.89 2261 178 2315.48 176.48 3188.01 177.45 3242 170 3257.06 167.92 3259.97 \ 163.27 3275 161 3356.4 148.72 3587.5 145.31 3709.83 144.36 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3709.59 146.82 3716.57 144.31 3709.56 141.92 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3311.5 163.6 0 73 16 -bqsr_known_sites ", label=bqsr_known_sites, lp="3311.5,165.5", pos="e,3718.1,144.3 2055.2,186.51 2118.7,183.26 2193.4,179.89 2261,178 2315.5,176.48 3188,177.45 3242,170 3257.1,167.92 3260,163.27 3275,\ 161 3356.4,148.72 3587.5,145.31 3709.8,144.36"]; bqsr_known_sites -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 1956.74 186.53 2003.08 179.13 2072.96 168.43 2134 161 2168.61 156.79 2179.24 156.99 2214.29 153.37 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2214.47 155.82 2221.18 152.65 2213.96 150.95 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2170.5 163.6 0 73 16 -bqsr_known_sites ", label=bqsr_known_sites, lp="2170.5,165.5", pos="e,2222.7,152.49 1956.7,186.53 2003.1,179.13 2073,168.43 2134,161 2168.6,156.79 2179.2,156.99 2214.3,153.37"]; vep_cache_dir -> detect_variants [_draw_="c 7 -#000000 B 19 8682.2 186.62 8673.93 183.44 8664.14 180.09 8655 178 8621.03 170.24 8611.21 176.63 8577 170 8550.21 164.81 8539.32 \ 170.04 8518 153 8510.08 146.67 8515.42 138.66 8507 133 8452.41 96.32 8425.46 122.38 8360 116 8314.89 111.6 8264.34 107.54 8223.7 \ 104.5 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8224.12 102.07 8216.96 104 8223.76 106.96 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8547 141.1 0 58 13 -vep_cache_dir ", label=vep_cache_dir, lp="8547,143", pos="e,8215.4,103.88 8682.2,186.62 8673.9,183.44 8664.1,180.09 8655,178 8621,170.24 8611.2,176.63 8577,170 8550.2,164.81 8539.3,170.04 \ 8518,153 8510.1,146.67 8515.4,138.66 8507,133 8452.4,96.324 8425.5,122.38 8360,116 8314.9,111.6 8264.3,107.54 8223.7,104.5"]; pindel_insert_size -> detect_variants [_draw_="c 7 -#000000 B 16 8777.01 186.55 8767.2 183.4 8755.67 180.09 8745 178 8706.89 170.54 8696.34 176.14 8658 170 8624.68 164.67 8610.93 \ 173.34 8584 153 8575.9 146.89 8581.41 138.67 8573 133 8544.8 113.99 8338.89 104.79 8223.63 101.08 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.73 98.64 8216.66 100.86 8223.58 103.53 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8620.5 141.1 0 73 18 -pindel_insert_size ", label=pindel_insert_size, lp="8620.5,143", pos="e,8215.1,100.81 8777,186.55 8767.2,183.4 8755.7,180.09 8745,178 8706.9,170.54 8696.3,176.14 8658,170 8624.7,164.67 8610.9,173.34 \ 8584,153 8575.9,146.89 8581.4,138.67 8573,133 8544.8,113.99 8338.9,104.79 8223.6,101.08"]; filter_docm_variants -> detect_variants [_draw_="c 7 -#000000 B 16 8888.4 186.5 8877.53 183.35 8864.77 180.04 8853 178 8806.89 170 8794.35 176.49 8748 170 8710.71 164.78 8695.31 \ 175.34 8665 153 8656.83 146.98 8662.39 138.71 8654 133 8619.35 109.42 8357.23 102.12 8223.69 99.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8224.03 97.47 8216.99 99.81 8223.95 102.37 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8706 141.1 0 82 20 -filter_docm_variants ", label=filter_docm_variants, lp="8706,143", pos="e,8215.5,99.784 8888.4,186.5 8877.5,183.35 8864.8,180.04 8853,178 8806.9,170 8794.4,176.49 8748,170 8710.7,164.78 8695.3,175.34 \ 8665,153 8656.8,146.98 8662.4,138.71 8654,133 8619.4,109.42 8357.2,102.12 8223.7,99.916"]; qc_minimum_base_quality -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 1506.63 186.53 1520.71 183.17 1537.57 179.7 1553 178 1721.2 159.44 2907.31 183.46 3076 170 3102 167.93 3108.02 \ 163.34 3134 161 3243.5 151.12 3561.38 146.46 3709.87 144.78 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3709.62 147.23 3716.59 144.7 3709.56 142.33 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3187.5 163.6 0 107 23 -qc_minimum_base_quality ", label=qc_minimum_base_quality, lp="3187.5,165.5", pos="e,3718.1,144.68 1506.6,186.53 1520.7,183.17 1537.6,179.7 1553,178 1721.2,159.44 2907.3,183.46 3076,170 3102,167.93 3108,163.34 3134,\ 161 3243.5,151.12 3561.4,146.46 3709.9,144.78"]; qc_minimum_base_quality -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 1507.8 186.53 1521.65 183.3 1538.02 179.93 1553 178 1643.22 166.38 1871.09 164.31 1962 161 2073.09 156.96 2103.1 \ 161.44 2216 153.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2215.97 155.57 2222.77 152.6 2215.6 150.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2015.5 163.6 0 107 23 -qc_minimum_base_quality ", label=qc_minimum_base_quality, lp="2015.5,165.5", pos="e,2224.3,152.48 1507.8,186.53 1521.7,183.3 1538,179.93 1553,178 1643.2,166.38 1871.1,164.31 1962,161 2073.1,156.96 2103.1,161.44 \ 2216,153.11"]; vep_pick -> detect_variants [_draw_="c 7 -#000000 B 10 6238.82 186.65 6260.27 173.1 6305.22 146.48 6347 133 6394.92 117.54 6408.81 120.04 6459 116 6620.16 103.02 7758.36 \ 99.78 8068.26 99.14 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.24 101.59 8075.23 99.13 8068.23 96.69 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6365 141.1 0 36 8 -vep_pick ", label=vep_pick, lp="6365,143", pos="e,8076.7,99.122 6238.8,186.65 6260.3,173.1 6305.2,146.48 6347,133 6394.9,117.54 6408.8,120.04 6459,116 6620.2,103.02 7758.4,99.784 \ 8068.3,99.14"]; strelka_cpu_reserved -> detect_variants [_draw_="c 7 -#000000 B 10 6331.26 186.61 6350.54 172.74 6391.61 145.34 6431 133 6504.72 109.9 6526.86 120.21 6604 116 6893.56 100.21 7797.25 \ 98.97 8068.35 98.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.06 101.41 8075.06 98.96 8068.06 96.51 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6474.5 141.1 0 87 20 -strelka_cpu_reserved ", label=strelka_cpu_reserved, lp="6474.5,143", pos="e,8076.6,98.962 6331.3,186.61 6350.5,172.74 6391.6,145.34 6431,133 6504.7,109.9 6526.9,120.21 6604,116 6893.6,100.21 7797.3,98.969 \ 8068.4,98.962"]; manta_non_wgs -> manta [_draw_="c 7 -#000000 B 7 5672.52 186.72 5670.12 170.34 5667.53 133.85 5688 116 5701.36 104.36 5925.71 100.66 6049.13 99.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6048.98 101.96 6055.96 99.45 6048.94 97.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5694.5 141.1 0 37 7 -non_wgs ", label=non_wgs, lp="5694.5,143", pos="e,6057.5,99.435 5672.5,186.72 5670.1,170.34 5667.5,133.85 5688,116 5701.4,104.36 5925.7,100.66 6049.1,99.511"]; varscan_strand_filter -> detect_variants [_draw_="c 7 -#000000 B 10 6457.19 186.62 6479.72 172.76 6527.52 145.39 6572 133 6651.12 110.97 6673.99 120.28 6756 116 7014.41 102.5 7815.22 \ 99.69 8068.42 99.13 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.33 101.58 8075.32 99.12 8068.32 96.