@prefix CommandLineBinding: . @prefix xsd: . @prefix DockerRequirement: . @prefix Workflow: . @prefix InlineJavascriptRequirement: . @prefix sld: . @prefix rdfs: . @prefix CommandOutputBinding: . @prefix ns1: . @prefix NetworkAccess: . @prefix InplaceUpdateRequirement: . @prefix rdf: . @prefix ScatterMethod: . @prefix Dirent: . @prefix cwl: . @prefix ResourceRequirement: . @prefix ExpressionTool: . cwl:outputSource , , ; cwl:pickValue "first_non_null" ; sld:type cwl:File . cwl:source ; cwl:valueFrom "$(self[0].basename.split('_')[0]+'_')" . a cwl:Workflow ; rdfs:label "concat" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , ; cwl:outputs , , . sld:default 2 . rdfs:comment "MS to compare with" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . cwl:source . cwl:source . sld:type cwl:File , sld:null . cwl:source . cwl:source . sld:default true . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . sld:default "faraday" . sld:default "pol" . sld:default true . sld:default "apply_targ_amp_2" . sld:default "tec000" . sld:type xsd:float , sld:null . cwl:source . sld:type xsd:float , sld:null . cwl:source . sld:type cwl:Directory . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "avg.freqstep=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default 1 ; sld:type xsd:int , sld:null . cwl:source . sld:type xsd:boolean , sld:null . rdfs:comment "BDSF extended source detection" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-t" ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "wsclean" ; cwl:in , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , , ; cwl:run . cwl:source . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string , sld:null . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; sld:type xsd:string . rdfs:comment "Step size in time for subsequent plotting\n" ; sld:type sld:null ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] . sld:default "TGSS" ; sld:type xsd:string , sld:null . cwl:source . sld:default 5e-01 . cwl:pickValue "the_only_non_null" ; cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:prefix "count1.jsonfilename=" ; CommandLineBinding:separate false ] ; sld:default "out1.json" ; sld:type xsd:string , sld:null . sld:default true . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).minfreq)" ; cwl:loadContents true ] ; sld:type xsd:float . cwl:source . sld:default "MODEL_DATA" . sld:default "[CS001LBA,CS002LBA,CS003LBA,CS004LBA,CS005LBA,CS006LBA,CS007LBA,CS011LBA,CS013LBA,CS017LBA,CS021LBA,CS024LBA,CS026LBA,CS028LBA,CS030LBA,CS031LBA,CS032LBA,CS101LBA,CS103LBA,CS201LBA,CS301LBA,CS302LBA,CS401LBA,CS501LBA,RS106LBA,RS205LBA,RS305LBA,RS306LBA,RS503LBA]" . cwl:outputSource ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "Output logfile" ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory . rdfs:comment "The FHWM of the image" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--fwhm" ] ; sld:type xsd:float . sld:type xsd:float , sld:null . cwl:source . rdfs:comment "A list of lists specifying groups of antennas that are to be constrained to have the same solution." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.autoweight=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . sld:default true . rdfs:label "merge_skymodels" ; cwl:in , , ; cwl:out , ; cwl:run . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . sld:default "sol000" . cwl:outputBinding [ CommandOutputBinding:glob "Ateam_separation.log" ] ; sld:type cwl:File . sld:default 4 ; sld:type xsd:int , sld:null . rdfs:label "concat_logfiles_calib_targ_amp" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . sld:default true . sld:default "MODEL_DATA" . sld:default false . cwl:source . cwl:outputSource ; sld:type cwl:Directory . sld:default "10arcsec" . sld:default "97.64kHz" ; sld:type xsd:string , sld:null . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:label "losoto_plot_RM" ; cwl:in , , , , ; cwl:out , , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "DP3*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default false ; sld:type xsd:boolean , sld:null . sld:type xsd:string , sld:null . sld:default 250 . sld:default 1e-03 . cwl:source . a cwl:CommandLineTool ; rdfs:label "AOFlagger" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "aoflagger" ) ; cwl:baseCommand ( "aoflagger" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:stderr "aoflag_err.log" ; cwl:stdout "aoflag.log" . cwl:source . cwl:source . cwl:source . sld:default "apply_targ" . cwl:source . sld:default 20 ; sld:type xsd:int , sld:null . sld:type xsd:int , sld:null . cwl:source ; cwl:valueFrom "$(\"ph_\"+self+\"_\")" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:outputSource ; sld:type xsd:string . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "python3" "check_fraction.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin 8 ] ; cwl:inputs , ; cwl:outputs , , , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ cwl:entry "import sys\nimport json\nimport os\nimport casacore.tables as pt\n\nfrom check_unflagged_fraction import main as check_unflagged_fraction\n\nms = sys.argv[1]\ninputs = json.loads(r'''$(inputs)''')\nmsin = inputs['msin']\nmin_fraction = inputs['min_fraction']\n\noutput = check_unflagged_fraction(ms, min_fraction = min_fraction, print_fraction = True)\n\nfilename = os.path.basename(output['filename'].rstrip('/'))\nunflagged_fraction = output['unflagged_fraction']\nflagged = output['flagged']\n\nt = pt.table(ms, readonly = True, ack = False)\ntfreq = pt.table(t.getkeyword('SPECTRAL_WINDOW'), readonly = True, ack = False)\nref_freq = tfreq.getcol('REF_FREQUENCY', nrow = 1)[0]\n\ncwl_output = {}\ncwl_output['unflagged_fraction'] = unflagged_fraction\ncwl_output['frequency'] = ref_freq\n\nif 'listing' in inputs['msin'].keys():\n del inputs['msin']['listing']\nif flagged != 'None':\n cwl_output['msout'] = [inputs['msin']]\n cwl_output['msout'][0]['path'] = output['filename']\n cwl_output['filename'] = 'None'\nelse:\n cwl_output['msout'] = []\n cwl_output['filename'] = filename\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "check_fraction.py" ] ] ; cwl:stderr "check_unflagged_fraction_err.log" ; cwl:stdout "check_unflagged_fraction.log" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:int , sld:null , xsd:boolean . rdfs:label "losoto_plot_Pd" ; cwl:in , , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . sld:default 2 . rdfs:comment "Maximum allowable standard deviation when outlier clipping is done. For phases, this should value\nshould be in radians, for amplitudes in log(amp). If None (or negative), a value of 0.1 rad is\nused for phases and 0.01 for amplitudes.\n" ; sld:type xsd:float , sld:null . rdfs:label "losoto_plot_phasediff" ; cwl:in , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . sld:default "scalarphase" . cwl:source . cwl:source . sld:type xsd:string , sld:null . sld:default "SMOOTHED_DATA" . rdfs:label "summary" ; cwl:in , , , , , , , , , , , , , ; cwl:out , ; cwl:run . sld:default true ; sld:type xsd:boolean , sld:null . rdfs:comment "A MS file containing flagging fraction statistics after clipping." ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename.split(\".\")[0])_count2.flagfreq" ] ; sld:type cwl:Directory . rdfs:comment "Output logfile" ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:label "losoto_plot_Pd" ; cwl:in , , , , , , , ; cwl:out , , ; cwl:run . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . a cwl:CommandLineTool ; rdfs:label "h5parm_pointingname" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "h5parm_pointingname.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.h5parmFile)" ] ] ; cwl:stderr "h5parm_pointingname_err.log" ; cwl:stdout "h5parm_pointingname.log" . cwl:source . sld:default 8 ; sld:type xsd:int , sld:null . cwl:source ; cwl:valueFrom "$(self.join(','))" . rdfs:comment "If set, then reference the grouping of files to this station-subband. As if a file with this station-subband would be included in the input files." ; sld:type xsd:int , sld:null . sld:type xsd:boolean , sld:null . cwl:source . rdfs:comment "Input data in MeasurementSet format." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:type cwl:Directory . rdfs:label "plot_flagged_fraction_freq" ; cwl:in ; cwl:out ; cwl:run . rdfs:label "image_tmp" ; cwl:in , , , , , ; cwl:out , , ; cwl:run . sld:default "10arcsec" . cwl:inputBinding [ CommandLineBinding:prefix "--inmodel2=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "$LINC_DATA_ROOT/skymodels/A-Team.skymodel" ; sld:type cwl:File , xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; sld:type xsd:float , sld:null . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 0 ? Math.round(self/4.e6) : 1)" . a cwl:CommandLineTool ; rdfs:label "TaQL" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "taql" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , ; cwl:outputs , ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin 2 ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "taql_err.log" ; cwl:stdout "taql.log" . cwl:source . rdfs:comment "1- or 2-element array which says the coordinates to plot (2 for 3D plots).\n" ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:type cwl:Directory , sld:null . sld:default "/tmp" ; sld:type xsd:string , sld:null . sld:type cwl:File , xsd:string , sld:null . cwl:source . cwl:outputSource ; sld:type cwl:File . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source . sld:default false ; sld:type xsd:boolean , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).demix_maxiter)" ; cwl:loadContents true ] ; sld:type xsd:int . cwl:source . sld:default true . sld:default "time" , "freq" . cwl:source . cwl:source . sld:default 30 . cwl:source . cwl:source . sld:default "apply_targ_slowtec" . sld:default "corrupt_model" . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "" ; sld:type xsd:string . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:float , xsd:boolean , sld:null . sld:default 3e+07 , 1e+09 . sld:type xsd:float , sld:null . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . cwl:source ; cwl:valueFrom "$(self == \"phase\" || self == \"scalarphase\" ? \"phase000\" : self+\"000\")" . cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; sld:type cwl:File . cwl:source . sld:type cwl:File . sld:default "MODEL_DATA" . sld:default "sol000" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "filter.baseline=" ; CommandLineBinding:separate false ; cwl:valueFrom "$(self)" ] ; sld:type xsd:string , sld:null . sld:default "/tmp" ; sld:type xsd:string , sld:null . sld:default "0,20,0" . a cwl:Workflow ; rdfs:label "faraday_rotation" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , ; cwl:outputs , . cwl:source . sld:default "CORRECTED_DATA" . sld:default 50000 . cwl:outputSource ; sld:type cwl:File . cwl:outputSource ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "Radius of the skymodel" ; sld:default 5e+00 ; sld:type xsd:float , sld:null . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--flagfreq_before" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--flagfreq_before" ] ; sld:type sld:null ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . rdfs:comment "List of model data to be reused from previous (ddecal) step(s). The list should contain the model data names, as set by a previous step" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "calibrate_target" . sld:default "CasA_Gaussian" , "CygA_Gaussian" , "TauA_Gaussian" , "VirA_Gaussian" ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "Make aoflagger reorder the measurement set before running the detection.\nThis prevents that aoflagger will use its memory reading mode, which is faster but uses more memory.