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[label=\"url_protein_fasta\"];\n  \"path_genomic_fasta\" -> \"download\" [label=\"path_genomic_fasta\"];\n  \"url_genomic_gff\" -> \"download\" [label=\"url_genomic_gff\"];\n  \"path_genomic_gff\" -> \"download\" [label=\"path_genomic_gff\"];\n  \"path_transcript_fasta\" -> \"download\" [label=\"path_transcript_fasta\"];\n  \"url_transcript_fasta\" -> \"download\" [label=\"url_transcript_fasta\"];\n  \"url_cds_fasta\" -> \"download\" [label=\"url_cds_fasta\"];\n  \"path_genomic_fasta\" -> \"gaps_or_not\" [label=\"fasta_file\"];\n  \"md5checksums\" -> \"gaps_or_not\" [label=\"fasta_file\"];\n  \"url_cds_fasta\" -> \"create_genePrediction_readme\" [label=\"url_cds_fasta\"];\n  \"tree\" -> \"create_genePrediction_readme\" [label=\"tree\"];\n  \"add_annotation\" -> \"create_genePrediction_readme\" [label=\"processed_gff\"];\n  \"url_genomic_gff\" -> \"create_genePrediction_readme\" [label=\"url_genomic_gff\"];\n  \"path_genomic_gff\" -> \"create_genePrediction_readme\" [label=\"original_gff\"];\n  \"md5checksums\" -> \"create_genePrediction_readme\" [label=\"original_gff\"];\n  \"url_protein_fasta\" -> \"create_genePrediction_readme\" [label=\"url_protein_fasta\"];\n  \"link_to_publication\" -> \"create_genePrediction_readme\" [label=\"link_to_publication\"];\n  \"organization\" -> \"create_genePrediction_readme\" [label=\"organization\"];\n  \"url_transcript_fasta\" -> \"create_genePrediction_readme\" [label=\"url_transcript_fasta\"];\n  \"path_GO\" -> \"create_genePrediction_readme\" [label=\"path_GO\"];\n  \"apollo2_data_processing\" -> \"dispatch\" [label=\"in_names\"];\n  \"path_genomic_fasta\" -> \"dispatch\" [label=\"in_genomic_fasta\"];\n  \"md5checksums\" -> \"dispatch\" [label=\"in_genomic_fasta\"];\n  \"deepPATH_apollo2_data\" -> \"dispatch\" [label=\"deepPATH_apollo2_data\"];\n  \"apollo2_data_processing\" -> \"dispatch\" [label=\"in_trackList_json\"];\n  \"apollo2_data_processing\" -> \"dispatch\" [label=\"in_seq\"];\n  \"md5checksums\" -> \"dispatch\" [label=\"in_check\"];\n  \"PATH\" -> \"dispatch\" [label=\"PATH\"];\n  \"apollo2_data_processing\" -> \"dispatch\" [label=\"in_gc_bigwig\"];\n  \"apollo2_data_processing\" -> \"dispatch\" [label=\"in_trackList_json_bak\"];\n  \"apollo2_data_processing\" -> \"dispatch\" [label=\"in_2bi\"];\n  \"path_genomic_gff\" -> \"dispatch\" [label=\"original_gff\"];\n  \"md5checksums\" -> \"dispatch\" [label=\"original_gff\"];\n  \"path_cds_fasta\" -> \"dispatch\" [label=\"in_cds_fasta\"];\n  \"md5checksums\" -> \"dispatch\" [label=\"in_cds_fasta\"];\n  \"apollo2_data_processing\" -> \"dispatch\" [label=\"in_gaps_bigwig\"];\n  \"deepPATH_genomic_fasta\" -> \"dispatch\" [label=\"deepPATH_genomic_fasta\"];\n  \"create_assembly_readme\" -> \"dispatch\" [label=\"in_assembly_readme\"];\n  \"deepPATH_analyses\" -> \"dispatch\" [label=\"deepPATH_analyses\"];\n  \"tree\" -> \"dispatch\" [label=\"tree\"];\n  \"download\" -> \"dispatch\" [label=\"url_string\"];\n  \"add_annotation\" -> \"dispatch\" [label=\"processed_gff\"];\n  \"md5checksums\" -> \"dispatch\" [label=\"in_extract\"];\n  \"path_transcript_fasta\" -> \"dispatch\" [label=\"in_transcript_fasta\"];\n  \"md5checksums\" -> \"dispatch\" [label=\"in_transcript_fasta\"];\n  \"path_protein_fasta\" -> \"dispatch\" [label=\"in_protein_fasta\"];\n  \"md5checksums\" -> \"dispatch\" [label=\"in_protein_fasta\"];\n  \"path_genomic_gff\" -> \"dispatch\" [label=\"in_genomic_gff\"];\n  \"add_annotation\" -> \"dispatch\" [label=\"in_genomic_gff\"];\n  \"md5checksums\" -> \"dispatch\" [label=\"in_genomic_gff\"];\n  \"apollo2_data_processing\" -> \"dispatch\" [label=\"in_tracks\"];\n  \"create_genePrediction_readme\" -> \"dispatch\" [label=\"in_genePrediction_readme\"];\n  \"gaps_or_not\" -> \"dispatch\" [label=\"gap_lines\"];\n  \"deepPATH_bigwig\" -> \"dispatch\" [label=\"deepPATH_bigwig\"];\n  \"download\" -> \"dispatch\" [label=\"in_md5checksums\"];\n  \"apollo2_data_processing\" -> \"dispatch\" [label=\"in_tracks_conf\"];\n  \"path_PathAnnotatorGMT\" -> \"add_annotation\" [label=\"in_PathAnnotatorGMT\"];\n  \"path_genomic_gff\" -> \"add_annotation\" [label=\"in_gff\"];\n  \"md5checksums\" -> \"add_annotation\" [label=\"in_gff\"];\n  \"path_GO\" -> \"add_annotation\" [label=\"in_GO\"];\n  \"annotate_egap\" -> \"add_annotation\" [label=\"annotate_egap\"];\n  \"annotate_cds\" -> \"add_annotation\" [label=\"annotate_cds\"];\n  \"scientific_name\" -> \"create_assembly_readme\" [label=\"scientific_name\"];\n  \"url_genomic_fasta\" -> \"create_assembly_readme\" [label=\"url_genomic_fasta\"];\n  \"tree\" -> \"create_assembly_readme\" [label=\"tree\"];\n  \"organization\" -> \"create_assembly_readme\" [label=\"organization\"];\n  \"link_to_publication\" -> \"create_assembly_readme\" [label=\"link_to_publication\"];\n  \"gff_release_number\" -> \"apollo2_data_processing\" [label=\"gff_release_number\"];\n  \"tree\" -> \"apollo2_data_processing\" [label=\"tree\"];\n  \"url_genomic_gff\" -> \"apollo2_data_processing\" [label=\"url_genomic_gff\"];\n  \"path_genomic_gff\" -> \"apollo2_data_processing\" [label=\"in_gff\"];\n  \"add_annotation\" -> \"apollo2_data_processing\" [label=\"in_gff\"];\n  \"md5checksums\" -> \"apollo2_data_processing\" [label=\"in_gff\"];\n  \"gaps_or_not\" -> \"apollo2_data_processing\" [label=\"gap_lines\"];\n  \"scientific_name\" -> \"apollo2_data_processing\" [label=\"scientific_name\"];\n  \"path_genomic_fasta\" -> \"apollo2_data_processing\" [label=\"in_fasta\"];\n  \"md5checksums\" -> \"apollo2_data_processing\" [label=\"in_fasta\"];\n  \"path_cds_fasta\" -> \"md5checksums\" [label=\"path_cds_fasta\"];\n  \"url_genomic_gff\" -> \"md5checksums\" [label=\"url_genomic_gff\"];\n  \"path_protein_fasta\" -> \"md5checksums\" [label=\"path_protein_fasta\"];\n  \"url_cds_fasta\" -> \"md5checksums\" [label=\"url_cds_fasta\"];\n  \"download\" -> \"md5checksums\" [label=\"in_protein_fasta\"];\n  \"download\" -> \"md5checksums\" [label=\"in_cds_fasta\"];\n  \"path_genomic_fasta\" -> \"md5checksums\" [label=\"path_genomic_fasta\"];\n  \"download\" -> \"md5checksums\" [label=\"url_string\"];\n  \"url_genomic_fasta\" -> \"md5checksums\" [label=\"url_genomic_fasta\"];\n  \"download\" -> \"md5checksums\" [label=\"in_md5checksums\"];\n  \"path_genomic_gff\" -> \"md5checksums\" [label=\"path_genomic_gff\"];\n  \"download\" -> \"md5checksums\" [label=\"in_genomic_gff\"];\n  \"path_transcript_fasta\" -> \"md5checksums\" [label=\"path_transcript_fasta\"];\n  \"url_protein_fasta\" -> \"md5checksums\" [label=\"url_protein_fasta\"];\n  \"url_transcript_fasta\" -> \"md5checksums\" [label=\"url_transcript_fasta\"];\n  \"download\" -> \"md5checksums\" [label=\"in_transcript_fasta\"];\n  \"download\" -> \"md5checksums\" [label=\"in_genomic_fasta\"];\n}\n","permalink":"https://w3id.org/cwl/view/git/e332b88ced14c57ec7a0f2edbdcd61afb1228e77/final-workflow.cwl","packed":false,"visualisationXdot":"/graph/xdot/github.com/nal-i5k/organism_onboarding/blob/e332b88ced14c57ec7a0f2edbdcd61afb1228e77/final-workflow.cwl","visualisationPng":"/graph/png/github.com/nal-i5k/organism_onboarding/blob/e332b88ced14c57ec7a0f2edbdcd61afb1228e77/final-workflow.cwl","visualisationSvg":"/graph/svg/github.com/nal-i5k/organism_onboarding/blob/e332b88ced14c57ec7a0f2edbdcd61afb1228e77/final-workflow.cwl","roBundle":"/robundle/github.com/nal-i5k/organism_onboarding/blob/e332b88ced14c57ec7a0f2edbdcd61afb1228e77/final-workflow.cwl"}