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6614.5 141.1 0 85 21 -varscan_strand_filter ", label=varscan_strand_filter, lp="6614.5,143", pos="e,8076.8,99.113 6457.2,186.62 6479.7,172.76 6527.5,145.39 6572,133 6651.1,110.97 6674,120.28 6756,116 7014.4,102.5 7815.2,99.69 \ 8068.4,99.132"]; tumor_sequence -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 4698.44 186.54 4669.65 183.62 4636.88 180.47 4607 178 4492.92 168.56 4464.34 166.51 4350 161 4177.29 152.68 3974.52 \ 147.73 3865.97 145.48 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3866.25 143.03 3859.2 145.34 3866.15 147.93 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4524.5 163.6 0 41 8 -sequence ", label=sequence, lp="4524.5,165.5", pos="e,3857.7,145.31 4698.4,186.54 4669.7,183.62 4636.9,180.47 4607,178 4492.9,168.56 4464.3,166.51 4350,161 4177.3,152.68 3974.5,147.73 \ 3866,145.48"]; picard_metric_accumulation_level -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 1344.03 186.54 1361.39 183.18 1382.12 179.71 1401 178 1559.02 163.67 2670.49 177.04 2829 170 2877.12 167.86 2888.9 \ 163.48 2937 161 3221.43 146.32 3559.93 144.11 3709.87 143.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3709.66 146.36 3716.66 143.9 3709.66 141.46 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3006 163.6 0 138 32 -picard_metric_accumulation_level ", label=picard_metric_accumulation_level, lp="3006,165.5", pos="e,3718.2,143.9 1344,186.54 1361.4,183.18 1382.1,179.71 1401,178 1559,163.67 2670.5,177.04 2829,170 2877.1,167.86 2888.9,163.48 2937,\ 161 3221.4,146.32 3559.9,144.11 3709.9,143.91"]; picard_metric_accumulation_level -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 1346.35 186.57 1390.21 178.1 1461.65 165.65 1524 161 1675.25 149.72 2051.34 162.77 2216.87 152.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2216.73 155.45 2223.56 152.57 2216.42 150.56 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1593 163.6 0 138 32 -picard_metric_accumulation_level ", label=picard_metric_accumulation_level, lp="1593,165.5", pos="e,2225.1,152.47 1346.3,186.57 1390.2,178.1 1461.6,165.65 1524,161 1675.3,149.72 2051.3,162.77 2216.9,152.99"]; annotate_coding_only -> detect_variants [_draw_="c 7 -#000000 B 10 6585.54 186.59 6612.04 172.71 6668.07 145.29 6719 133 6811.75 110.62 6837.69 120.45 6933 116 7155.23 105.63 7836.77 \ 100.8 8068.18 99.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.05 101.88 8075.04 99.39 8068.02 96.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6764.5 141.1 0 91 20 -annotate_coding_only ", label=annotate_coding_only, lp="6764.5,143", pos="e,8076.6,99.376 6585.5,186.59 6612,172.71 6668.1,145.29 6719,133 6811.7,110.62 6837.7,120.45 6933,116 7155.2,105.63 7836.8,100.8 \ 8068.2,99.426"]; normal_sample_name -> detect_variants [_draw_="c 7 -#000000 B 10 6719.14 186.5 6753.07 172.61 6824.1 145.34 6887 133 6994.54 111.9 7023.51 120.7 7133 116 7481.65 101.04 7898.33 \ 99.06 8068.18 98.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.06 101.37 8075.06 98.92 8068.06 96.47 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6932 141.1 0 90 18 -normal_sample_name ", label=normal_sample_name, lp="6932,143", pos="e,8076.6,98.917 6719.1,186.5 6753.1,172.61 6824.1,145.34 6887,133 6994.5,111.9 7023.5,120.7 7133,116 7481.7,101.04 7898.3,99.056 \ 8068.2,98.922"]; vep_custom_annotations -> detect_variants [_draw_="c 7 -#000000 B 7 6860.27 186.55 6902.8 172.72 6991.63 145.55 7069 133 7261.47 101.78 7854.65 98.86 8068.3 98.85 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.14 101.3 8075.14 98.85 8068.14 96.4 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7120.5 141.1 0 103 22 -vep_custom_annotations ", label=vep_custom_annotations, lp="7120.5,143", pos="e,8076.7,98.853 6860.3,186.55 6902.8,172.72 6991.6,145.55 7069,133 7261.5,101.78 7854.6,98.858 8068.3,98.852"]; varscan_max_normal_freq -> detect_variants [_draw_="c 7 -#000000 B 10 7017.25 186.58 7073.53 173.42 7187.33 147.91 7285 133 7355.26 122.27 7373.08 120.64 7444 116 7670.47 101.18 7938.79 \ 98.92 8068.34 98.8 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.15 101.25 8075.15 98.79 8068.15 96.35 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7338 141.1 0 106 23 -varscan_max_normal_freq ", label=varscan_max_normal_freq, lp="7338,143", pos="e,8076.7,98.79 7017.2,186.58 7073.5,173.42 7187.3,147.91 7285,133 7355.3,122.27 7373.1,120.64 7444,116 7670.5,101.18 7938.8,98.922 \ 8068.3,98.796"]; summary_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 2866.21 186.58 2877.02 183.23 2890 179.76 2902 178 2960.71 169.39 3378.08 182.89 3436 170 3445.51 167.88 3446.53 \ 163.29 3456 161 3502.31 149.81 3626.95 145.99 3709.64 144.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3709.53 147.13 3716.49 144.57 3709.45 142.23 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3494.5 163.6 0 77 17 -summary_intervals ", label=summary_intervals, lp="3494.5,165.5", pos="e,3718,144.55 2866.2,186.58 2877,183.23 2890,179.76 2902,178 2960.7,169.39 3378.1,182.89 3436,170 3445.5,167.88 3446.5,163.29 3456,\ 161 3502.3,149.81 3626.9,145.99 3709.6,144.68"]; summary_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 2817.92 186.5 2807.35 183.18 2794.7 179.75 2783 178 2769.62 176 2306.2 178.89 2296 170 2293.25 167.6 2291.83 164.17 \ 2291.17 160.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2293.63 160.72 2290.84 153.85 2288.74 160.96 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2334.5 163.6 0 77 17 -summary_intervals ", label=summary_intervals, lp="2334.5,165.5", pos="e,2290.8,152.34 2817.9,186.5 2807.3,183.18 2794.7,179.75 2783,178 2769.6,176 2306.2,178.89 2296,170 2293.3,167.6 2291.8,164.17 2291.2,\ 160.58"]; synonyms_file -> detect_variants [_draw_="c 7 -#000000 B 16 9001.71 186.56 8993.35 183.29 8983.36 179.88 8974 178 8904.2 163.96 8884.23 181.71 8814 170 8787.08 165.51 8776.32 \ 170.04 8755 153 8747.08 146.67 8752.4 138.69 8744 133 8701.96 104.53 8376 99.71 8223.81 99.03 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.89 96.58 8216.88 99 8223.87 101.48 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8784 141.1 0 58 13 -synonyms_file ", label=synonyms_file, lp="8784,143", pos="e,8215.4,98.992 9001.7,186.56 8993.4,183.29 8983.4,179.88 8974,178 8904.2,163.96 8884.2,181.71 8814,170 8787.1,165.51 8776.3,170.04 \ 8755,153 8747.1,146.67 8752.4,138.69 8744,133 8702,104.53 8376,99.711 8223.8,99.026"]; tumor_name -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 5048.83 186.53 4994.69 178.33 4908.24 166.35 4833 161 4645.34 147.65 4075.98 144.77 3866.47 144.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3866.49 141.71 3859.48 144.14 3866.47 146.61 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4945 163.6 0 46 10 -final_name ", label=final_name, lp="4945,165.5", pos="e,3858,144.14 5048.8,186.53 4994.7,178.33 4908.2,166.35 4833,161 4645.3,147.65 4076,144.77 3866.5,144.16"]; scatter_count -> detect_variants [_draw_="c 7 -#000000 B 19 9091.57 186.52 9083.57 183.24 9074 179.84 9065 178 8983.5 161.31 8960.04 183.77 8878 170 8851.93 165.62 8841.57 \ 169.6 8821 153 8813.1 146.63 8818.31 138.82 8810 133 8769.47 104.63 8749.26 120.54 8700 116 8530.5 100.36 8330.73 98.22 8223.46 \ 98.39 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.77 95.94 8216.77 98.4 8223.78 100.84 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8849 141.1 0 56 13 -scatter_count ", label=scatter_count, lp="8849,143", pos="e,8215.3,98.404 9091.6,186.52 9083.6,183.24 9074,179.84 9065,178 8983.5,161.31 8960,183.77 8878,170 8851.9,165.62 8841.6,169.6 8821,\ 153 8813.1,146.63 8818.3,138.82 8810,133 8769.5,104.63 8749.3,120.54 8700,116 8530.5,100.36 8330.7,98.218 8223.5,98.387"]; variants_to_table_fields -> detect_variants [_draw_="c 7 -#000000 B 19 9192.61 186.54 9180.19 183.31 9165.49 179.94 9152 178 9077.57 167.3 9057.74 178.22 8983 170 8939.06 165.17 8920.98 \ 178.68 8885 153 8876.74 147.11 8882.36 138.75 8874 133 8828.54 101.72 8806 120.56 8751 116 8562 100.33 8338.79 98.31 8223.54 98.