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-reorder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-reorder" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:boolean , sld:null . sld:default "CORRECTED_DATA" . sld:default 1e+00 . cwl:source . sld:type cwl:File , xsd:string , sld:null . sld:default true . sld:default 8e-01 . cwl:source , ; cwl:valueFrom "$(self.join(';'))" . rdfs:comment "Name of the H5parm solset" ; sld:default "sol000" ; sld:type xsd:string , sld:null . cwl:source . sld:default "30arcsec" . rdfs:comment "saves used software versions in this LINC run\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--versions" ; CommandLineBinding:separate true ] ; sld:default "$LINC_DATA_ROOT/.versions" ; sld:type cwl:File , xsd:string , sld:null . sld:default "target" . cwl:source . sld:default 10 ; sld:type xsd:int , sld:null . cwl:source . cwl:source . sld:default 20 ; sld:type xsd:int , sld:null . sld:default true . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean . cwl:source . sld:default "sol000/phase000" . rdfs:comment "removes all axes with the length of 1" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; sld:default false ; sld:type xsd:boolean . cwl:source . cwl:source . sld:default "losoto_amp" . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 1)" . rdfs:comment "Make a plot containing antenna coordinates in x,y and in color the value\n to plot, axesInPlot must be [ant].\n" ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "avg.timestep=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default 1 ; sld:type xsd:int , sld:null . cwl:source . sld:default true . cwl:source . cwl:in , , , , , , ; cwl:out , ; cwl:run . sld:default true . sld:default true . a cwl:CommandLineTool ; rdfs:label "collect_flag_statistics" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "python3" "collect_flag_statistics.py" ) ; cwl:baseCommand ( "python3" "collect_flag_statistics.py" ) ; cwl:baseCommand ( "python3" "collect_flag_statistics.py" ) ; cwl:baseCommand ( "python3" "collect_flag_statistics.py" ) ; cwl:baseCommand ( "python3" "collect_flag_statistics.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , ; cwl:outputs , , , , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "import sys\nimport json\nimport re\nimport ast\n\ninputs = json.loads(r'''$(inputs)''')\nwith open('input.json', 'r') as f_stream:\n flagged_fraction_dict_list = json.load(f_stream)\nfilter_station = inputs['filter_station']\nno_station_selected = True\n\nwhile no_station_selected:\n print('Applying station filter ' + str(filter_station))\n flagged_fraction_data = {}\n no_station_selected = False\n for flagged_fraction_dict in flagged_fraction_dict_list:\n entry = ast.literal_eval(flagged_fraction_dict)\n antennas = entry.keys()\n selected_stations = [ station_name for station_name in antennas if re.match(filter_station, station_name) ]\n if len(selected_stations) == 0:\n print('No stations left after filtering. Station(s) do(es) not exist in all subbands. No filter is used.')\n filter_station = ''\n no_station_selected = True\n break\n for antenna in selected_stations:\n try:\n flagged_fraction_data[antenna].append(float(entry[antenna]))\n except KeyError:\n flagged_fraction_data[antenna] = [float(entry[antenna])]\n\nflagged_fraction_list = []\nsorted_stations = sorted(flagged_fraction_data.keys())\n\nflagged_fraction_antenna = {}\n\nfor antenna in sorted_stations:\n flagged_fraction = sum(flagged_fraction_data[antenna]) / len(flagged_fraction_data[antenna])\n flagged_fraction_list.append(flagged_fraction)\n flagged_fraction_antenna[antenna] = flagged_fraction\n try:\n flagged_fraction_data[flagged_fraction].append(antenna)\n except KeyError:\n flagged_fraction_data[flagged_fraction] = [antenna]\n\nmin_flagged_fraction = min(flagged_fraction_list)\nrefant = flagged_fraction_data[min_flagged_fraction][0]\nprint('Selected station ' + str(refant) + ' as reference antenna. Fraction of flagged data is ' + '{:>3}'.format('{:.1f}'.format(100 * min_flagged_fraction) + '%'))\n\nflagged_fraction_antenna['state'] = inputs['state']\n\ncwl_output = {'refant': str(refant)}\ncwl_output['bad_antennas'] = ';'.join([ '!' + station + '*' for station in flagged_fraction_antenna.keys() if flagged_fraction_antenna[station] == 1.0]).rstrip(';')\ncwl_output['filter_out'] = (inputs['filter'] + ';' + cwl_output['bad_antennas']).strip(';')\n\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n\nwith open('./flagged_fraction_antenna.json', 'w') as fp:\n json.dump(flagged_fraction_antenna, fp)\n" ; cwl:entryname "collect_flag_statistics.py" ] ; cwl:listing [ cwl:entry "$(inputs.flagged_fraction_dict)" ; cwl:entryname "input.json" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(inputs.flagged_fraction_dict)" ; cwl:entryname "input.json" ] ; cwl:listing [ cwl:entry "import sys\nimport json\nimport re\nimport ast\n\ninputs = json.loads(r'''$(inputs)''')\nwith open('input.json', 'r') as f_stream:\n flagged_fraction_dict_list = json.load(f_stream)\nfilter_station = inputs['filter_station']\nno_station_selected = True\n\nwhile no_station_selected:\n print('Applying station filter ' + str(filter_station))\n flagged_fraction_data = {}\n no_station_selected = False\n for flagged_fraction_dict in flagged_fraction_dict_list:\n entry = ast.literal_eval(flagged_fraction_dict)\n antennas = entry.keys()\n selected_stations = [ station_name for station_name in antennas if re.match(filter_station, station_name) ]\n if len(selected_stations) == 0:\n print('No stations left after filtering. Station(s) do(es) not exist in all subbands. No filter is used.')\n filter_station = ''\n no_station_selected = True\n break\n for antenna in selected_stations:\n try:\n flagged_fraction_data[antenna].append(float(entry[antenna]))\n except KeyError:\n flagged_fraction_data[antenna] = [float(entry[antenna])]\n\nflagged_fraction_list = []\nsorted_stations = sorted(flagged_fraction_data.keys())\n\nflagged_fraction_antenna = {}\n\nfor antenna in sorted_stations:\n flagged_fraction = sum(flagged_fraction_data[antenna]) / len(flagged_fraction_data[antenna])\n flagged_fraction_list.append(flagged_fraction)\n flagged_fraction_antenna[antenna] = flagged_fraction\n try:\n flagged_fraction_data[flagged_fraction].append(antenna)\n except KeyError:\n flagged_fraction_data[flagged_fraction] = [antenna]\n\nmin_flagged_fraction = min(flagged_fraction_list)\nrefant = flagged_fraction_data[min_flagged_fraction][0]\nprint('Selected station ' + str(refant) + ' as reference antenna. Fraction of flagged data is ' + '{:>3}'.format('{:.1f}'.format(100 * min_flagged_fraction) + '%'))\n\nflagged_fraction_antenna['state'] = inputs['state']\n\ncwl_output = {'refant': str(refant)}\ncwl_output['bad_antennas'] = ';'.join([ '!' + station + '*' for station in flagged_fraction_antenna.keys() if flagged_fraction_antenna[station] == 1.0]).rstrip(';')\ncwl_output['filter_out'] = (inputs['filter'] + ';' + cwl_output['bad_antennas']).strip(';')\n\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n\nwith open('./flagged_fraction_antenna.json', 'w') as fp:\n json.dump(flagged_fraction_antenna, fp)\n" ; cwl:entryname "collect_flag_statistics.py" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(inputs.flagged_fraction_dict)" ; cwl:entryname "input.json" ] ; cwl:listing [ cwl:entry "import sys\nimport json\nimport re\nimport ast\n\ninputs = json.loads(r'''$(inputs)''')\nwith open('input.json', 'r') as f_stream:\n flagged_fraction_dict_list = json.load(f_stream)\nfilter_station = inputs['filter_station']\nno_station_selected = True\n\nwhile no_station_selected:\n print('Applying station filter ' + str(filter_station))\n flagged_fraction_data = {}\n no_station_selected = False\n for flagged_fraction_dict in flagged_fraction_dict_list:\n entry = ast.literal_eval(flagged_fraction_dict)\n antennas = entry.keys()\n selected_stations = [ station_name for station_name in antennas if re.match(filter_station, station_name) ]\n if len(selected_stations) == 0:\n print('No stations left after filtering. Station(s) do(es) not exist in all subbands. No filter is used.')\n filter_station = ''\n no_station_selected = True\n break\n for antenna in selected_stations:\n try:\n flagged_fraction_data[antenna].append(float(entry[antenna]))\n except KeyError:\n flagged_fraction_data[antenna] = [float(entry[antenna])]\n\nflagged_fraction_list = []\nsorted_stations = sorted(flagged_fraction_data.keys())\n\nflagged_fraction_antenna = {}\n\nfor antenna in sorted_stations:\n flagged_fraction = sum(flagged_fraction_data[antenna]) / len(flagged_fraction_data[antenna])\n flagged_fraction_list.append(flagged_fraction)\n flagged_fraction_antenna[antenna] = flagged_fraction\n try:\n flagged_fraction_data[flagged_fraction].append(antenna)\n except KeyError:\n flagged_fraction_data[flagged_fraction] = [antenna]\n\nmin_flagged_fraction = min(flagged_fraction_list)\nrefant = flagged_fraction_data[min_flagged_fraction][0]\nprint('Selected station ' + str(refant) + ' as reference antenna. Fraction of flagged data is ' + '{:>3}'.format('{:.1f}'.format(100 * min_flagged_fraction) + '%'))\n\nflagged_fraction_antenna['state'] = inputs['state']\n\ncwl_output = {'refant': str(refant)}\ncwl_output['bad_antennas'] = ';'.join([ '!' + station + '*' for station in flagged_fraction_antenna.keys() if flagged_fraction_antenna[station] == 1.0]).rstrip(';')\ncwl_output['filter_out'] = (inputs['filter'] + ';' + cwl_output['bad_antennas']).strip(';')\n\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n\nwith open('./flagged_fraction_antenna.json', 'w') as fp:\n json.dump(flagged_fraction_antenna, fp)\n" ; cwl:entryname "collect_flag_statistics.py" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "import sys\nimport json\nimport re\nimport ast\n\ninputs = json.loads(r'''$(inputs)''')\nwith open('input.json', 'r') as f_stream:\n flagged_fraction_dict_list = json.load(f_stream)\nfilter_station = inputs['filter_station']\nno_station_selected = True\n\nwhile no_station_selected:\n print('Applying station filter ' + str(filter_station))\n flagged_fraction_data = {}\n no_station_selected = False\n for flagged_fraction_dict in flagged_fraction_dict_list:\n entry = ast.literal_eval(flagged_fraction_dict)\n antennas = entry.keys()\n selected_stations = [ station_name for station_name in antennas if re.match(filter_station, station_name) ]\n if len(selected_stations) == 0:\n print('No stations left after filtering. Station(s) do(es) not exist in all subbands. No filter is used.')\n filter_station = ''\n no_station_selected = True\n break\n for antenna in selected_stations:\n try:\n flagged_fraction_data[antenna].append(float(entry[antenna]))\n except KeyError:\n flagged_fraction_data[antenna] = [float(entry[antenna])]\n\nflagged_fraction_list = []\nsorted_stations = sorted(flagged_fraction_data.keys())\n\nflagged_fraction_antenna = {}\n\nfor antenna in sorted_stations:\n flagged_fraction = sum(flagged_fraction_data[antenna]) / len(flagged_fraction_data[antenna])\n flagged_fraction_list.append(flagged_fraction)\n flagged_fraction_antenna[antenna] = flagged_fraction\n try:\n flagged_fraction_data[flagged_fraction].append(antenna)\n except KeyError:\n flagged_fraction_data[flagged_fraction] = [antenna]\n\nmin_flagged_fraction = min(flagged_fraction_list)\nrefant = flagged_fraction_data[min_flagged_fraction][0]\nprint('Selected station ' + str(refant) + ' as reference antenna. Fraction of flagged data is ' + '{:>3}'.format('{:.1f}'.format(100 * min_flagged_fraction) + '%'))\n\nflagged_fraction_antenna['state'] = inputs['state']\n\ncwl_output = {'refant': str(refant)}\ncwl_output['bad_antennas'] = ';'.join([ '!' + station + '*' for station in flagged_fraction_antenna.keys() if flagged_fraction_antenna[station] == 1.0]).rstrip(';')\ncwl_output['filter_out'] = (inputs['filter'] + ';' + cwl_output['bad_antennas']).strip(';')\n\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n\nwith open('./flagged_fraction_antenna.json', 'w') as fp:\n json.dump(flagged_fraction_antenna, fp)\n" ; cwl:entryname "collect_flag_statistics.py" ] ; cwl:listing [ cwl:entry "$(inputs.flagged_fraction_dict)" ; cwl:entryname "input.json" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(inputs.flagged_fraction_dict)" ; cwl:entryname "input.json" ] ; cwl:listing [ cwl:entry "import sys\nimport json\nimport re\nimport ast\n\ninputs = json.loads(r'''$(inputs)''')\nwith open('input.json', 'r') as f_stream:\n flagged_fraction_dict_list = json.load(f_stream)\nfilter_station = inputs['filter_station']\nno_station_selected = True\n\nwhile no_station_selected:\n print('Applying station filter ' + str(filter_station))\n flagged_fraction_data = {}\n no_station_selected = False\n for flagged_fraction_dict in flagged_fraction_dict_list:\n entry = ast.literal_eval(flagged_fraction_dict)\n antennas = entry.keys()\n selected_stations = [ station_name for station_name in antennas if re.match(filter_station, station_name) ]\n if len(selected_stations) == 0:\n print('No stations left after filtering. Station(s) do(es) not exist in all subbands. No filter is used.')