@prefix SecondaryFileSchema: .
@prefix rdf: .
@prefix CommandLineBinding: .
@prefix xsd: .
@prefix DockerRequirement: .
@prefix cwl: .
@prefix Workflow: .
@prefix sld: .
@prefix CommandOutputBinding: .
@prefix ns1: .
sld:type xsd:string .
cwl:source .
cwl:outputSource ;
sld:type cwl:File .
sld:type xsd:int .
cwl:source .
cwl:inputBinding [ CommandLineBinding:prefix
"-l" ] ;
sld:type xsd:int .
cwl:source .
a cwl:CommandLineTool ;
ns1:original_cwlVersion "v1.1" ;
cwl:arguments ( "fixed-batch" "-o" "$(runtime.outdir)" "--writer" "zip" ) ;
cwl:baseCommand ( "classify.py" ) ;
cwl:cwlVersion ;
cwl:inputs , , , , , , , ;
cwl:outputs ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ] ;
cwl:requirements [ a cwl:DockerRequirement ;
DockerRequirement:dockerPull "crs4/slaid:1.1.0-beta.25-tumor_model-level_1-v2.2-cudnn"
] ;
cwl:requirements [ a cwl:InitialWorkDirRequirement ;
cwl:listing "$(inputs.src)"
] .
cwl:source .
cwl:source .
sld:type xsd:int , sld:null .
sld:type xsd:int .
cwl:in , , , , , ;
cwl:out ;
cwl:run .
cwl:source .
cwl:in , , , , , , , ;
cwl:out ;
cwl:run .
cwl:source .
cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.src.basename).zip" ;
CommandOutputBinding:outputEval
"${self[0].basename=inputs.label + '.zip'; return self[0];}"
] ;
sld:type cwl:File .
cwl:source .
sld:type xsd:string .
cwl:inputBinding [ CommandLineBinding:prefix
"-L" ] ;
sld:type xsd:string .
cwl:source .
sld:type xsd:int , sld:null .
cwl:source .
sld:type xsd:int .
cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.src.basename).zip" ;
CommandOutputBinding:outputEval
"${self[0].basename=inputs.label + '.zip'; return self[0];}"
] ;
cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.src.basename).zip" ;
CommandOutputBinding:outputEval
"${self[0].basename=inputs.label + '.zip'; return self[0];}"
] ;
sld:type cwl:File .
cwl:source .
sld:type xsd:int , sld:null .
cwl:source .
cwl:source .
sld:type xsd:int , sld:null .
sld:type xsd:int , sld:null .
sld:type xsd:int , sld:null .
sld:type xsd:string .
cwl:inputBinding [ CommandLineBinding:prefix
"-l" ] ;
cwl:inputBinding [ CommandLineBinding:prefix
"-l" ] ;
sld:type xsd:int .
cwl:source .
cwl:inputBinding [ CommandLineBinding:prefix
"--filter-slide" ] ;
sld:type cwl:File , sld:null .
cwl:source .
sld:type xsd:string .
cwl:source .
cwl:outputSource ;
sld:type cwl:File .
a cwl:Workflow ;
ns1:original_cwlVersion "v1.1" ;
Workflow:steps , , ;
cwl:cwlVersion ;
cwl:inputs , , , , , , , , , , , , , , , ;
cwl:outputs , ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ] .
cwl:inputBinding [ CommandLineBinding:prefix
"-L" ] ;
cwl:inputBinding [ CommandLineBinding:prefix
"-L" ] ;
sld:type xsd:string .
cwl:source .
cwl:secondaryFiles [ SecondaryFileSchema:pattern "${\n if (self.nameext == '.mrxs') {\n return {\n class: \"Directory\",\n location: self.location.match(/.*\\//)[0] + \"/\" + self.nameroot,\n basename: self.nameroot};\n }\n else return null;\n}" ;
SecondaryFileSchema:required false
] ;
sld:type cwl:File .