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.6 96.02 8216.61 98.49 8223.61 100.92 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8933.5 141.1 0 97 24 -variants_to_table_fields ", label=variants_to_table_fields, lp="8933.5,143", pos="e,8215.1,98.491 9192.6,186.54 9180.2,183.31 9165.5,179.94 9152,178 9077.6,167.3 9057.7,178.22 8983,170 8939.1,165.17 8921,178.68 \ 8885,153 8876.7,147.11 8882.4,138.75 8874,133 8828.5,101.72 8806,120.56 8751,116 8562,100.33 8338.8,98.306 8223.5,98.475"]; varscan_p_value -> detect_variants [_draw_="c 7 -#000000 B 16 9320.42 186.59 9310.93 183.28 9299.57 179.84 9289 178 9188.24 160.44 9160.31 184.09 9059 170 9027.72 165.65 9015.05 \ 172.23 8990 153 8981.95 146.82 8987.46 138.59 8979 133 8947.82 112.4 8424.77 102.91 8223.79 100.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.88 97.56 8216.85 99.91 8223.81 102.46 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9024 141.1 0 68 15 -varscan_p_value ", label=varscan_p_value, lp="9024,143", pos="e,8215.3,99.89 9320.4,186.59 9310.9,183.28 9299.6,179.84 9289,178 9188.2,160.44 9160.3,184.09 9059,170 9027.7,165.65 9015.1,172.23 \ 8990,153 8982,146.82 8987.5,138.59 8979,133 8947.8,112.4 8424.8,102.91 8223.8,100.01"]; tumor_sample_name -> detect_variants [_draw_="c 7 -#000000 B 16 9428.5 186.52 9417.09 183.24 9403.51 179.85 9391 178 9285.86 162.48 9257.59 182.12 9152 170 9113.29 165.56 9097.45 \ 176 9066 153 9057.81 147.01 9063.47 138.58 9055 133 9020.57 110.33 8437.4 102.02 8223.69 99.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.86 97.28 8216.84 99.66 8223.81 102.18 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9108.5 141.1 0 85 17 -tumor_sample_name ", label=tumor_sample_name, lp="9108.5,143", pos="e,8215.3,99.64 9428.5,186.52 9417.1,183.24 9403.5,179.85 9391,178 9285.9,162.48 9257.6,182.12 9152,170 9113.3,165.56 9097.4,176 \ 9066,153 9057.8,147.01 9063.5,138.58 9055,133 9020.6,110.33 8437.4,102.02 8223.7,99.729"]; omni_vcf -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 3192.78 186.6 3199.03 183.25 3206.65 179.77 3214 178 3254.51 168.23 3549.14 182.17 3589 170 3596.07 167.84 3596.01 \ 163.41 3603 161 3622.47 154.3 3668.55 150.05 3709.85 147.48 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3709.96 149.93 3716.8 147.06 3709.66 145.04 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3621.5 163.6 0 37 8 -omni_vcf ", label=omni_vcf, lp="3621.5,165.5", pos="e,3718.3,146.97 3192.8,186.6 3199,183.25 3206.6,179.77 3214,178 3254.5,168.23 3549.1,182.17 3589,170 3596.1,167.84 3596,163.41 3603,\ 161 3622.5,154.3 3668.6,150.05 3709.8,147.48"]; omni_vcf -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 3165.23 186.56 3158.98 183.21 3151.36 179.74 3144 178 3105.28 168.87 2465.67 182.79 2428 170 2421.69 167.86 2422.17 \ 163.53 2416 161 2401.62 155.09 2385.6 151.16 2369.97 148.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2370.63 146.18 2363.34 147.54 2369.89 151.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2446.5 163.6 0 37 8 -omni_vcf ", label=omni_vcf, lp="2446.5,165.5", pos="e,2361.8,147.32 3165.2,186.56 3159,183.21 3151.4,179.74 3144,178 3105.3,168.87 2465.7,182.79 2428,170 2421.7,167.86 2422.2,163.53 \ 2416,161 2401.6,155.09 2385.6,151.16 2370,148.56"]; vep_ensembl_version -> detect_variants [_draw_="c 7 -#000000 B 19 9554.08 186.5 9542.49 183.22 9528.7 179.83 9516 178 9398.05 161.04 9366.45 183 9248 170 9207.97 165.61 9191.58 \ 176.67 9159 153 9150.79 147.04 9156.49 138.55 9148 133 9077.78 87.09 9043.77 120.66 8960 116 8689.99 100.99 8368.94 98.92 8223.93 \ 98.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.99 96.38 8216.99 98.83 8223.99 101.28 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9203 141.1 0 88 19 -vep_ensembl_version ", label=vep_ensembl_version, lp="9203,143", pos="e,8215.5,98.83 9554.1,186.5 9542.5,183.22 9528.7,179.83 9516,178 9398,161.04 9366.5,183 9248,170 9208,165.61 9191.6,176.67 9159,\ 153 9150.8,147.04 9156.5,138.55 9148,133 9077.8,87.088 9043.8,120.66 8960,116 8690,100.99 8368.9,98.921 8223.9,98.833"]; cle_vcf_filter -> detect_variants [_draw_="c 7 -#000000 B 16 9668.86 186.6 9661.15 183.25 9651.81 179.77 9643 178 9622.08 173.79 9276.57 182.11 9259 170 9244.39 159.93 9258.27 \ 143.55 9244 133 9174.76 81.8 9136.99 120.59 9051 116 8744.98 99.67 8380.04 98.35 8223.52 98.65 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.82 96.2 8216.83 98.67 8223.84 101.1 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9276.5 141.1 0 51 14 -cle_vcf_filter ", label=cle_vcf_filter, lp="9276.5,143", pos="e,8215.3,98.672 9668.9,186.6 9661.1,183.25 9651.8,179.77 9643,178 9622.1,173.79 9276.6,182.11 9259,170 9244.4,159.93 9258.3,143.55 \ 9244,133 9174.8,81.8 9137,120.59 9051,116 8745,99.668 8380,98.353 8223.5,98.654"]; vep_ensembl_species -> detect_variants [_draw_="c 7 -#000000 B 19 9764.65 186.58 9752.87 183.32 9738.87 179.91 9726 178 9642.83 165.67 9620.93 174.96 9537 170 9487.17 167.06 9354.44 \ 180.83 9313 153 9304.75 147.46 9311.16 138.67 9303 133 9244.62 92.47 9214.93 120.39 9144 116 8965.5 104.96 8426.04 100.67 8223.74 \ 99.42 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.77 96.97 8216.75 99.38 8223.74 101.87 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9358 141.1 0 90 19 -vep_ensembl_species ", label=vep_ensembl_species, lp="9358,143", pos="e,8215.2,99.372 9764.6,186.58 9752.9,183.32 9738.9,179.91 9726,178 9642.8,165.67 9620.9,174.96 9537,170 9487.2,167.06 9354.4,180.83 \ 9313,153 9304.8,147.46 9311.2,138.67 9303,133 9244.6,92.471 9214.9,120.39 9144,116 8965.5,104.96 8426,100.67 8223.7,99.424"]; target_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 4369.7 186.51 4333.51 178.43 4276.25 166.69 4226 161 4100.55 146.8 3953.76 143.86 3865.96 143.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3866.17 141.11 3859.16 143.54 3866.16 146.01 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4317 163.6 0 64 16 -target_intervals ", label=target_intervals, lp="4317,165.5", pos="e,3857.7,143.54 4369.7,186.51 4333.5,178.43 4276.2,166.69 4226,161 4100.6,146.8 3953.8,143.86 3866,143.56"]; target_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 4318.38 186.53 4227.59 178.19 4081.52 166 3955 161 3640.39 148.58 2654.81 144.98 2369.87 144.19 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2370.17 141.74 2363.16 144.17 2370.15 146.64 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4135 163.6 0 64 16 -target_intervals ", label=target_intervals, lp="4135,165.5", pos="e,2361.6,144.17 4318.4,186.53 4227.6,178.19 4081.5,166 3955,161 3640.4,148.58 2654.8,144.98 2369.9,144.19"]; target_intervals -> pad_target_intervals [_draw_="c 7 -#000000 B 10 4490.19 186.54 4527.2 183.2 4571.22 179.75 4611 178 4881.69 166.1 9217.18 161.4 9488 153 9490.1 152.93 9492.22 \ 152.87 9494.35 152.