\n filter_station = ''\n no_station_selected = True\n break\n for antenna in selected_stations:\n try:\n flagged_fraction_data[antenna].append(float(entry[antenna]))\n except KeyError:\n flagged_fraction_data[antenna] = [float(entry[antenna])]\n\nflagged_fraction_list = []\nsorted_stations = sorted(flagged_fraction_data.keys())\n\nflagged_fraction_antenna = {}\n\nfor antenna in sorted_stations:\n flagged_fraction = sum(flagged_fraction_data[antenna]) / len(flagged_fraction_data[antenna])\n flagged_fraction_list.append(flagged_fraction)\n flagged_fraction_antenna[antenna] = flagged_fraction\n try:\n flagged_fraction_data[flagged_fraction].append(antenna)\n except KeyError:\n flagged_fraction_data[flagged_fraction] = [antenna]\n\nmin_flagged_fraction = min(flagged_fraction_list)\nrefant = flagged_fraction_data[min_flagged_fraction][0]\nprint('Selected station ' + str(refant) + ' as reference antenna. Fraction of flagged data is ' + '{:>3}'.format('{:.1f}'.format(100 * min_flagged_fraction) + '%'))\n\nflagged_fraction_antenna['state'] = inputs['state']\n\ncwl_output = {'refant': str(refant)}\ncwl_output['bad_antennas'] = ';'.join([ '!' + station + '*' for station in flagged_fraction_antenna.keys() if flagged_fraction_antenna[station] == 1.0]).rstrip(';')\ncwl_output['filter_out'] = (inputs['filter'] + ';' + cwl_output['bad_antennas']).strip(';')\n\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n\nwith open('./flagged_fraction_antenna.json', 'w') as fp:\n json.dump(flagged_fraction_antenna, fp)\n" ; cwl:entryname "collect_flag_statistics.py" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "collect_flag_statistics_err.log" ; cwl:stdout "collect_flag_statistics.log" . sld:default 1e+15 ; sld:type xsd:float , sld:null . a cwl:CommandLineTool ; rdfs:comment "Find the structure function from phase solutions of core stations.\nWEIGHT: compliant\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('STRUCTURE').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . cwl:source . cwl:source . cwl:source . rdfs:comment "Reference antenna, by default the first." ; sld:type xsd:string , sld:null . rdfs:label "concat_logfiles_dp3concat" ; cwl:in , ; cwl:out ; cwl:run . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . cwl:outputSource ; sld:type xsd:boolean . sld:default false ; sld:type xsd:boolean , sld:null . rdfs:comment "Input solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; sld:default "sol000" ; sld:type xsd:string , sld:null . cwl:source . rdfs:label "H5parm_collector" ; cwl:in , , , ; cwl:out , ; cwl:run . sld:default false ; sld:type xsd:boolean , sld:null . sld:default "sol000/rotation000" . rdfs:comment "Tolerance at which the approximating first stage is considered to be converged and the second full-constraining stage is started." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; sld:type sld:null , xsd:float . rdfs:label "BLsmooth2" ; cwl:in , , , ; cwl:out , ; cwl:run . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . a cwl:CommandLineTool ; rdfs:label "make_mask" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "make_mask.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.image)" ] ] ; cwl:stderr "make_mask.log" ; cwl:stdout "make_mask_err.log" . cwl:source . rdfs:comment "removes all axes with the length of 1" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; sld:default false ; sld:type xsd:boolean . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:type xsd:int , sld:null . cwl:source . sld:default "/tmp" ; sld:type xsd:string , sld:null . sld:type cwl:File . sld:default "CasA_Gaussian" , "CygA_Gaussian" , "TauA_Gaussian" , "VirA_Gaussian" ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . cwl:source . sld:default "pointing" ; sld:type xsd:string , sld:null . sld:type xsd:int , sld:null . sld:default 120 . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).msout)" ; cwl:loadContents true ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . cwl:source . cwl:source . sld:default "filter,flagtransfer,applycal,count" . rdfs:label "structure_function" ; cwl:in , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.soltab.includes(\"phase\") && inputs.execute)" . sld:default 512 . rdfs:comment "Number to normalize to vals = vals * (normVal/valsMean), by default 1." ; sld:type xsd:float , sld:null . rdfs:label "subtract_lowres" ; cwl:in , ; cwl:out , ; cwl:run ; cwl:scatter ( ) . rdfs:label "apply_targ_amp" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run ; cwl:scatter ( ) . rdfs:label "compare_station_list_superterp" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "Reads uvw values (some exotic strategies require these)" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-uvw" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-uvw" ; CommandLineBinding:shellQuote false ] ; sld:type cwl:File , sld:null . sld:default "first" . cwl:outputSource ; sld:type cwl:Directory . cwl:source . sld:default false ; sld:type xsd:boolean , sld:null . sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; sld:type xsd:string . sld:default 10 ; sld:type xsd:int , sld:null . sld:default 1e+02 . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . sld:type xsd:float , sld:null . sld:type xsd:boolean , sld:null . rdfs:comment "Write SRL skymodel" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-s" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . sld:type xsd:boolean , sld:null . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "applyPA.parmdb=$(inputs.solutions.path)" "applybandpass.parmdb=$(inputs.solutions.path)" ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:stderr "DP3_err.log" ; cwl:stdout "DP3.log" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--MS" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "List of directions to calibrate on" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "target" . sld:default 512 . sld:default "DATA" . sld:default "MODEL_DATA" . rdfs:comment "the axis to plot on a page - e.g. ant to get all antenna’s on one file.\n" ; sld:type xsd:string , sld:null . sld:type xsd:string . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count2.savetojson=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . rdfs:comment "File containing or putting the skymodel" ; sld:type cwl:File , sld:null . rdfs:comment "List of h5parm files" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:File . cwl:source . cwl:source ; cwl:valueFrom "$(self+\".reg\")" . sld:default "selfcal_subtract_lowres" . cwl:source . rdfs:comment "Controls the accuracy to be reached." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; sld:default 1e-03 ; sld:type xsd:float , sld:null . sld:default true ; sld:type xsd:boolean , sld:null . rdfs:comment "Input solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; sld:default "sol000" ; sld:type xsd:string , sld:null . sld:default "faraday" ; sld:type xsd:string , sld:null . cwl:source . cwl:source . rdfs:label "apply_gsmcal_final" ; cwl:in , , , , , , , , , , , , , ; cwl:out , , , ; cwl:run ; cwl:scatter ( ) ; cwl:scatterMethod ScatterMethod:dotproduct . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--antennas" ; CommandLineBinding:shellQuote false ] ; sld:default "-1" ; sld:type xsd:string , sld:null . sld:type cwl:File . cwl:in , , , ; cwl:out , ; cwl:run . sld:default "2" . cwl:source . sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "concat_logfiles_unflagged" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . sld:default 8.5e-01 . rdfs:comment "Number of channels in each channel block, for which the solution is assumed to be constant." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; sld:default 1 ; sld:type xsd:int , sld:null . sld:default "Dysco" . cwl:source . cwl:source . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.datause=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.datause=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.datause=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.datause=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.datause=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.datause=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.datause=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . sld:default true . rdfs:comment "Flag unconverged solutions (i.e., those from solves that did not converge\nwithin maxiter iterations).\n" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; sld:default false ; sld:type sld:null , xsd:boolean . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; sld:type cwl:File . sld:default true . sld:default 8 . sld:default 20000 ; sld:type sld:null ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . sld:default true . sld:default true . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . rdfs:comment "Do not add an axis for the source direction" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--do-not-store-direction" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "--demix_sources" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self)" ] ; sld:default false ; sld:type xsd:boolean , xsd:string , sld:null . sld:type cwl:File . sld:type cwl:File , sld:null . rdfs:label "FaradayRot" ; cwl:in , ; cwl:out , ; cwl:run . cwl:source . sld:default "HBA" ; sld:type xsd:string , sld:null . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:prefix "--ylabel" ] ; sld:type xsd:string , sld:null . rdfs:label "concat_logfiles_BLsmooth_model" ; cwl:in , ; cwl:out ; cwl:run . sld:default true . sld:default "time" , "freq" . rdfs:label "losoto_plot_P2" ; cwl:in , , , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . sld:default "fr_rotangle" . sld:type xsd:float , sld:null . rdfs:label "concat_logfiles_losoto_tec2" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . rdfs:comment "verbose output" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; sld:default true ; sld:type xsd:boolean . cwl:source ; cwl:valueFrom "$(self == \"phase\" ? \"phaseonly\" : self)" . sld:type cwl:Directory . cwl:source . rdfs:comment "Use model data from the measurement set." ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--outfile" ] ; sld:default "demix_noise_ratio.png" ; sld:type xsd:string , sld:null . cwl:source . sld:default "sol000/amplitude000" . cwl:pickValue "the_only_non_null" ; cwl:source . cwl:outputSource ; sld:type cwl:File . sld:default "Dysco" . cwl:source . rdfs:comment "Axis along which replicate the values." ; sld:type xsd:string . sld:default "briggs -1.5" . sld:default 20 ; sld:type xsd:int , sld:null . cwl:source ; cwl:valueFrom "$(\"calib_targ_slowtec\"+self)" . sld:default 500 . cwl:source . cwl:source . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:linkMerge "merge_flattened" ; cwl:source . sld:default "MODEL_DATA" . sld:default 10 ; sld:type xsd:float , sld:null . sld:type xsd:int , sld:null . cwl:source . sld:default "selfcal_large" . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 0 ? Math.round(self/4.e6) : 1)" . cwl:source . rdfs:comment "Type of the pipeline" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--run_type" ] ; sld:default "calibrator" ; sld:type xsd:string , sld:null . rdfs:label "concat_logfiles_recreate" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . cwl:source . sld:default -5e-01 , 5e-01 . rdfs:label "concat_logfiles_apply_targ2" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . sld:type cwl:File , sld:null . rdfs:label "concat_logfiles_corrupt" ; cwl:in , ; cwl:out ; cwl:run . cwl:outputSource ; sld:type xsd:float . rdfs:comment "Name of the solset containing the requested soltab to look for" ; cwl:inputBinding [ CommandLineBinding:prefix "--solset=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "sol000" ; sld:type xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean . rdfs:label "write_solutions1" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run . sld:default "ant" . sld:default "tec_" . cwl:source . rdfs:comment "verbose output" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; sld:default true ; sld:type xsd:boolean . sld:default 2000 ; sld:type xsd:int , sld:null . a cwl:CommandLineTool ; rdfs:label "createRMh5parm" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "spinifex" "get_rm_h5parm_from_ms" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.h5parm)" ] ] ; cwl:inputs , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:NetworkAccess ; NetworkAccess:networkAccess true ] ; cwl:stderr "createh5parm_err.log" ; cwl:stdout "createh5parm.log" . rdfs:label "concat_logfiles_identify" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "Region file" ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; sld:type cwl:File , sld:null . sld:default "corrupt_model" . sld:type xsd:string . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msout_name)" ] ; sld:type cwl:Directory . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "echo" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs ; cwl:outputs ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:stdout "input_parms.json" . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source , , . cwl:pickValue "first_non_null" ; cwl:source , . sld:default "spinifex" . rdfs:comment "A MS file containing flagging fraction statistics after clipping." ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename.split(\".\")[0])_count.flagfreq" ] ; sld:type cwl:Directory . sld:default 200 ; sld:type xsd:float , sld:null . cwl:source . rdfs:comment "Save statistics as JSON file" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . sld:default 8e+04 . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory . sld:default "calib_targ_slowtec" . rdfs:comment "Output solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; sld:default "sol000" ; sld:type xsd:string , sld:null . cwl:pickValue "first_non_null" ; cwl:source , . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).demix_timeres)" ; cwl:loadContents true ] ; sld:type xsd:float . cwl:source . cwl:source . cwl:source . a cwl:CommandLineTool ; rdfs:label "blank_image_reg" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "blank_image_reg.py" ) ; cwl:baseCommand ( "blank_image_reg.py" ) ; cwl:baseCommand ( "blank_image_reg.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , ; cwl:outputs , , ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_image)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_image)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_image)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:stderr "blank_image_reg.log" ; cwl:stdout "blank_image_reg_err.log" . cwl:source , ; cwl:valueFrom "$(self.join('')+\"_final\")" . cwl:source ; cwl:valueFrom "$([self])" . sld:default 4 . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; sld:default 2500 ; sld:type sld:null ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . sld:default true ; sld:type xsd:boolean , sld:null . sld:default false ; sld:type xsd:boolean , sld:null . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string , sld:null . sld:default 0 . sld:default "diagonal" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.plotName)" ] ; sld:type cwl:File . cwl:outputSource , ; cwl:pickValue "first_non_null" ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:default true . cwl:source . sld:type cwl:File . sld:default 1.8e+00 . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).maxfreq)" ; cwl:loadContents true ] ; sld:type xsd:float . cwl:source . cwl:source . cwl:source . cwl:source . rdfs:comment "Gives an indication on how the smoothing varies with" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; sld:default 1e+00 ; sld:type xsd:float , sld:null . a cwl:CommandLineTool ; rdfs:label "WSClean" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , , , , ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:stderr "wsclean_err.log" ; cwl:stdout "wsclean.log" . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "groupnames.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).groupnames)" ; cwl:loadContents true ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "DATA" . sld:default 4 ; sld:type xsd:int , sld:null . sld:type xsd:int , sld:null . cwl:source . cwl:source . cwl:source ; cwl:valueFrom "$(self > 25e6 ? 5 : Math.round(self/4.e6) > 1 ? 3 : false)" . rdfs:comment "Filename of output H5Parm" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; sld:default "instrument.h5" ; sld:type xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:shellQuote false ] ; sld:type xsd:string . sld:default "ant" . sld:default true . sld:default "sol000/rotation000" . rdfs:label "merge_array_files" ; cwl:in ; cwl:out ; cwl:run . sld:default "faraday" . sld:default "0deg..15deg" ; sld:type xsd:string , sld:null . cwl:source , , ; cwl:valueFrom "$(self.join(''))" . sld:default "ph_poldif_" . cwl:source . rdfs:comment "Filter these antenna string from the processing." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--filtered_antennas" ] ; sld:default "" ; sld:type xsd:string , sld:null . sld:default 10 ; sld:type xsd:float , sld:null . rdfs:label "compare_station_list_CR" ; cwl:in , ; cwl:out ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--flagfreq_after" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--flagfreq_after" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . cwl:outputSource ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:outputBinding [ CommandOutputBinding:glob "concat*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "concat*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:source . sld:default 30 . rdfs:label "losoto_plot_P" ; cwl:in , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:linkMerge "merge_flattened" ; cwl:source , , . sld:default 4 ; sld:type xsd:int , sld:null . sld:default "sol000/tec000" . sld:default 15 . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; sld:default "sol000" ; sld:type xsd:string . sld:default true ; sld:type xsd:boolean , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).clip_sources)" ; cwl:loadContents true ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . sld:default "apply_targ_slowtec" . sld:type [ sld:items [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type sld:array ] ; sld:type [ sld:items [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type sld:array ] ; sld:type [ sld:items [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type sld:array ] . rdfs:label "merge_array_concat" ; cwl:in ; cwl:out ; cwl:run . sld:default "ampSmooth_" . sld:default "Dysco" . rdfs:comment "Input solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--solsetName" ] ; sld:default "target" ; sld:type xsd:string , sld:null . sld:default 0 ; sld:type xsd:int , sld:null . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:comment "Command with respect to the input task" ; cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(inputs.command+\"'\")" ] ; cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(inputs.command+\"'\")" ] ; sld:type xsd:string . sld:default 20 ; sld:type xsd:int , sld:null . cwl:source . cwl:source . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default 5 . sld:default "sol000/phase000" . sld:default "compareStationList" . sld:default true . rdfs:comment "This sets the maximum allowable fraction of flagged solutions above\nwhich the entire station is flagged.\n" ; sld:type xsd:float , sld:null . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . sld:default 8.5e-01 . sld:default 30 . sld:type cwl:File ; sld:type [ sld:items cwl:Directory , cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory , cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory , cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory , cwl:File ; sld:type sld:array ] . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:comment "Return the ratio instead of subtracting." ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "sol000/rotationResid000" . sld:default "48.82kHz" ; sld:type xsd:string , sld:null . rdfs:comment "solset in which IONEX solution are put" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--solset-name" ] ; sld:default "sol000" ; sld:type xsd:string , sld:null . rdfs:label "BLsmooth_model" ; cwl:in , , , , ; cwl:out , ; cwl:run . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . sld:type cwl:File , sld:null . sld:default 1e+07 ; sld:type xsd:float , sld:null . cwl:source . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . cwl:pickValue "first_non_null" ; cwl:source , . cwl:source . sld:default 6000 . rdfs:comment "Unwrap phases." ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "get_targetname" ; cwl:in ; cwl:out , ; cwl:run . cwl:source . sld:default "ant" . cwl:source , , , ; cwl:valueFrom "$([self[0],self[1],self[2]*Math.round(195.3125 / parseFloat(self[3]))])" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , xsd:string , sld:null . cwl:source . sld:default "97.64kHz" ; sld:type xsd:string , sld:null . rdfs:label "subtract_hires" ; cwl:in , ; cwl:out , ; cwl:run ; cwl:scatter ( ) . sld:default "fr_rotangle-res" . cwl:source . sld:default "200arcsec" . cwl:pickValue "the_only_non_null" ; cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "make_mask*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . sld:default true . cwl:source . cwl:in , , ; cwl:out , ; cwl:run . cwl:source . rdfs:label "concat_logfiles_predict" ; cwl:in , ; cwl:out ; cwl:run . sld:default false . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filename)" ; cwl:loadContents true ] ; sld:type xsd:string . sld:default "merge_skymodels" . rdfs:label "findRefAnt" ; cwl:in , ; cwl:out , ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:float , xsd:boolean . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:in ; cwl:out ; cwl:run . cwl:source . cwl:in , , ; cwl:out , ; cwl:run . cwl:source . cwl:source . cwl:source . a cwl:ExpressionTool ; rdfs:label "merge_array_files" ; ns1:original_cwlVersion "v1.2" ; ExpressionTool:expression "${\n var out_file = []\n for(var i=0; i ; cwl:outputs ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] . rdfs:label "write_solutions" ; cwl:in , , , , , , , ; cwl:out , ; cwl:run . cwl:outputSource ; sld:type cwl:File . sld:default "target" . sld:default "sol000/phase000" . rdfs:label "finalize" ; cwl:in , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , , , , ; cwl:run . cwl:source . rdfs:comment "Output table name. By default choose next available from table type." ; sld:type xsd:string , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).demix_freqres)" ; cwl:loadContents true ] ; sld:type xsd:string . cwl:source . cwl:source ; cwl:valueFrom "$(\"BLsmooth_model\"+self)" . sld:type xsd:string . rdfs:comment "Output image" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_image_name)" ] ; sld:type cwl:File . cwl:source . sld:default 5 . sld:default true . cwl:source . cwl:source . sld:default 8e-01 . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--structure_file" ] ; sld:default false ; sld:type xsd:boolean , cwl:File , sld:null . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "A list of lists specifying groups of antennas that are to be constrained to have the same solution." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:label "concat_logfiles_apply_amp_2" ; cwl:in , ; cwl:out ; cwl:run . sld:type xsd:float , sld:null . sld:default "pol" . sld:default 8 ; sld:type xsd:int , sld:null . rdfs:comment "Input Measurement Set string (including dummy.ms)" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . sld:default 10 ; sld:type xsd:int , sld:null . cwl:source . rdfs:comment "Maximum number of iterations during approximating stage" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . sld:default 5e+06 . cwl:outputSource ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; sld:default true ; sld:type xsd:boolean , sld:null . rdfs:label "losoto_plot_gsm_Pd2" ; cwl:in , , , , , , , , , ; cwl:out , , ; cwl:run . cwl:source . sld:type xsd:int , sld:null . rdfs:comment "Kernel size in Hz" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type xsd:float , sld:null . rdfs:comment "Name of the output file" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--output_fname" ] ; sld:default false ; sld:type xsd:boolean , xsd:string , sld:null . sld:default "sol000/amplitudeSmooth" . cwl:source . rdfs:comment "Make a movie summing up all the produced plots.\n" ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . rdfs:comment "Name of output MS" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; sld:default "." ; sld:type xsd:string . cwl:source . cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . sld:default "calib_targ_fr" . cwl:inputBinding [ CommandLineBinding:prefix "count2.jsonfilename=" ; CommandLineBinding:separate false ] ; sld:default "out2.json" ; sld:type xsd:string , sld:null . rdfs:comment "If True, skip flagging of international LOFAR stations (only used if\n telescope = 'lofar')\n" ; sld:type xsd:boolean , sld:null . rdfs:comment "Name of the pipeline" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--pipeline" ] ; sld:default "LINC" ; sld:type xsd:string , sld:null . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[avg]" "msin.orderms=False" "avg.type=average" ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:stderr "average_err.log" ; cwl:stdout "average.log" . sld:default "set CORRECTED_DATA = DATA - MODEL_DATA" . cwl:source . cwl:source . rdfs:comment "Append the solutions to an existing h5parm file" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default true . sld:default "calibrator" . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "demix_solutions" ] ; sld:type cwl:Directory , sld:null . sld:default 5e-01 ; sld:type xsd:float , sld:null . cwl:source . sld:type xsd:string , sld:null . rdfs:comment "Keep duplicate components from model 1 or model 2" ; cwl:inputBinding [ CommandLineBinding:prefix "--keep=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "from2" ; sld:type xsd:string , sld:null . cwl:source . sld:default 5.4e+07 . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "Number of cpus, by default all available." ; sld:type xsd:int , sld:null . cwl:source . sld:default 8e+04 . sld:default "calib_targ_faraday" . sld:default "CasA_Gaussian" , "CygA_Gaussian" , "TauA_Gaussian" , "VirA_Gaussian" ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . sld:type [ sld:items xsd:string ; sld:type sld:array ] . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[predict,count]" "msout=." ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "predict_cal_err.log" ; cwl:stdout "predict_cal.log" . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . rdfs:label "merge_array_files" ; cwl:in ; cwl:out ; cwl:run . cwl:source . sld:default 5e-01 ; sld:type xsd:float , sld:null . cwl:source . sld:default "time" . sld:type cwl:File , sld:null . sld:default true . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . sld:default 2 . sld:default "sol000/rotationResid000" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:int , sld:null , xsd:boolean . cwl:source . sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "pass_file_sourcelist" ; cwl:in ; cwl:out ; cwl:run . rdfs:comment "Output MS" ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:default "TGSS" ; sld:type xsd:string , sld:null . cwl:source . sld:default 0 ; sld:type xsd:int , sld:null . cwl:source . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default false . sld:default true . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "sort_times_into_freqGroups.log" ] ; sld:type cwl:File . rdfs:comment "A MS file containing flagging fraction statistics before clipping." ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename.split(\".\")[0])_count1.flagfreq" ] ; sld:type cwl:Directory . cwl:source . sld:default 1e+03 . sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default 2000 ; sld:type xsd:int , sld:null . cwl:source . sld:default false ; sld:type xsd:boolean , sld:null . sld:default "Dysco" . sld:default false ; sld:type xsd:boolean , sld:null . sld:default "ant" . sld:default "pol" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "average.timeresolution=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "average.timeresolution=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default 1 ; sld:type xsd:int , sld:null . a cwl:CommandLineTool ; rdfs:label "pass_file" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "echo" ) ; cwl:baseCommand ( "echo" ) ; cwl:baseCommand ( "echo" ) ; cwl:baseCommand ( "echo" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs ; cwl:outputs . cwl:inputBinding [ cwl:valueFrom "$(self ? 1 : 0)" ] ; sld:type xsd:boolean , sld:null . sld:default 16 ; sld:type xsd:int , sld:null . cwl:source . sld:default 0e+00 . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename2)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; sld:type xsd:string . sld:default "time" . sld:default "spinifex" . cwl:outputSource ; sld:type cwl:File . rdfs:comment "Output Measurement Set" ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string , sld:null . rdfs:comment "Output logfile" ; cwl:outputBinding [ CommandOutputBinding:glob "taql*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$(\"calib_targ_fasttec\"+self)" . cwl:source . cwl:outputSource ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Soltab to export station flags to. Note: exported flags are not time- or\nfrequency-dependent.\n" ; sld:type xsd:string , sld:null . sld:default "SMOOTHED_DATA" . cwl:inputBinding [ CommandLineBinding:prefix "msout.writefullresflag=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . sld:default "ant" . cwl:source . rdfs:label "check_unflagged_fraction" ; cwl:in , ; cwl:out , , , , ; cwl:run ; cwl:scatter ( ) . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).frequency)" ; cwl:loadContents true ] ; sld:type xsd:float . sld:type cwl:File . cwl:source . rdfs:comment "Initialize solver with the solutions of the previous time slot" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null , xsd:int . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:comment "Maximum number of iterations during approximating stage" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; sld:type sld:null , xsd:int . sld:default "wsclean" . sld:default 0 . sld:default 512 . sld:type xsd:int , sld:null . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--Ateam_separation_file" ] ; sld:default false ; sld:type xsd:boolean , cwl:File , sld:null . rdfs:comment "MS to sort" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "Input Measurement Set(s)" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; sld:default "sol000" ; sld:type xsd:string . sld:default 5e-01 . sld:default true . sld:default true . rdfs:comment "An optional reference frequency (in Hz) for the smoothness constraint" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type xsd:float , sld:null . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "clipper.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . cwl:source . cwl:source . sld:default "MODEL_DATA" . rdfs:comment "normalization is done in logspace" ; sld:type xsd:boolean , sld:null . sld:default "ph_" . rdfs:comment "Type of operation to be performed on clipped data.\n" ; cwl:inputBinding [ CommandLineBinding:prefix "clipper.operation=" ; CommandLineBinding:separate false ] ; sld:type [ sld:symbols ; sld:type sld:enum ] . rdfs:label "save_inspection" ; cwl:in , , ; cwl:out ; cwl:run . cwl:source ; cwl:valueFrom "$(\"apply_targ_slowtec\"+self)" . sld:type cwl:Directory . sld:default "calib_targ_fasttec" . sld:default "[CS001LBA,CS002LBA,CS003LBA,CS004LBA,CS005LBA,CS006LBA,CS007LBA]" . cwl:source . cwl:inputBinding [ CommandLineBinding:position 2 ] ; cwl:inputBinding [ CommandLineBinding:position 2 ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:label "losoto_plot_gsm_P" ; cwl:in , , , , , , , ; cwl:out , , ; cwl:run . rdfs:label "prep" ; cwl:in , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , , , , , , , , , , , , , , , , , , , ; cwl:run . rdfs:label "image_target" ; cwl:in , , , , , , , , , , , , , , , , , , , ; cwl:out , , , , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.rotationdiagonalmode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.rotationdiagonalmode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.rotationdiagonalmode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.rotationdiagonalmode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.rotationdiagonalmode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.rotationdiagonalmode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.rotationdiagonalmode=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . sld:type xsd:int , sld:null . rdfs:label "concat_logfiles_apply_targ" ; cwl:in , ; cwl:out ; cwl:run . cwl:source ; cwl:valueFrom "$(\"losoto_slowtec\"+self)" . sld:default false ; sld:type xsd:boolean , sld:null . sld:default true . cwl:source ; cwl:valueFrom "$(self+\"_hires\")" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.overwrite=True" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean . cwl:source . sld:default -3.14e+00 , 3.14e+00 . cwl:source . rdfs:label "apply_targ1" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . a cwl:CommandLineTool ; rdfs:label "uvplot" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "plot_uvcov.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "uvplot_err.log" ; cwl:stdout "uvplot.log" . rdfs:comment "Name of the pointing" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--pointing" ] ; sld:default "POINTING" ; sld:type xsd:string , sld:null . sld:default "target" . sld:default 4 ; sld:type xsd:int , sld:null . cwl:source . cwl:source , , ; cwl:valueFrom "$([self[0],self[1],self[2]])" . sld:default "30arcsec" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "pointing" ; sld:type xsd:string , sld:null . cwl:source . sld:default "selfcal_predict" . rdfs:comment "Output image" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outputimage)" ] ; sld:type cwl:File . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default true . sld:default 300 . cwl:source . cwl:outputSource ; sld:type cwl:Directory . sld:type xsd:int , sld:null . sld:default 6 . cwl:source ; cwl:valueFrom "$(self+\"_large\")" . rdfs:label "blank_image_reg_1" ; cwl:in , , , ; cwl:out , , ; cwl:run . sld:default 2e+02 ; sld:type xsd:float , sld:null . sld:default true . sld:default 0 . cwl:source ; cwl:valueFrom "$([self])" . cwl:outputSource ; sld:type cwl:Directory . sld:type xsd:string , sld:null . cwl:source . cwl:source ; cwl:valueFrom "$(self+'.skymodel')" . cwl:source . cwl:outputSource ; cwl:pickValue "the_only_non_null" ; sld:type cwl:File . sld:default true . cwl:source . cwl:source . rdfs:comment "Input image" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:File . cwl:source . rdfs:comment "Output data column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; sld:type xsd:string . sld:default "pointing" ; sld:type xsd:string , sld:null . sld:default true . cwl:outputSource ; sld:type cwl:Directory . cwl:outputSource , ; cwl:pickValue "first_non_null" ; sld:type cwl:Directory . rdfs:comment "Min max value for the independent variable (0 means automatic).\n" ; sld:type sld:null ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] . sld:default true . sld:default true . cwl:source . sld:type cwl:File . rdfs:label "concat_logfiles_calib_targ1" ; cwl:in , ; cwl:out ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "uvplot*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:label "losoto_plot_ampSmooth" ; cwl:in , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "losoto_plot_fr" ; cwl:in , , , , , ; cwl:out , , ; cwl:run . sld:type xsd:float , sld:null . cwl:source . cwl:source . cwl:source ; cwl:valueFrom "$(self+\"amplitude\")" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; sld:type xsd:boolean , sld:null . sld:default true . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.overwrite=True" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.overwrite=True" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:source . cwl:source ; cwl:valueFrom "$(Math.round(self/1e7) > 1)" . sld:default true . rdfs:comment "Use model data from the measurement set." ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . cwl:source . rdfs:comment "Controls the accuracy to be reached." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; sld:default 1e-03 ; sld:type sld:null , xsd:float . cwl:inputBinding [ CommandLineBinding:position 1 ] ; sld:type cwl:File . sld:default "identifyBadAntennas" . sld:default true . cwl:source . sld:default 1e-03 . rdfs:comment "Title of the plots" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--title" ; CommandLineBinding:shellQuote false ] ; sld:default "uv-coverage" ; sld:type xsd:string , sld:null . sld:default "losoto_FR_targ" . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "output table name (same solset)" ; sld:type xsd:string , sld:null . rdfs:comment "The axis to plot in different colours - e.g. pol to get correlations with\n different colors.\n" ; sld:type xsd:string , sld:null . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source , , , , , . sld:default "dp3concat" . cwl:source . cwl:source . rdfs:comment "maximum amount of threads to be used for processing" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . cwl:source . sld:type xsd:int , sld:null . sld:default 5e-01 ; sld:type xsd:float , sld:null . sld:default true . sld:type xsd:string . cwl:outputSource ; sld:type xsd:string . sld:default "sol000/phase000" . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 1)" . sld:default "final" . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . sld:default true . cwl:source . cwl:source . sld:default "resid" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; sld:type sld:null , xsd:float . sld:default true ; sld:type xsd:boolean , sld:null . sld:type xsd:string , sld:null . sld:default "ant" . sld:default "time" , "freq" . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--timeslots" ; CommandLineBinding:shellQuote false ] ; sld:default "0,10,0" ; sld:type xsd:string , sld:null . sld:default 20 ; sld:type xsd:int , sld:null . rdfs:comment "Adaprtive threshold" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-a" ] ; sld:default 50 ; sld:type xsd:int , sld:null . rdfs:comment "Solution table" ; sld:type xsd:string . rdfs:label "make_parset" ; cwl:in , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:out ; cwl:run . cwl:source . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "list of flagged antennas per MS" ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . cwl:pickValue "first_non_null" ; cwl:source , . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename1)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; sld:type xsd:string . sld:default "CORRECTED_DATA" . cwl:pickValue "first_non_null" ; cwl:source , . sld:default "MODEL_DATA" . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ] ; sld:type cwl:Directory . sld:type xsd:boolean , sld:null . cwl:source . sld:default "fr" . cwl:outputSource ; sld:type cwl:File . cwl:source . sld:type cwl:File . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "ddecal_err.log" ; cwl:stdout "ddecal.log" . cwl:source . cwl:source . cwl:source . rdfs:comment "Size of the image [x,y], if one of the values is 0, then it is\nautomatically chosen. By default automatic set.\n" ; sld:default 0 ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . sld:default "pointing" ; sld:type xsd:string , sld:null . cwl:source . sld:default "briggs -0.3" . sld:default "dp3concat" . rdfs:label "concat_logfiles_subtract" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; sld:type cwl:File , sld:null . cwl:source ; cwl:valueFrom "$(self.replaceAll(';',';!'))" . sld:default "48.82kHz" ; sld:type xsd:string , sld:null . cwl:source . cwl:source . cwl:source . sld:type cwl:File . sld:type xsd:boolean , sld:null . cwl:outputSource ; cwl:pickValue "the_only_non_null" ; sld:type cwl:File . rdfs:comment "Input Measurement Set string (including dummy.ms)" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "" . cwl:outputBinding [ CommandOutputBinding:glob "compareStationList*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "compareStationList*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "compareStationList*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "compareStationList*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "compareStationList*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:type xsd:int , sld:null . sld:type xsd:int , sld:null . sld:default 1e-03 . sld:default 20000 ; sld:type sld:null ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).refant)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).refant)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).refant)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).refant)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).refant)" ; cwl:loadContents true ] ; sld:type xsd:string . cwl:outputSource ; sld:type xsd:string . sld:default "amplitudeSmooth" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "DATA" ; sld:type xsd:string , sld:null . sld:default "dp3_prep_targ" . cwl:outputSource ; sld:type cwl:File . rdfs:comment "Output MS" ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . sld:default "[CS001LBA,CS002LBA,CS003LBA,CS004LBA,CS005LBA,CS006LBA,CS007LBA,CS011LBA,CS013LBA,CS017LBA,CS021LBA,CS024LBA,CS026LBA,CS028LBA,CS030LBA,CS031LBA,CS032LBA,CS101LBA,CS103LBA,CS201LBA,CS301LBA,CS302LBA,CS401LBA,CS501LBA]" . rdfs:comment "Flag only the unconverged solutions for which divergence was detected.\nAt the moment, this option is effective only for rotation+diagonal\nsolves, where divergence is detected when the amplitudes of any station\nare found to be more than a factor of 5 from the mean amplitude over all\nstations.\nIf divergence for any one station is detected, all stations are flagged\nfor that solution interval. Only effective when flagunconverged=true\nand mode=rotation+diagonal.\n" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . sld:default "30arcsec" . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . sld:default "ant" . cwl:source . sld:type xsd:boolean , sld:null . cwl:source . rdfs:label "recreate_model" ; cwl:in , , , , , , , ; cwl:out , ; cwl:run . cwl:outputSource ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:default "DATA" . sld:default "CS001HBA0" ; sld:type xsd:string , sld:null . cwl:source . rdfs:comment "Will read the entire measurement set in memory. This is the fastest,\nbut requires much memory.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-memory-read" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-memory-read" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:boolean , sld:null . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default 200 ; sld:type xsd:float , sld:null . sld:default "tec" . cwl:outputSource ; sld:type cwl:Directory , sld:null . cwl:source . rdfs:label "write_solutions2" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . sld:default "48.82kHz" ; sld:type xsd:string , sld:null . cwl:source . sld:default 1 . sld:type xsd:int , sld:null . rdfs:comment "Input main task name" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "'" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "'" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "UPDATE" ; sld:type xsd:string , sld:null . rdfs:comment "reverse final combined mask" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--inverse" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--inverse" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--inverse" ] ; sld:type xsd:int , sld:null . rdfs:comment "Save statistics as JSON file" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . rdfs:comment "Stepsize between iterations" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; sld:default 2e-01 ; sld:type sld:null , xsd:float . rdfs:label "dp3concat" ; cwl:in , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run . sld:default true . sld:default -3.14e+00 , 3.14e+00 . rdfs:label "uvplot" ; cwl:in , , , , ; cwl:out , ; cwl:run . sld:default 1 ; sld:type xsd:int , sld:null . rdfs:label "losoto_plot_Rot3" ; cwl:in , , , , , , , ; cwl:out , , ; cwl:run . cwl:in , , , , , , , ; cwl:out , , , ; cwl:run ; cwl:scatter ( ) . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[$(inputs.steps)]" "msin.orderms=False" ) ; cwl:arguments ( "steps=[$(inputs.steps)]" "msin.orderms=False" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:hints [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:stderr "concat_err.log" ; cwl:stdout "concat.log" . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applyRM.parmdb=" ; CommandLineBinding:separate false ; cwl:valueFrom "$(inputs.solutions.path)" ] ; sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . sld:default 8.5e-01 . cwl:source . rdfs:label "filter_ms_group" ; cwl:in , , ; cwl:out , ; cwl:run . sld:default "CORRECTED_DATA" . cwl:source . rdfs:label "imaging_subtract" ; cwl:in , , , , , , , , , , , , ; cwl:out , , , ; cwl:run . cwl:source . cwl:source . a cwl:CommandLineTool ; rdfs:label "h5parm_cat" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:stderr "h5parm_collector_output_err.log" ; cwl:stdout "h5parm_collector_output.log" . sld:type cwl:File , sld:null . sld:default true ; sld:type xsd:boolean , sld:null . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . cwl:source . cwl:source . cwl:source . rdfs:comment "Input main task name" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "'" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "UPDATE" ; sld:type xsd:string , sld:null . cwl:source . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . sld:default "amp_" . cwl:source ; cwl:valueFrom "$(self.join(','))" . cwl:source . rdfs:label "predict_targ" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . sld:default 50 ; sld:type xsd:float , sld:null . sld:type xsd:string , sld:null . sld:default 20000 . rdfs:label "linc_target" ; cwl:in , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , , , , ; cwl:run . cwl:source . sld:default "array_factor" . sld:default "CORRECTED_DATA" . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . cwl:source . sld:default "target/faraday" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean . rdfs:comment "Input data Column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "DATA" ; sld:type xsd:string . cwl:source . sld:default true . sld:default "DATA" . rdfs:label "concat_logfiles_applygsm" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . rdfs:label "initial_flags_join" ; cwl:in , , ; cwl:out , ; cwl:run . sld:default 1.9e+08 ; sld:type xsd:float , sld:null . rdfs:comment "maximum amount of threads to be used for processing" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . sld:default "" ; sld:type xsd:string , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "DP3.parset" ] ; sld:type cwl:File . cwl:source . rdfs:comment "Input data Column" ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "DATA" ; sld:type xsd:string , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "input_parms.json" ] ; sld:type cwl:File . rdfs:comment "This sets the number of standard deviations considered when outlier\n clipping is done.\n" ; sld:type xsd:float , sld:null . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory . sld:default "apply_gsmcal_final" . sld:default 0 ; sld:type xsd:int , sld:null . sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "List of h5parm files" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:File . rdfs:comment "When unequal to 0, all stations within the given distance from the reference station (0) will be constrained to have the same solution (in metres)" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type xsd:float , sld:null . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "filter.remove=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:linkMerge "merge_flattened" ; cwl:source . sld:type cwl:File , xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean , xsd:string . cwl:source ; cwl:valueFrom "$(self+\"_tmp\")" . sld:default true . sld:default "time" , "freq" . cwl:source . rdfs:label "remove baseline syntax characters and convert it to a list" ; cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . rdfs:label "concat_logfiles_solutions" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter)" ; cwl:loadContents true ] ; sld:type xsd:string . rdfs:comment "timestep in seconds for which independent model calculations are done" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--timestep" ] ; sld:default 30 ; sld:type xsd:int , sld:null . rdfs:label "concat_logfiles_uvplot" ; cwl:in , ; cwl:out ; cwl:run . rdfs:label "h5parm_pointingname" ; cwl:in , , ; cwl:out , ; cwl:run . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; sld:default 0 ; sld:type xsd:int , sld:null . cwl:source . sld:type cwl:File . cwl:source . a cwl:Workflow ; rdfs:label "predict_calibrate_fr" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , ; cwl:outputs , , , , ; cwl:requirements [ a cwl:StepInputExpressionRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null , xsd:float . sld:type cwl:File . sld:default 1e+15 ; sld:type xsd:float , sld:null . rdfs:label "concat_logfiles_structure" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.file_prefix.includes(\"phase\") && inputs.execute)" . cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default 10 ; sld:type xsd:int , sld:null . rdfs:comment "Output h5parm name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; sld:default "output.h5" ; sld:type xsd:string . sld:default "rotationResid000" . sld:default 1.5e+00 . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . sld:default true ; sld:type xsd:boolean , sld:null . cwl:outputSource ; sld:type cwl:File . cwl:source . rdfs:comment "Input filter string for DP3 to get newly detected flagged antennas attached to" ; sld:default "" ; sld:type xsd:string , sld:null . sld:default "losoto_gsmcal_final" . sld:default 0 . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "CORRECTED_DATA" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . cwl:source ; cwl:valueFrom "$(self > 25e6 ? 5 : Math.round(self/4.e6) > 1 ? 3 : false)" . cwl:source . cwl:source . sld:default "logs" . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applytec.parmdb=" ; CommandLineBinding:separate false ; cwl:valueFrom "$(inputs.solutions.path)" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . a cwl:CommandLineTool ; rdfs:comment "This operation for LoSoTo implements basic plotting WEIGHT:\n flag-only compliant, no need for weight\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . rdfs:comment "MS set output" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . cwl:outputSource ; cwl:pickValue "the_only_non_null" ; sld:type cwl:File . sld:default "target" . cwl:source . sld:default "time" . cwl:source . cwl:source . sld:default true . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:comment "Mask name (default=imagename with mask in place of image)" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-m" ] ; sld:type xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; sld:default "out.json" ; sld:type xsd:string , sld:null . sld:type xsd:int , sld:null . sld:default "$LINC_DATA_ROOT/rfistrategies/lofar-hba-wideband.lua" ; sld:type cwl:File , xsd:string , sld:null . cwl:source . cwl:source . sld:default "sol000" . cwl:source ; cwl:valueFrom "$(\"apply_targ_fasttec\"+self)" . sld:default true . sld:default "uvplot" . sld:type cwl:Directory . cwl:source . sld:default "sol000/amplitude000" . sld:default "apply_and_concat_hires" . cwl:source . sld:default "TGSS" ; sld:type xsd:string , sld:null . rdfs:label "concat_logfiles_lowres" ; cwl:in , ; cwl:out ; cwl:run . cwl:source ; cwl:valueFrom "$(\"losoto_fasttec\"+self)" . cwl:outputSource ; sld:type cwl:File . rdfs:comment "This must be a len=2 axis and the plot will have the differential value\n- e.g. ‘pol’ to plot XX-YY.\n" ; sld:type xsd:string , sld:null . sld:type xsd:boolean , sld:null . sld:default 10 ; sld:type xsd:int , sld:null . sld:default true . cwl:source . sld:default true . cwl:source . sld:type xsd:boolean , sld:null . cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . sld:default "DATA" . rdfs:comment "Labels of the skymodel patches to\nuse to simulate visibilities.\n" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "clipper.sources=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "A-Team clipping fraction [%]" . sld:default "phase" ; sld:type xsd:string , sld:null . rdfs:comment "Output solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; sld:default "sol000" ; sld:type xsd:string , sld:null . cwl:source . sld:default "180arcsec" . cwl:source . sld:default 512 . sld:default 50 . sld:type cwl:File , sld:null . cwl:source ; cwl:valueFrom "$(self ? \"True\" : \"False\")" . cwl:pickValue "the_only_non_null" ; cwl:source . sld:default "CasA_Gaussian" , "CygA_Gaussian" , "TauA_Gaussian" , "VirA_Gaussian" ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean , xsd:int . cwl:source . sld:default "CasA_Gaussian" , "CygA_Gaussian" , "TauA_Gaussian" , "VirA_Gaussian" ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "tec" ; sld:type xsd:string , sld:null . cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(\"ph_\"+self+\"_\")" . sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "average.freqresolution=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "average.freqresolution=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "12.205kHz" ; sld:type xsd:string , sld:null . sld:default true . rdfs:comment "Size of the markers in the 2D plot. By default 2.\n" ; sld:default 2 ; sld:type xsd:int , sld:null . cwl:source , ; cwl:valueFrom "$(self[0] + '_' + self[1])" . rdfs:label "losoto_plot_phase" ; cwl:in , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . rdfs:label "concat_logfiles_aoflag" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . sld:default true . sld:default true . rdfs:comment "Do not backup the old WEIGHT_SPECTRUM in WEIGHT_SPECTRUM_ORIG" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; sld:default false ; sld:type sld:null , xsd:boolean . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:type xsd:int , sld:null . sld:type xsd:int , sld:null . sld:type xsd:int , sld:null . cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; sld:default "out.json" ; sld:type xsd:string , sld:null . rdfs:label "merge_array_files" ; cwl:in ; cwl:out ; cwl:run . rdfs:label "concat_logfiles_apply_amp_2" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . sld:default 0 . sld:default "dp3" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "LBA" ; sld:type xsd:string , sld:null . cwl:source . sld:default true . rdfs:comment "The number of threads per DP3 process." ; cwl:inputBinding [ CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . rdfs:label "concat_logfiles_losoto_amp" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source , ; cwl:valueFrom "$('target/'+self.join('')+\"_final\")" . cwl:outputSource ; sld:type cwl:File . rdfs:comment "initial filter baseline statement given as user input" ; sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . sld:default "tec" ; sld:type xsd:string , sld:null . rdfs:label "image_large" ; cwl:in , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run . rdfs:comment "Specified in arcseconds, and if non-zero, sources that are near each other are clustered\nand the beam is only calculated for each cluster.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "clipper.beamproximitylimit=" ; CommandLineBinding:separate false ] ; sld:default 2000 ; sld:type xsd:int , sld:null . a cwl:Workflow ; rdfs:label "selfcal_target" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , , , ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] . cwl:source . rdfs:label "BLsmooth" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run . a cwl:Workflow ; rdfs:label "apply_calibrate_tec" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , ; cwl:outputs , , , , , , , , , , , . cwl:source ; cwl:valueFrom "$(Math.round(self/2.e6) > 1)" . sld:default "TGSS" ; sld:type xsd:string , sld:null . rdfs:comment "Number of threads DP3 is allowed to use." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type sld:null , xsd:int . sld:default "*&" ; sld:type xsd:string , sld:null . rdfs:label "aoflag" ; cwl:in , , , , , ; cwl:out , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; sld:type xsd:string . cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . sld:default "selfcal_subtract_hires" . cwl:outputSource ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . sld:default true . rdfs:label "pass_file_model_hires" ; cwl:in ; cwl:out ; cwl:run . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; sld:default 0 ; sld:type xsd:int , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "BLsmooth_model" . rdfs:comment "Will skip an ms if it has already been processed by AOFlagger according\nto its HISTORY table.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-skip-flagged" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-skip-flagged" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:boolean , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "find_flagged_antennas*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "/tmp" ; sld:type xsd:string , sld:null . sld:type xsd:int , sld:null . sld:default 20 ; sld:type xsd:int , sld:null . rdfs:comment "Save the newly computed WEIGHT_SPECTRUM, this action permanently modify the MS!" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; sld:default false ; sld:type sld:null , xsd:boolean . rdfs:comment "Uses an approximation stage in which the phases are constrained with the piece-wise fitter, to solve local minima problems." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . sld:type cwl:File . cwl:source . rdfs:comment "Number of columns in a multi-table image. By default is automatically\nchosen.