absl-py==2.1.0
aiohappyeyeballs==2.4.0
aiohttp==3.10.5
aiosignal==1.3.1
anndata==0.10.9
annoy==1.17.3
array_api_compat==1.8
astunparse==1.6.3
attrs==24.2.0
bbknn==1.6.0
beautifulsoup4==4.12.3
celltypist==1.6.3
certifi==2024.8.30
charset-normalizer==3.3.2
chex==0.1.86
click==8.1.7
contextlib2==21.6.0
contourpy==1.3.0
cycler==0.12.1
Cython==3.0.11
docrep==0.3.2
et-xmlfile==1.1.0
etils==1.9.4
fbpca==1.0
filelock==3.15.4
flatbuffers==24.3.25
flax==0.9.0
fonttools==4.53.1
frozenlist==1.4.1
fsspec==2024.9.0
gast==0.6.0
gdown==5.2.0
geosketch==1.2
google-pasta==0.2.0
grpcio==1.66.1
h5py==3.11.0
harmony-pytorch==0.1.8
huggingface-hub==0.24.6
humanize==4.10.0
idna==3.8
igraph==0.11.6
importlib_resources==6.4.4
intervaltree==3.1.0
jax==0.4.31
jaxlib==0.4.31
Jinja2==3.1.4
joblib==1.4.2
keras==3.5.0
kiwisolver==1.4.7
legacy-api-wrap==1.4
leidenalg==0.10.2
libclang==18.1.1
lightning==2.1.4
lightning-utilities==0.11.7
llvmlite==0.43.0
Markdown==3.7
markdown-it-py==3.0.0
MarkupSafe==2.1.5
matplotlib==3.9.2
mdurl==0.1.2
ml-dtypes==0.4.0
ml_collections==0.1.1
mpmath==1.3.0
msgpack==1.0.8
mudata==0.3.1
multidict==6.0.5
multipledispatch==1.0.0
namex==0.0.8
natsort==8.4.0
nest-asyncio==1.6.0
networkx==3.3
numba==0.60.0
numpy==1.26.4
numpyro==0.15.2
nvidia-cublas-cu12==12.1.3.1
nvidia-cuda-cupti-cu12==12.1.105
nvidia-cuda-nvrtc-cu12==12.1.105
nvidia-cuda-runtime-cu12==12.1.105
nvidia-cudnn-cu12==9.1.0.70
nvidia-cufft-cu12==11.0.2.54
nvidia-curand-cu12==10.3.2.106
nvidia-cusolver-cu12==11.4.5.107
nvidia-cusparse-cu12==12.1.0.106
nvidia-nccl-cu12==2.20.5
nvidia-nvjitlink-cu12==12.6.68
nvidia-nvtx-cu12==12.1.105
obonet==1.1.0
OnClass==1.3
openpyxl==3.1.5
opt-einsum==3.3.0
optax==0.2.3
optree==0.12.1
orbax-checkpoint==0.6.1
packaging==24.1
pandas==1.5.3
patsy==0.5.6
pillow==10.4.0
PopV @ git+https://github.com/czbiohub/PopV@2d29c9a290d2015ec65ef0ef9f0e6b6d2277e7bb
protobuf==4.25.4
psutil==6.0.0
Pygments==2.18.0
pynndescent==0.5.13
pyparsing==3.1.4
pyro-api==0.1.2
pyro-ppl==1.9.1
PySocks==1.7.1
python-dateutil==2.9.0.post0
pytorch-lightning==2.4.0
pytz==2024.1
PyYAML==6.0.2
regex==2024.7.24
requests==2.32.3
rich==13.8.0
safetensors==0.4.5
scanorama==1.7.4
scanpy==1.10.2
scikit-learn==1.1.3
scikit-misc==0.5.1
scipy==1.14.1
scvi-tools==1.1.6
seaborn==0.13.2
sentence-transformers==3.0.1
session_info==1.0.0
six==1.16.0
sortedcontainers==2.4.0
soupsieve==2.6
statsmodels==0.14.2
stdlib-list==0.10.0
sympy==1.13.2
tensorboard==2.17.1
tensorboard-data-server==0.7.2
tensorflow==2.17.0
tensorflow-io-gcs-filesystem==0.37.1
tensorstore==0.1.65
termcolor==2.4.0
texttable==1.7.0
threadpoolctl==3.5.0
tokenizers==0.19.1
toolz==0.12.1
torch==2.4.1
torchmetrics==1.4.1
tqdm==4.66.5
transformers==4.44.2
triton==3.0.0
typing_extensions==4.12.2
umap-learn==0.5.6
urllib3==2.2.2
Werkzeug==3.0.4
wget==3.2
wrapt==1.16.0
yarl==1.9.11
zenodo-get==1.5.1
zipp==3.20.1