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9494.21 155.25 9501.12 152.55 9494.03 150.35 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8017.5 163.6 0 47 13 -interval_list ", label=interval_list, lp="8017.5,165.5", pos="e,9502.6,152.49 4490.2,186.54 4527.2,183.2 4571.2,179.75 4611,178 4881.7,166.1 9217.2,161.4 9488,153 9490.1,152.93 9492.2,152.87 \ 9494.4,152.79"]; qc_minimum_mapping_quality -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 3334.62 186.57 3350.35 183.3 3368.99 179.9 3386 178 3414.17 174.86 3614.46 179.95 3641 170 3646.92 167.78 3646.19 \ 163.49 3652 161 3669.99 153.29 3690.46 148.78 3709.95 146.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3710.08 148.66 3716.74 145.4 3709.5 143.79 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3713.5 163.6 0 123 26 -qc_minimum_mapping_quality ", label=qc_minimum_mapping_quality, lp="3713.5,165.5", pos="e,3718.2,145.22 3334.6,186.57 3350.3,183.3 3369,179.9 3386,178 3414.2,174.86 3614.5,179.95 3641,170 3646.9,167.78 3646.2,163.49 \ 3652,161 3670,153.29 3690.5,148.78 3710,146.21"]; qc_minimum_mapping_quality -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 3262.66 186.58 3246.94 183.23 3228.15 179.75 3211 178 3170.27 173.83 2512.77 183.16 2474 170 2467.69 167.86 2468.21 \ 163.42 2462 161 2445.3 154.49 2406.48 150.34 2370.14 147.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2370.61 145.35 2363.46 147.32 2370.28 150.23 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2535.5 163.6 0 123 26 -qc_minimum_mapping_quality ", label=qc_minimum_mapping_quality, lp="2535.5,165.5", pos="e,2362,147.21 3262.7,186.58 3246.9,183.23 3228.1,179.75 3211,178 3170.3,173.83 2512.8,183.16 2474,170 2467.7,167.86 2468.2,163.42 \ 2462,161 2445.3,154.49 2406.5,150.34 2370.1,147.77"]; normal_index_cram [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 609.5 35.5 609.5 54.5 728.5 54.5 728.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 669 42.5 0 103 19 -samtools index cram ", height=0.27778, label="samtools index cram", pos="669,45", rects="609.5,35.5,728.5,54.5", width=1.6528]; normal_index_cram -> normal_cram [_draw_="c 7 -#000000 B 10 685.08 54.42 698.66 61.8 718.91 71.47 738 75.5 794.78 87.49 2771.44 92.25 2827 75.5 2837.75 72.26 2848.3 65.59 \ 2856.58 59.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2857.83 61.45 2861.77 55.17 2854.77 57.63 ", pos="e,2862.9,54.224 685.08,54.418 698.66,61.797 718.91,71.468 738,75.5 794.78,87.489 2771.4,92.246 2827,75.5 2837.8,72.26 2848.3,65.595 \ 2856.6,59.319"]; concordance -> somalier_concordance_statistics [_draw_="c 7 -#000000 B 7 5652.75 96.66 5809.15 94.9 6065.48 87.96 6285 63 6299.57 61.34 6315.31 58.74 6329.57 56.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6329.88 58.5 6336.3 54.77 6328.96 53.69 ", pos="e,6337.8,54.489 5652.7,96.665 5809.2,94.905 6065.5,87.962 6285,63 6299.6,61.343 6315.3,58.741 6329.6,56.066"]; concordance -> somalier_concordance_metrics [_draw_="c 7 -#000000 B 10 5594.6 88.51 5657.39 82.67 5744.37 75.23 5821 71 5950.63 63.85 5983.95 77.14 6113 63 6127.22 61.44 6142.58 58.81 \ 6156.43 56.08 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6156.53 58.56 6162.9 54.76 6155.55 53.75 ", pos="e,6164.4,54.462 5594.6,88.507 5657.4,82.667 5744.4,75.229 5821,71 5950.6,63.846 5983.9,77.137 6113,63 6127.2,61.442 6142.6,58.81 \ 6156.4,56.076"]; tumor_alignment_and_qc -> tumor_per_target_hs_metrics [_draw_="c 7 -#000000 B 4 3747.05 133.56 3661.36 115.91 3463.42 75.13 3371.09 56.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3371.85 53.77 3364.5 54.76 3370.86 58.57 ", pos="e,3363,54.45 3747.1,133.56 3661.4,115.91 3463.4,75.133 3371.1,56.112"]; tumor_alignment_and_qc -> tumor_mark_duplicates_metrics [_draw_="c 7 -#000000 B 4 3762.08 133.56 3708.64 116.17 3586.23 76.34 3526.72 56.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3527.61 54.69 3520.2 54.85 3526.09 59.35 ", pos="e,3518.8,54.382 3762.1,133.56 3708.6,116.17 3586.2,76.34 3526.7,56.974"]; tumor_alignment_and_qc -> tumor_per_target_coverage_metrics [_draw_="c 7 -#000000 B 4 3778.88 133.82 3760.57 117.39 3719.17 80.25 3696.52 59.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3698.38 58.3 3691.53 55.45 3695.11 61.95 ", pos="e,3690.4,54.438 3778.9,133.82 3760.6,117.39 3719.2,80.25 3696.5,59.928"]; tumor_alignment_and_qc -> tumor_summary_hs_metrics [_draw_="c 7 -#000000 B 7 3787.15 133.52 3786.16 119.06 3786.27 89.38 3801 71 3805.35 65.57 3811.1 61.3 3817.29 57.95 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3818.08 60.29 3823.36 55.07 3815.98 55.86 ", pos="e,3824.7,54.426 3787.1,133.52 3786.2,119.06 3786.3,89.384 3801,71 3805.4,65.571 3811.1,61.303 3817.3,57.953"]; tumor_alignment_and_qc -> tumor_verify_bam_id_depth [_draw_="c 7 -#000000 B 4 3808.1 133.65 3849.39 116.49 3943.88 77.22 3991.09 57.6 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3991.86 59.93 3997.39 54.98 3989.98 55.41 ", pos="e,3998.8,54.4 3808.1,133.65 3849.4,116.49 3943.9,77.218 3991.1,57.6"]; tumor_alignment_and_qc -> tumor_insert_size_metrics [_draw_="c 7 -#000000 B 13 3816.59 133.52 3838.86 126.83 3870.49 117.14 3898 108 3944.56 92.53 3954.05 81.39 4002 71 4042.98 62.12 4054.55 \ 69.31 4096 63 4107.54 61.24 4119.94 58.77 4131.35 56.25 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4131.68 58.69 4137.97 54.75 4130.6 53.91 ", pos="e,4139.4,54.42 3816.6,133.52 3838.9,126.83 3870.5,117.14 3898,108 3944.6,92.53 3954.1,81.388 4002,71 4043,62.122 4054.5,69.311 4096,\ 63 4107.5,61.242 4119.9,58.769 4131.3,56.251"]; tumor_alignment_and_qc -> tumor_per_base_coverage_metrics [_draw_="c 7 -#000000 B 13 3824.89 133.53 3836.74 130.81 3849.92 127.78 3862 125 3966.01 101.05 3990.31 85.9 4096 71 4162.11 61.68 4179.66 \ 70.5 4246 63 4261.49 61.25 4278.24 58.62 4293.44 55.95 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4293.76 58.38 4300.22 54.73 4292.9 53.56 ", pos="e,4301.7,54.465 3824.9,133.53 3836.7,130.81 3849.9,127.78 3862,125 3966,101.05 3990.3,85.898 4096,71 4162.1,61.681 4179.7,70.496 \ 4246,63 4261.5,61.25 4278.2,58.619 4293.4,55.948"]; tumor_alignment_and_qc -> tumor_alignment_summary_metrics [_draw_="c 7 -#000000 B 7 3857.86 140.48 3919.81 138.57 4012.66 134.32 4093 125 4239.69 107.98 4411.18 73.42 4492.14 56.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4492.34 58.67 4498.67 54.82 4491.32 53.88 ", pos="e,4500.2,54.499 3857.9,140.48 3919.8,138.57 4012.7,134.32 4093,125 4239.7,107.98 4411.2,73.418 4492.1,56.209"]; tumor_alignment_and_qc -> tumor_hs_metrics [_draw_="c 7 -#000000 B 10 3857.85 139.87 3927.03 137.44 4035.95 132.77 4130 125 4246.02 115.42 4593.81 71.98 4636 63 4643.66 61.37 4651.79 \ 59.18 4659.41 56.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4660.01 59.29 4665.98 54.89 4658.57 54.61 ", pos="e,4667.4,54.448 3857.8,139.87 3927,137.44 4035.9,132.77 4130,125 4246,115.42 4593.8,71.979 4636,63 4643.7,61.369 4651.8,59.178 4659.4,\ 56.913"]; tumor_alignment_and_qc -> tumor_flagstats [_draw_="c 7 -#000000 B 10 3718.04 138.25 3657.03 134.93 3566.15 129.87 3487 125 3195.58 107.06 3118.12 125.87 2833 63 2826.06 61.47 2818.73 \ 59.34 2811.86 57.