cwl:source .
cwl:source .
cwl:inputBinding [ CommandLineBinding:position
1 ] ;
cwl:secondaryFiles [ SecondaryFileSchema:pattern "${\n if (self.nameext == '.mrxs') {\n return {\n class: \"Directory\",\n location: self.location.match(/.*\\//)[0] + \"/\" + self.nameroot,\n basename: self.nameroot};\n }\n else return null;\n}" ;
SecondaryFileSchema:required false
] ;
sld:type cwl:File .
sld:type xsd:int , sld:null .
sld:type xsd:int , sld:null .
cwl:inputBinding [ CommandLineBinding:prefix
"--filter-slide" ] ;
cwl:inputBinding [ CommandLineBinding:prefix
"--filter-slide" ] ;
sld:type cwl:File , sld:null .
sld:type xsd:int , sld:null .
cwl:inputBinding [ CommandLineBinding:position
1 ] ;
cwl:inputBinding [ CommandLineBinding:position
1 ] ;
cwl:secondaryFiles [ SecondaryFileSchema:pattern "${\n if (self.nameext == '.mrxs') {\n return {\n class: \"Directory\",\n location: self.location.match(/.*\\//)[0] + \"/\" + self.nameroot,\n basename: self.nameroot};\n }\n else return null;\n}" ;
SecondaryFileSchema:required false
] ;
cwl:secondaryFiles [ SecondaryFileSchema:pattern "${\n if (self.nameext == '.mrxs') {\n return {\n class: \"Directory\",\n location: self.location.match(/.*\\//)[0] + \"/\" + self.nameroot,\n basename: self.nameroot};\n }\n else return null;\n}" ;
SecondaryFileSchema:required false
] ;
sld:type cwl:File .
cwl:source .
sld:type xsd:int , sld:null .
cwl:inputBinding [ CommandLineBinding:prefix
"-F" ] ;
sld:type xsd:string , sld:null .
cwl:in , , , , , , , ;
cwl:out ;
cwl:run .
cwl:source .
cwl:inputBinding [ CommandLineBinding:prefix
"--gpu" ] ;
sld:type xsd:int , sld:null .
cwl:inputBinding [ CommandLineBinding:prefix
"-F" ] ;
cwl:inputBinding [ CommandLineBinding:prefix
"-F" ] ;
sld:type xsd:string , sld:null .
sld:type xsd:int , sld:null .
cwl:source .
cwl:inputBinding [ CommandLineBinding:prefix
"--gpu" ] ;
cwl:inputBinding [ CommandLineBinding:prefix
"--gpu" ] ;
sld:type xsd:int , sld:null .
sld:type xsd:string .
a cwl:CommandLineTool ;
ns1:original_cwlVersion "v1.2" ;
cwl:arguments ( "fixed-batch" "-o" "$(runtime.outdir)" "--writer" "zip" ) ;
cwl:arguments ( "fixed-batch" "-o" "$(runtime.outdir)" "--writer" "zip" ) ;
cwl:baseCommand ( "classify.py" ) ;
cwl:baseCommand ( "classify.py" ) ;
cwl:cwlVersion ;
cwl:inputs , , , , , , , ;
cwl:outputs ;
cwl:requirements [ a cwl:InitialWorkDirRequirement ;
cwl:listing "$(inputs.src)"
] ;
cwl:requirements [ a cwl:DockerRequirement ;
DockerRequirement:dockerPull "crs4/slaid:1.1.0-beta.25-tissue_model-eddl_2-cudnn"
] ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ] ;
cwl:requirements [ a cwl:InitialWorkDirRequirement ;
cwl:listing "$(inputs.src)"
] ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ] ;
cwl:requirements [ a cwl:DockerRequirement ;
DockerRequirement:dockerPull "crs4/slaid:1.1.0-beta.25-tissue_model-eddl_2-cudnn"
] .