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2812.91 54.88 2805.49 54.96 2811.34 59.52 ", pos="e,2804.1,54.476 3718,138.25 3657,134.93 3566.1,129.87 3487,125 3195.6,107.06 3118.1,125.87 2833,63 2826.1,61.469 2818.7,59.343 2811.9,\ 57.113"]; tumor_alignment_and_qc -> tumor_per_base_hs_metrics [_draw_="c 7 -#000000 B 10 3718.35 136.07 3680.41 132.82 3632.62 128.72 3590 125 3360.77 105.01 3302.67 102.58 3076 63 3064.61 61.01 3052.38 \ 58.59 3040.96 56.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3041.64 53.85 3034.29 54.8 3040.63 58.65 ", pos="e,3032.8,54.491 3718.4,136.07 3680.4,132.82 3632.6,128.72 3590,125 3360.8,105.01 3302.7,102.58 3076,63 3064.6,61.011 3052.4,58.593 \ 3041,56.212"]; tumor_alignment_and_qc -> tumor_verify_bam_id_metrics [_draw_="c 7 -#000000 B 7 3719.25 133.51 3615.51 120.37 3412.91 93.43 3242 63 3230.2 60.9 3217.52 58.46 3205.65 56.1 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3206.4 53.75 3199.06 54.78 3205.44 58.56 ", pos="e,3197.6,54.479 3719.2,133.51 3615.5,120.37 3412.9,93.429 3242,63 3230.2,60.9 3217.5,58.461 3205.6,56.098"]; tumor_alignment_and_qc -> concordance [_draw_="c 7 -#000000 B 10 3857.71 141.34 4027.15 139.65 4474.08 134.57 4847 125 5061.28 119.5 5114.84 117.16 5329 108 5337.48 107.64 5346.19 \ 107.25 5354.97 106.85 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5355.03 109.3 5361.91 106.53 5354.8 104.4 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5150 118.6 0 28 5 -bam_1 ", label=bam_1, lp="5150,120.5", pos="e,5363.4,106.46 3857.7,141.34 4027.1,139.65 4474.1,134.57 4847,125 5061.3,119.5 5114.8,117.16 5329,108 5337.5,107.64 5346.2,107.25 \ 5355,106.85"]; tumor_alignment_and_qc -> tumor_bam_to_cram [_draw_="c 7 -#000000 B 10 3857.81 141.28 4032.85 139.51 4504.63 134.94 4898 133 4905.84 132.96 9405.7 129.66 9412 125 9415.16 122.66 9417.11 \ 119.09 9418.31 115.34 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9420.66 116.08 9419.6 108.74 9415.85 115.14 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9427.5 118.6 0 19 3 -bam ", label=bam, lp="9427.5,120.5", pos="e,9419.9,107.25 3857.8,141.28 4032.9,139.51 4504.6,134.94 4898,133 4905.8,132.96 9405.7,129.66 9412,125 9415.2,122.66 9417.1,119.09 \ 9418.3,115.34"]; tumor_alignment_and_qc -> detect_variants [_draw_="c 7 -#000000 B 10 3857.94 141.43 4212.49 138.52 5794.82 125.54 5801 125 5825.24 122.89 5830.76 118.1 5855 116 5967.39 106.28 7680.14 \ 100.44 8068.22 99.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.09 101.68 8075.08 99.21 8068.07 96.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5878 118.6 0 46 9 -tumor_bam ", label=tumor_bam, lp="5878,120.5", pos="e,8076.6,99.206 3857.9,141.43 4212.5,138.52 5794.8,125.54 5801,125 5825.2,122.89 5830.8,118.1 5855,116 5967.4,106.28 7680.1,100.44 \ 8068.2,99.232"]; tumor_alignment_and_qc -> cnvkit [_draw_="c 7 -#000000 B 10 3857.85 142.49 4007.57 143.15 4370.47 142.57 4674 125 4715.46 122.6 4725.56 118.66 4767 116 4958.17 103.73 5188.28 \ 100.2 5271.25 99.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5271.24 101.74 5278.21 99.22 5271.19 96.84 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4790 118.6 0 46 9 -tumor_bam ", label=tumor_bam, lp="4790,120.5", pos="e,5279.7,99.2 3857.8,142.49 4007.6,143.15 4370.5,142.57 4674,125 4715.5,122.6 4725.6,118.66 4767,116 4958.2,103.73 5188.3,100.2 \ 5271.3,99.29"]; tumor_alignment_and_qc -> manta [_draw_="c 7 -#000000 B 10 3857.94 141.41 4154.63 138.91 5297.48 129.03 5374 125 5416.35 122.77 5426.67 118.55 5469 116 5579.4 109.36 5898.39 \ 103.07 6048.77 100.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6048.64 102.83 6055.6 100.25 6048.56 97.93 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5492 118.6 0 46 9 -tumor_bam ", label=tumor_bam, lp="5492,120.5", pos="e,6057.1,100.23 3857.9,141.41 4154.6,138.91 5297.5,129.03 5374,125 5416.4,122.77 5426.7,118.55 5469,116 5579.4,109.36 5898.4,103.07 \ 6048.8,100.38"]; tumor_index_cram [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 9279.5 35.5 9279.5 54.5 9398.5 54.5 9398.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9339 42.5 0 103 19 -samtools index cram ", height=0.27778, label="samtools index cram", pos="9339,45", rects="9279.5,35.5,9398.5,54.5", width=1.6528]; tumor_bam_to_cram -> tumor_index_cram [_draw_="c 7 -#000000 B 4 9406.62 88.58 9393.73 80.46 9374.04 68.06 9359.22 58.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9360.91 56.9 9353.68 55.24 9358.29 61.04 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9401.5 73.6 0 21 4 -cram ", label=cram, lp="9401.5,75.5", pos="e,9352.4,54.434 9406.6,88.578 9393.7,80.458 9374,68.061 9359.2,58.734"]; detect_variants -> pindel_unfiltered_vcf [_draw_="c 7 -#000000 B 4 8146 88.58 8146 81.52 8146 71.24 8146 62.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8148.45 62.78 8146 55.78 8143.55 62.78 ", pos="e,8146,54.265 8146,88.578 8146,81.523 8146,71.24 8146,62.547"]; detect_variants -> varscan_filtered_vcf [_draw_="c 7 -#000000 B 4 8165.98 88.58 8185.95 80.16 8216.81 67.15 8239.17 57.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8240.1 60 8245.59 55.02 8238.19 55.48 ", pos="e,8247,54.434 8166,88.578 8185.9,80.162 8216.8,67.153 8239.2,57.729"]; detect_variants -> pindel_filtered_vcf [_draw_="c 7 -#000000 B 7 8198.39 88.5 8234.24 82.33 8282.74 73.29 8325 63 8332.44 61.19 8340.36 59 8347.85 56.8 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8348.31 59.22 8354.31 54.87 8346.9 54.53 ", pos="e,8355.8,54.437 8198.4,88.502 8234.2,82.332 8282.7,73.287 8325,63 8332.4,61.188 8340.4,59 8347.8,56.804"]; detect_variants -> vep_summary [_draw_="c 7 -#000000 B 7 8215.33 93.37 8274.57 89.2 8361.75 80.53 8436 63 8442.29 61.51 8448.91 59.45 8455.12 57.28 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8455.57 59.72 8461.3 55.01 8453.88 55.12 ", pos="e,8462.7,54.493 8215.3,93.369 8274.6,89.202 8361.8,80.533 8436,63 8442.3,61.514 8448.9,59.452 8455.1,57.276"]; detect_variants -> final_vcf [_draw_="c 7 -#000000 B 7 8215.41 94.19 8308.82 89.81 8469.75 80.07 8526 63 8529.95 61.8 8534 60.13 8537.84 58.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8538.89 60.52 8544 55.14 8536.65 56.17 ", pos="e,8545.3,54.449 8215.4,94.185 8308.8,89.815 8469.7,80.071 8526,63 8530,61.8 8534,60.134 8537.8,58.312"]; detect_variants -> docm_filtered_vcf [_draw_="c 7 -#000000 B 7 8215.37 97.5 8303.13 96.81 8458.45 91.14 8588 63 8595.58 61.35 8603.63 59.18 8611.18 56.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8611.72 59.33 8617.69 54.93 8610.28 54.64 ", pos="e,8619.1,54.49 8215.4,97.5 8303.1,96.805 8458.5,91.14 8588,63 8595.6,61.353 8603.6,59.175 8611.2,56.931"]; detect_variants -> tumor_indel_bam_readcount_tsv [_draw_="c 7 -#000000 B 7 8215.37 96.16 8320.02 94.12 8524.29 87.11 8696 63 8709.72 61.07 8724.51 58.54 8738.14 56.03 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8738.53 58.44 8744.96 54.74 8737.63 53.63 ", pos="e,8746.4,54.466 8215.4,96.164 8320,94.124 8524.3,87.112 8696,63 8709.7,61.073 8724.5,58.543 8738.1,56.026"]; detect_variants -> tumor_snv_bam_readcount_tsv [_draw_="c 7 -#000000 B 7 8215.5 97.32 8345.64 97.14 8634.74 93.01 8876 63 8889.83 61.28 8904.75 58.71 8918.35 56.09 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8918.74 58.51 8925.14 54.75 8917.8 53.71 ", pos="e,8926.6,54.462 8215.5,97.324 8345.6,97.143 8634.7,93.009 8876,63 8889.8,61.28 8904.8,58.713 8918.3,56.093"]; detect_variants -> varscan_unfiltered_vcf [_draw_="c 7 -#000000 B 10 8215.2 95.78 8329.06 93.63 8563.05 88.54 8761 80 8889.99 74.44 8923.41 82.74 9051 63 9061.01 61.45 9071.69 59.08 \ 9081.53 56.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 9081.94 59.01 9088.09 54.87 9080.7 54.27 ", pos="e,9089.6,54.489 8215.2,95.784 8329.1,93.627 8563,88.536 8761,80 8890,74.438 8923.4,82.743 9051,63 9061,61.452 9071.7,59.077 9081.5,\ 56.589"]; detect_variants -> normal_snv_bam_readcount_tsv [_draw_="c 7 -#000000 B 10 8076.58 97.52 7944.74 98.03 7649.14 96.95 7401 80 7334.5 75.46 7317.92 72.84 7252 63 7238.56 60.99 7224.09 58.48 \ 7210.68 56.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7211.31 53.64 7203.98 54.76 7210.41 58.46 ", pos="e,7202.5,54.486 8076.6,97.516 7944.7,98.03 7649.1,96.952 7401,80 7334.5,75.457 7317.9,72.839 7252,63 7238.6,60.995 7224.1,58.485 \ 7210.7,56.014"]; detect_variants -> strelka_filtered_vcf [_draw_="c 7 -#000000 B 10 8076.58 96.6 7927.25 95.53 7579.53 91.8 7462 80 7418.89 75.67 7408.21 72.79 7366 63 7358.13 61.18 7349.76 58.94 \ 7341.86 56.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7343.02 54.49 7335.62 54.9 7341.66 59.19 ", pos="e,7334.2,54.474 8076.6,96.601 7927.2,95.525 7579.5,91.799 7462,80 7418.9,75.672 7408.2,72.79 7366,63 7358.1,61.176 7349.8,58.942 \ 7341.9,56.702"]; detect_variants -> final_tsv [_draw_="c 7 -#000000 B 10 8076.75 96.03 7975.8 94.33 7782.32 89.99 7618 80 7533.37 74.86 7509.42 86.63 7428 63 7423.85 61.8 7419.61 60.06 \ 7415.62 58.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7417 56.1 7409.66 55.05 7414.74 60.45 ", pos="e,7408.3,54.353 8076.8,96.029 7975.8,94.328 7782.3,89.989 7618,80 7533.4,74.856 7509.4,86.631 7428,63 7423.9,61.796 7419.6,60.057 \ 7415.6,58.146"]; detect_variants -> mutect_unfiltered_vcf [_draw_="c 7 -#000000 B 7 8076.92 97.58 7966.24 97.49 7742.63 93.12 7556 63 7546.24 61.43 7535.83 59.07 7526.22 56.61 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7526.88 54.25 7519.48 54.82 7525.62 58.98 ", pos="e,7518,54.435 8076.9,97.582 7966.2,97.494 7742.6,93.117 7556,63 7546.2,61.425 7535.8,59.068 7526.2,56.607"]; detect_variants -> normal_indel_bam_readcount_tsv [_draw_="c 7 -#000000 B 7 8076.75 93.59 7996.07 89.05 7858.9 79.61 7742 63 7727.86 60.99 7712.59 58.43 7698.53 55.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7699.22 53.55 7691.89 54.71 7698.34 58.37 ", pos="e,7690.4,54.444 8076.7,93.586 7996.1,89.05 7858.9,79.609 7742,63 7727.9,60.99 7712.6,58.434 7698.5,55.917"]; detect_variants -> mutect_filtered_vcf [_draw_="c 7 -#000000 B 7 8076.56 91.91 8017.92 86.87 7931.94 77.74 7858 63 7849.64 61.33 7840.74 59.08 7832.43 56.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7833.22 54.44 7825.82 54.86 7831.87 59.15 ", pos="e,7824.4,54.446 8076.6,91.91 8017.9,86.871 7931.9,77.742 7858,63 7849.6,61.333 7840.7,59.083 7832.4,56.766"]; detect_variants -> strelka_unfiltered_vcf [_draw_="c 7 -#000000 B 7 8102.9 88.55 8070.18 81.99 8024.14 72.46 7984 63 7975.57 61.01 7966.56 58.75 7958.02 56.54 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7958.86 54.22 7951.47 54.82 7957.62 58.96 ", pos="e,7950,54.438 8102.9,88.551 8070.2,81.994 8024.1,72.455 7984,63 7975.6,61.014 7966.6,58.749 7958,56.535"]; detect_variants -> final_filtered_vcf [_draw_="c 7 -#000000 B 4 8127.34 88.58 8108.78 80.2 8080.12 67.27 8059.26 57.85 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8060.46 55.7 8053.07 55.06 8058.44 60.17 ", pos="e,8051.7,54.434 8127.3,88.578 8108.8,80.199 8080.1,67.267 8059.3,57.853"]; cnvkit -> normal_antitarget_coverage [_draw_="c 7 -#000000 B 16 5326.36 92.89 5336.91 91.16 5349.55 89.26 5361 88 5415.45 82.02 5430.53 91.9 5484 80 5494.71 77.62 5496.24 73.15 \ 5507 71 5587.43 54.92 5794.52 72.35 5876 63 5889 61.51 5903 58.93 5915.64 56.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5915.94 58.66 5922.25 54.76 5914.89 53.88 ", pos="e,5923.7,54.433 5326.4,92.89 5336.9,91.159 5349.6,89.258 5361,88 5415.5,82.016 5430.5,91.9 5484,80 5494.7,77.616 5496.2,73.152 5507,\ 71 5587.4,54.92 5794.5,72.352 5876,63 5889,61.508 5903,58.927 5915.6,56.22"]; cnvkit -> cn_diagram [_draw_="c 7 -#000000 B 13 5326.35 92.81 5336.9 91.06 5349.55 89.17 5361 88 5398.41 84.17 5661.42 72.39 5699 71 5736.32 69.62 5998.46 70.73 \ 6035 63 6040.67 61.8 6046.55 59.84 6052.03 57.66 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6052.82 59.99 6058.3 54.98 6050.9 55.48 ", pos="e,6059.7,54.39 5326.4,92.811 5336.9,91.065 5349.5,89.174 5361,88 5398.4,84.167 5661.4,72.392 5699,71 5736.3,69.617 5998.5,70.727 \ 6035,63 6040.7,61.8 6046.6,59.837 6052,57.662"]; cnvkit -> normal_target_coverage [_draw_="c 7 -#000000 B 7 5279.88 96.49 5216.69 94.8 5035.91 87.97 4888 63 4877.51 61.23 4866.26 58.82 4855.86 56.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4856.57 54.03 4849.19 54.78 4855.42 58.8 ", pos="e,4847.7,54.423 5279.9,96.49 5216.7,94.8 5035.9,87.973 4888,63 4877.5,61.228 4866.3,58.823 4855.9,56.379"]; cnvkit -> reference_coverage [_draw_="c 7 -#000000 B 7 5279.7 95.59 5229.37 92.26 5106.85 82.7 5006 63 4997.41 61.32 4988.27 59.05 4979.75 56.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4980.67 54.42 4973.26 54.87 4979.33 59.13 ", pos="e,4971.8,54.457 5279.7,95.588 5229.4,92.265 5106.9,82.698 5006,63 4997.4,61.323 4988.3,59.046 4979.8,56.704"]; cnvkit -> tumor_target_coverage [_draw_="c 7 -#000000 B 7 5279.61 92.33 5248.07 85.98 5190.19 74.13 5141 63 5131.85 60.93 5122.05 58.61 5112.77 56.37 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5113.63 54.06 5106.24 54.79 5112.47 58.82 ", pos="e,5104.8,54.429 5279.6,92.331 5248.1,85.98 5190.2,74.132 5141,63 5131.8,60.929 5122,58.612 5112.8,56.371"]; cnvkit -> intervals_target [_draw_="c 7 -#000000 B 4 5284.01 88.58 5265.12 80.2 5235.96 67.27 5214.73 57.85 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5215.79 55.65 5208.4 55.05 5213.81 60.13 ", pos="e,5207,54.434 5284,88.578 5265.1,80.199 5236,67.267 5214.7,57.853"]; cnvkit -> tumor_bin_level_ratios [_draw_="c 7 -#000000 B 4 5303 88.58 5303 81.52 5303 71.24 5303 62.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5305.45 62.78 5303 55.78 5300.55 62.78 ", pos="e,5303,54.265 5303,88.578 5303,81.523 5303,71.24 5303,62.547"]; cnvkit -> tumor_segmented_ratios [_draw_="c 7 -#000000 B 4 5325.79 88.58 5348.86 80.05 5384.69 66.81 5410.26 57.36 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5411.04 59.68 5416.76 54.96 5409.34 55.09 ", pos="e,5418.2,54.434 5325.8,88.578 5348.9,80.052 5384.7,66.81 5410.3,57.359"]; cnvkit -> intervals_antitarget [_draw_="c 7 -#000000 B 7 5326.32 93.34 5376.82 85.4 5493.19 66.97 5511 63 5519 61.22 5527.52 59 5535.54 56.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5536.17 59.14 5542.23 54.86 5534.83 54.42 ", pos="e,5543.7,54.449 5326.3,93.342 5376.8,85.399 5493.2,66.966 5511,63 5519,61.219 5527.5,59.005 5535.5,56.769"]; cnvkit -> tumor_antitarget_coverage [_draw_="c 7 -#000000 B 16 5326.38 93.07 5336.94 91.37 5349.58 89.45 5361 88 5396.89 83.45 5406.29 85.76 5442 80 5459.99 77.1 5463.95 73.51 \ 5482 71 5546.37 62.06 5563.6 71.73 5628 63 5640.05 61.37 5653.01 58.86 5664.83 56.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5665.04 58.72 5671.33 54.79 5663.96 53.95 ", pos="e,5672.8,54.461 5326.4,93.069 5336.9,91.373 5349.6,89.449 5361,88 5396.9,83.447 5406.3,85.759 5442,80 5460,77.099 5464,73.507 5482,\ 71 5546.4,62.059 5563.6,71.725 5628,63 5640.1,61.367 5653,58.856 5664.8,56.261"]; cnvkit -> cn_scatter_plot [_draw_="c 7 -#000000 B 16 5326.37 92.95 5336.92 91.23 5349.56 89.32 5361 88 5407.49 82.63 5420.03 88.77 5466 80 5479.26 77.47 5481.69 73.21 \ 5495 71 5620.45 50.18 5655.92 85.89 5781 63 5788.13 61.7 5795.62 59.53 5802.54 57.17 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5803.17 59.55 5808.92 54.88 5801.51 54.94 ", pos="e,5810.3,54.363 5326.4,92.949 5336.9,91.23 5349.6,89.321 5361,88 5407.5,82.63 5420,88.769 5466,80 5479.3,77.471 5481.7,73.209 5495,\ 71 5620.4,50.183 5655.9,85.885 5781,63 5788.1,61.695 5795.6,59.53 5802.5,57.175"]; tumor_index_cram -> tumor_cram [_draw_="c 7 -#000000 B 10 9302.94 54.45 9272.75 61.85 9228.4 71.54 9189 75.5 9130.55 81.38 7130.07 93.03 7074 75.5 7063.6 72.25 7053.51 \ 65.58 7045.61 59.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7047.64 57.81 7040.7 55.19 7044.49 61.57 ", pos="e,7039.5,54.217 9302.9,54.453 9272.7,61.853 9228.4,71.535 9189,75.5 9130.5,81.383 7130.1,93.034 7074,75.5 7063.6,72.249 7053.5,65.583 \ 7045.6,59.31"]; normal_bam_to_cram -> normal_index_cram [_draw_="c 7 -#000000 B 7 2068.1 97.38 1822.16 98.37 997.57 98.89 736 63 725.69 61.59 714.68 59.18 704.62 56.61 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 705.29 54.26 697.9 54.83 704.03 58.99 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 946.5 73.6 0 21 4 -cram ", label=cram, lp="946.5,75.5", pos="e,696.43,54.441 2068.1,97.375 1822.2,98.372 997.57,98.892 736,63 725.69,61.585 714.68,59.178 704.62,56.614"]; manta -> tumor_only_variants [_draw_="c 7 -#000000 B 7 6200.82 96.05 6286.36 93.83 6433.25 86.55 6557 63 6565.72 61.34 6575.02 59.07 6583.68 56.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6584.21 59.12 6590.29 54.89 6582.89 54.4 ", pos="e,6591.8,54.479 6200.8,96.049 6286.4,93.826 6433.2,86.554 6557,63 6565.7,61.339 6575,59.069 6583.7,56.728"]; manta -> somatic_variants [_draw_="c 7 -#000000 B 7 6200.9 94.92 6328.33 90.85 6588.77 80.63 6678 63 6685.65 61.49 6693.74 59.28 6701.27 56.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6701.81 59.35 6707.72 54.88 6700.31 54.69 ", pos="e,6709.2,54.413 6200.9,94.925 6328.3,90.851 6588.8,80.634 6678,63 6685.6,61.489 6693.7,59.282 6701.3,56.956"]; manta -> diploid_variants [_draw_="c 7 -#000000 B 7 6200.83 95.95 6346.8 93.38 6673.54 85.27 6783 63 6790.1 61.56 6797.58 59.42 6804.56 57.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6805.21 59.52 6811.04 54.95 6803.63 54.89 ", pos="e,6812.5,54.461 6200.8,95.953 6346.8,93.383 6673.5,85.269 6783,63 6790.1,61.556 6797.6,59.424 6804.6,57.155"]; manta -> small_candidates [_draw_="c 7 -#000000 B 10 6200.92 96.17 6307.87 94.63 6515.12 90.48 6691 80 6776.07 74.93 6798.38 79.45 6882 63 6889.71 61.48 6897.86 59.3 \ 6905.47 56.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6906.07 59.37 6912.01 54.93 6904.6 54.7 ", pos="e,6913.5,54.475 6200.9,96.17 6307.9,94.632 6515.1,90.478 6691,80 6776.1,74.932 6798.4,79.453 6882,63 6889.7,61.484 6897.9,59.297 \ 6905.5,56.994"]; manta -> all_candidates [_draw_="c 7 -#000000 B 7 6200.83 94.87 6269.63 91.64 6375.98 83.49 6466 63 6472.42 61.54 6479.17 59.45 6485.49 57.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6486.06 59.63 6491.78 54.91 6484.36 55.03 ", pos="e,6493.2,54.391 6200.8,94.871 6269.6,91.636 6376,83.49 6466,63 6472.4,61.538 6479.2,59.447 6485.5,57.229"]; normal_alignment_and_qc -> normal_per_base_hs_metrics [_draw_="c 7 -#000000 B 13 2262.73 133.66 2256.63 131.32 2250.42 128.44 2245 125 2225.37 112.52 2229.4 97.11 2208 88 2141.58 59.74 980.75 \ 70.89 909 63 895.4 61.51 880.74 58.89 867.53 56.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 868.36 53.83 861 54.76 867.33 58.62 ", pos="e,859.52,54.447 2262.7,133.66 2256.6,131.32 2250.4,128.44 2245,125 2225.4,112.52 2229.4,97.106 2208,88 2141.6,59.738 980.75,70.885 \ 909,63 895.4,61.506 880.74,58.893 867.53,56.157"]; normal_alignment_and_qc -> normal_verify_bam_id_metrics [_draw_="c 7 -#000000 B 16 2269.55 133.65 2264.51 131.26 2259.37 128.36 2255 125 2247.25 119.03 2246.63 116.01 2241 108 2230 92.35 2235.6 \ 80.52 2219 71 2205.28 63.13 1095.74 64.56 1080 63 1065.5 61.56 1049.84 58.9 1035.8 56.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1036.58 53.76 1029.23 54.76 1035.59 58.56 ", pos="e,1027.7,54.452 2269.5,133.65 2264.5,131.26 2259.4,128.36 2255,125 2247.2,119.03 2246.6,116.01 2241,108 2230,92.348 2235.6,80.518 \ 2219,71 2205.3,63.13 1095.7,64.562 1080,63 1065.5,61.561 1049.8,58.901 1035.8,56.105"]; normal_alignment_and_qc -> normal_per_target_coverage_metrics [_draw_="c 7 -#000000 B 16 2276.82 133.63 2272.8 131.1 2268.58 128.15 2265 125 2257.65 118.53 2256.55 116.06 2251 108 2240.28 92.42 2246.3 \ 80.58 2230 71 2218.66 64.33 1296.11 64.12 1283 63 1265.53 61.51 1246.57 58.75 1229.68 55.88 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1230.38 53.52 1223.06 54.73 1229.54 58.35 ", pos="e,1221.6,54.474 2276.8,133.63 2272.8,131.1 2268.6,128.15 2265,125 2257.7,118.53 2256.5,116.06 2251,108 2240.3,92.422 2246.3,80.583 \ 2230,71 2218.7,64.334 1296.1,64.12 1283,63 1265.5,61.508 1246.6,58.751 1229.7,55.885"]; normal_alignment_and_qc -> normal_summary_hs_metrics [_draw_="c 7 -#000000 B 13 2282.85 133.65 2276.02 127.1 2266.73 117.54 2260 108 2249.34 92.9 2256.73 80.71 2241 71 2222.26 59.42 1469.91 \ 65.28 1448 63 1434.12 61.55 1419.14 58.92 1405.68 56.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1406.35 53.8 1398.99 54.74 1405.33 58.59 ", pos="e,1397.5,54.429 2282.9,133.65 2276,127.1 2266.7,117.54 2260,108 2249.3,92.899 2256.7,80.713 2241,71 2222.3,59.425 1469.9,65.281 \ 1448,63 1434.1,61.555 1419.1,58.925 1405.7,56.159"]; normal_alignment_and_qc -> normal_per_base_coverage_metrics [_draw_="c 7 -#000000 B 10 2287.31 133.61 2276.82 114.87 2252.38 71.23 2252 71 2237.5 62.4 1661.79 64.52 1645 63 1628.26 61.49 1610.11 58.78 \ 1593.88 55.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1594.39 53.56 1587.07 54.74 1593.53 58.38 ", pos="e,1585.6,54.477 2287.3,133.61 2276.8,114.87 2252.4,71.227 2252,71 2237.5,62.396 1661.8,64.515 1645,63 1628.3,61.49 1610.1,58.777 \ 1593.9,55.956"]; normal_alignment_and_qc -> normal_flagstats [_draw_="c 7 -#000000 B 10 2289.81 133.6 2285.17 116.45 2273.83 78.4 2263 71 2251.16 62.91 1761.15 65.33 1747 63 1739.16 61.71 1730.88 59.49 \ 1723.26 57.08 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1724.16 54.8 1716.74 54.9 1722.6 59.44 ", pos="e,1715.3,54.419 2289.8,133.6 2285.2,116.45 2273.8,78.397 2263,71 2251.2,62.915 1761.1,65.326 1747,63 1739.2,61.711 1730.9,59.495 \ 1723.3,57.081"]; normal_alignment_and_qc -> normal_hs_metrics [_draw_="c 7 -#000000 B 10 2292.77 133.75 2293.69 118.53 2293.12 86.18 2274 71 2265.01 63.87 1872.35 64.71 1861 63 1852.13 61.66 1842.72 \ 59.37 1834.09 56.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1834.94 54.59 1827.53 54.92 1833.53 59.28 ", pos="e,1826.1,54.482 2292.8,133.75 2293.7,118.53 2293.1,86.18 2274,71 2265,63.866 1872.3,64.714 1861,63 1852.1,61.66 1842.7,59.366 1834.1,\ 56.888"]; normal_alignment_and_qc -> normal_mark_duplicates_metrics [_draw_="c 7 -#000000 B 10 2294.16 133.96 2297.61 119.07 2302.35 87.26 2285 71 2275.27 61.88 2058.27 64.41 2045 63 2029.83 61.38 2013.43 \ 58.74 1998.64 56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1999.43 53.66 1992.09 54.77 1998.52 58.47 ", pos="e,1990.6,54.485 2294.2,133.96 2297.6,119.07 2302.4,87.261 2285,71 2275.3,61.878 2058.3,64.413 2045,63 2029.8,61.384 2013.4,58.736 \ 1998.6,56.004"]; normal_alignment_and_qc -> normal_per_target_hs_metrics [_draw_="c 7 -#000000 B 10 2295.8 133.74 2301.92 119.07 2311.76 88.37 2296 71 2289.85 64.22 2223.06 64.32 2214 63 2201.01 61.1 2187.01 58.58 \ 2174.13 56.06 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2174.67 53.67 2167.33 54.71 2173.71 58.48 ", pos="e,2165.8,54.415 2295.8,133.74 2301.9,119.07 2311.8,88.373 2296,71 2289.8,64.22 2223.1,64.324 2214,63 2201,61.101 2187,58.58 2174.1,\ 56.062"]; normal_alignment_and_qc -> normal_alignment_summary_metrics [_draw_="c 7 -#000000 B 7 2301.14 133.76 2303.43 131.19 2305.63 128.18 2307 125 2315.71 104.72 2316.26 78.86 2315.45 62.36 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2317.92 62.58 2315 55.76 2313.03 62.91 ", pos="e,2314.9,54.252 2301.1,133.76 2303.4,131.19 2305.6,128.18 2307,125 2315.7,104.72 2316.3,78.858 2315.4,62.36"]; normal_alignment_and_qc -> normal_verify_bam_id_depth [_draw_="c 7 -#000000 B 4 2309.83 133.65 2346.26 116.59 2429.3 77.7 2471.45 57.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2472.39 60.23 2477.69 55.04 2470.31 55.79 ", pos="e,2479.1,54.4 2309.8,133.65 2346.3,116.59 2429.3,77.704 2471.4,57.967"]; normal_alignment_and_qc -> normal_insert_size_metrics [_draw_="c 7 -#000000 B 4 2323.98 133.56 2390.38 116.05 2543.05 75.79 2615.9 56.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2616.35 58.99 2622.5 54.84 2615.1 54.25 ", pos="e,2624,54.45 2324,133.56 2390.4,116.05 2543.1,75.788 2615.9,56.575"]; normal_alignment_and_qc -> concordance [_draw_="c 7 -#000000 B 13 2361.92 141.55 2768.29 138.94 4808.21 125.81 4810 125 4814.87 122.79 4813.14 118.23 4818 116 4830.9 110.08 5314.81 \ 108.47 5329 108 5337.48 107.72 5346.19 107.4 5354.98 107.05 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5355.02 109.5 5361.92 106.76 5354.82 104.6 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4832 118.6 0 28 5 -bam_2 ", label=bam_2, lp="4832,120.5", pos="e,5363.4,106.7 2361.9,141.55 2768.3,138.94 4808.2,125.81 4810,125 4814.9,122.79 4813.1,118.23 4818,116 4830.9,110.08 5314.8,108.47 \ 5329,108 5337.5,107.72 5346.2,107.4 5355,107.05"]; normal_alignment_and_qc -> detect_variants [_draw_="c 7 -#000000 B 13 2361.64 141.51 2568.22 140.08 3195.59 135.8 3716 133 4116 130.85 5116.09 133.61 5516 125 5619.61 122.77 5645.39 \ 118.37 5749 116 6216.38 105.32 7709.66 100.29 8068.11 99.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8068.11 101.67 8075.1 99.2 8068.1 96.77 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5774.5 118.6 0 51 10 -normal_bam ", label=normal_bam, lp="5774.5,120.5", pos="e,8076.6,99.196 2361.6,141.51 2568.2,140.08 3195.6,135.8 3716,133 4116,130.85 5116.1,133.61 5516,125 5619.6,122.77 5645.4,118.37 \ 5749,116 6216.4,105.32 7709.7,100.29 8068.1,99.222"]; normal_alignment_and_qc -> cnvkit [_draw_="c 7 -#000000 B 4 2362 141 2784.1 134.97 4981.86 103.59 5271.48 99.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5271.39 101.9 5278.35 99.35 5271.32 97 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4087 118.6 0 40 9 -reference ", label=reference, lp="4087,120.5", pos="e,5279.9,99.33 2362,141 2784.1,134.97 4981.9,103.59 5271.5,99.45"]; normal_alignment_and_qc -> normal_bam_to_cram [_draw_="c 7 -#000000 B 10 2228 133.51 2212.84 130.96 2199.04 128.03 2192 125 2185.88 122.37 2185.81 119.28 2180 116 2176.75 114.17 2173.27 \ 112.43 2169.74 110.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2170.84 108.62 2163.44 108.09 2168.89 113.12 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2201.5 118.6 0 19 3 -bam ", label=bam, lp="2201.5,120.5", pos="e,2162,107.49 2228,133.51 2212.8,130.96 2199,128.03 2192,125 2185.9,122.37 2185.8,119.28 2180,116 2176.8,114.17 2173.3,112.43 2169.7,\ 110.81"]; normal_alignment_and_qc -> manta [_draw_="c 7 -#000000 B 13 2361.64 141.54 2568.22 140.18 3195.6 136.08 3716 133 4038 131.09 4843.15 135.11 5165 125 5234.86 122.81 5252.16 \ 118.74 5322 116 5393.1 113.21 5859.35 104.15 6048.99 100.52 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6048.79 102.97 6055.75 100.39 6048.7 98.08 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5347.5 118.6 0 51 10 -normal_bam ", label=normal_bam, lp="5347.5,120.5", pos="e,6057.3,100.36 2361.6,141.54 2568.2,140.18 3195.6,136.08 3716,133 4038,131.09 4843.2,135.11 5165,125 5234.9,122.81 5252.2,118.74 \ 5322,116 5393.1,113.21 5859.4,104.15 6049,100.52"]; pad_target_intervals -> detect_variants [_draw_="c 7 -#000000 B 7 9595.78 133.54 9556.93 127.41 9501.72 119.59 9453 116 9212 98.26 8467.4 98.27 8223.92 98.78 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.98 96.33 8216.99 98.79 8223.99 101.23 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9557 118.6 0 50 13 -roi_intervals ", label=roi_intervals, lp="9557,120.5", pos="e,8215.5,98.794 9595.8,133.54 9556.9,127.41 9501.7,119.59 9453,116 9212,98.265 8467.4,98.273 8223.9,98.776"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 9405 133.5 9405 152.5 9441 152.5 9441 133.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9423 140.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="9423,143", rects="9405,133.5,9441,152.5", width=0.5]; default1 -> detect_variants [_draw_="c 7 -#000000 B 13 9405.37 134.3 9403.91 133.81 9402.44 133.37 9401 133 9369.8 125.05 9359.34 135.77 9329 125 9322.03 122.53 9322.08 \ 118.14 9315 116 9262.88 100.28 8476.94 98.97 8223.87 98.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8223.97 96.51 8216.97 98.96 8223.97 101.41 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9372 118.6 0 86 18 -strelka_exome_mode ", label=strelka_exome_mode, lp="9372,120.5", pos="e,8215.5,98.956 9405.4,134.3 9403.9,133.81 9402.4,133.37 9401,133 9369.8,125.05 9359.3,135.77 9329,125 9322,122.53 9322.1,118.14 \ 9315,116 9262.9,100.28 8476.9,98.969 8223.9,98.956"]; }