\n" ; sld:type xsd:int , sld:null . sld:default "CS00.*" ; sld:type xsd:string , sld:null . sld:default "[RS208LBA,RS210LBA,RS307LBA,RS310LBA,RS406LBA,RS407LBA,RS409LBA,RS508LBA,RS509LBA]" . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . cwl:source , ; cwl:valueFrom "$(\"slow\"+self.join('')+\"_\")" . sld:default true . rdfs:comment "Input data Column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "DATA" ; sld:type xsd:string , sld:null . cwl:source . cwl:outputSource ; sld:type xsd:string . sld:default "GSM" ; sld:type xsd:string , sld:null . cwl:outputSource , ; cwl:pickValue "first_non_null" ; sld:type cwl:File . sld:default "ant" . cwl:outputSource ; sld:type cwl:File . rdfs:comment "Diameter of the beam" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--pbcut" ] ; sld:type xsd:float , sld:null . rdfs:comment "Output region file name" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--outfile" ] ; sld:type xsd:string . cwl:outputSource ; sld:type cwl:Directory , cwl:File . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:comment "Output file name" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--outfile" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--outfile" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--outfile" ] ; sld:type xsd:string , sld:null . sld:default "ant" . sld:default 1 . sld:default true . cwl:source . cwl:source . sld:default "faraday" . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . a cwl:Workflow ; rdfs:label "finalize" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , , , ; cwl:requirements [ a cwl:StepInputExpressionRequirement ] ; cwl:requirements [ a cwl:MultipleInputFeatureRequirement ] ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] . cwl:linkMerge "merge_flattened" ; cwl:source , , , , , . sld:default 8.5e-01 . cwl:source , ; cwl:valueFrom "$(\"apply_targ_\"+self.join(''))" . sld:default "target" . cwl:outputSource , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:label "concat_logfiles_self_calibrate" ; cwl:in , ; cwl:out ; cwl:run . sld:default true ; sld:type xsd:boolean , sld:null . sld:default "Dysco" . cwl:source . cwl:source ; cwl:valueFrom "$([self])" . sld:default true . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "average*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Define output file name for JSON statistics" ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; sld:default "out.json" ; sld:type xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string . sld:default "48.82kHz" ; sld:type xsd:string , sld:null . cwl:source . sld:default "time" . rdfs:label "concat_logfiles_apply_targ1" ; cwl:in , ; cwl:out ; cwl:run . sld:type cwl:File . sld:default 5e-01 . cwl:linkMerge "merge_flattened" ; cwl:source . sld:type xsd:string , sld:null . sld:default "sol000" . rdfs:label "corrupt_slowtec" ; cwl:in , , , , , , , , , , ; cwl:out , ; cwl:run . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . sld:default ".dp3concat" . rdfs:comment "Initialize solver with the solutions of the previous time slot" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(self+'000')" . cwl:source . rdfs:label "H5parm_collector_amp" ; cwl:in , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.usebeammodel=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default true . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source . a cwl:CommandLineTool ; rdfs:comment "This operation for LoSoTo implements a station-flagging procedure. Flags are time-independent.\nWEIGHT: compliant\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('FLAGSTATION').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . rdfs:comment "Type of constraint to apply. Options are\n" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "--removed_bands" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self)" ] ; sld:default false ; sld:type xsd:boolean , xsd:string , sld:null . rdfs:label "dp3_prep_target" ; cwl:in , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , , , , , , ; cwl:run ; cwl:scatter ( ) . rdfs:label "calib_targ" ; cwl:in , , , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run . sld:default "self_calibrate_target" . cwl:source . sld:default true . rdfs:label "pass_file_sourcelist" ; cwl:in ; cwl:out ; cwl:run . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:outputSource ; sld:type xsd:float . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:comment "Solution table" ; sld:type xsd:string . sld:default "Ateamclipper.png" . sld:default 1 ; sld:type xsd:int , sld:null . cwl:pickValue "the_only_non_null" ; cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "flagtransfer.baseline=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote true ; cwl:valueFrom "$(self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "flagtransfer.baseline=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote true ; cwl:valueFrom "$(self)" ] ; sld:type xsd:string , sld:null . cwl:source . cwl:source . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "python3" "sort_times.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , ; cwl:outputs , , , , , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "import sys\nimport json\nfrom sort_times_into_freqGroups import main as sort_times_into_freqGroups\n\nmss = sys.argv[1:]\ninputs = json.loads(r'''$(inputs)''')\n\nnumbands = inputs['numbands']\nstepname = inputs['stepname']\nDP3fill = inputs['DP3fill']\nmergeLastGroup = inputs['mergeLastGroup']\ntruncateLastSBs = inputs['truncateLastSBs']\nfirstSB = inputs['firstSB']\n\noutput = sort_times_into_freqGroups(mss, numbands, DP3fill, stepname, mergeLastGroup, truncateLastSBs, firstSB)\n\nfilenames = output['filenames']\ngroupnames = output['groupnames']\ntotal_bandwidth = output['total_bandwidth']\nmidfreq = (output['maxfreq'] + output['minfreq']) / 2.\nminfreq = output['minfreq']\nmaxfreq = output['maxfreq']\n\ncwl_output = {}\ncwl_output['groupnames'] = groupnames\ncwl_output['total_bandwidth'] = total_bandwidth\ncwl_output['midfreq'] = midfreq\ncwl_output['minfreq'] = minfreq\ncwl_output['maxfreq'] = maxfreq\n\nwith open('./filenames.json', 'w') as fp:\n json.dump(filenames, fp)\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "sort_times.py" ] ] ; cwl:stderr "sort_times_into_freqGroups_err.log" ; cwl:stdout "sort_times_into_freqGroups.log" . sld:type cwl:File . rdfs:comment "What storage manager to use." ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string , sld:null . rdfs:comment "Output data in MeasurementSet format." ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . cwl:pickValue "the_only_non_null" ; cwl:source . cwl:source . rdfs:comment "Propagate solutions of the previous time slot only if the solve converged" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; sld:default true ; sld:type sld:null , xsd:boolean . cwl:source . cwl:source . rdfs:label "losoto_plot_tec" ; cwl:in , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute && inputs.selfcal_strategy == \"LBA\")" . cwl:outputBinding [ CommandOutputBinding:glob "$(runtime.outdir)/cwl.output.json" ; CommandOutputBinding:outputEval "$(self.output)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(runtime.outdir)/cwl.output.json" ; CommandOutputBinding:outputEval "$(self.output)" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:type cwl:Directory , cwl:File . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string , sld:null . cwl:source . sld:default -5e-01 , 5e-01 . rdfs:comment "Kernel size in Hz" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type xsd:float , sld:null . sld:default 5e+07 ; sld:type xsd:float , sld:null . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.missingdata=True" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.missingdata=True" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:type xsd:boolean , sld:null . sld:default true . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; sld:type cwl:File , sld:null . rdfs:comment "Filename of output H5Parm" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; sld:default "instrument.h5" ; sld:type xsd:string , sld:null . rdfs:label "blank_image_reg" ; cwl:in , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.region != null)" . cwl:source . cwl:source . rdfs:label "save_skymodels" ; cwl:in , ; cwl:out ; cwl:run . sld:default 1.8e+00 . sld:default "MODEL_DATA" . sld:default 0 . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; sld:type cwl:File . cwl:source ; cwl:valueFrom "$(self+\"amplitude\")" . cwl:source . sld:default "sol000/tec000" . sld:default 16 . sld:default "aoflag_residual" . sld:default 4 . sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . sld:default 2000 . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . a cwl:CommandLineTool ; rdfs:label "TaQL" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "taql" ) ; cwl:baseCommand ( "taql" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , ; cwl:outputs , ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin 2 ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin 2 ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "taql_err.log" ; cwl:stdout "taql.log" . sld:default true . sld:default 2e-01 . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; sld:default 1000 ; sld:type sld:null , xsd:int . sld:type cwl:Directory , sld:null . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "clipper.sourcedb=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory , cwl:File . rdfs:comment "Stepsize between iterations" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; sld:default 2e-01 ; sld:type xsd:float , sld:null . sld:type cwl:File , sld:null . sld:default "GSM" ; sld:type xsd:string , sld:null . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . cwl:source . cwl:source . rdfs:label "concat_logfiles_RefAnt" ; cwl:in , ; cwl:out ; cwl:run . sld:default "time" , "freq" . cwl:source . sld:default "LINC" . cwl:outputBinding [ CommandOutputBinding:glob "plot_demix_solutions*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:type cwl:File . rdfs:label "apply_targ2" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:outputBinding [ CommandOutputBinding:glob "aoflag.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "aoflag.log" ] ; sld:type cwl:File . sld:default "ant" . cwl:source . sld:type xsd:string , sld:null . cwl:outputSource ; sld:type cwl:File . rdfs:label "concat_logfiles_calib_targ_amp" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . sld:type xsd:int , sld:null . sld:default "phase" ; sld:type xsd:string , sld:null . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source , ; cwl:valueFrom "$(self.join('_')+'_structure')" . sld:default "amplitudeSmooth" . sld:default 10000 . sld:default true . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . sld:default "MODEL_DATA" . cwl:source . sld:default false ; sld:type xsd:boolean , sld:null . sld:default "CORRECTED_DATA" . cwl:outputSource ; sld:type xsd:string . sld:default "Dysco" . cwl:source . cwl:source . rdfs:label "corrupt_fr" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . sld:default "Dysco" . cwl:outputSource ; sld:type cwl:File . rdfs:label "blank_image_reg_2" ; cwl:in , , , , ; cwl:out , ; cwl:run . cwl:outputSource ; sld:type cwl:Directory . cwl:source . cwl:source . cwl:source . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$([self])" . sld:type cwl:File . sld:default "0deg..15deg" ; sld:type xsd:string , sld:null . cwl:source . sld:default 1.8e+02 . cwl:outputSource ; sld:type cwl:Directory . cwl:source . sld:default 1e+00 . cwl:source . sld:type cwl:File . sld:default "ant" . cwl:source . cwl:valueFrom "$(1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) < 1 ? false : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) > 10 ? 10 : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)))" ; sld:default "getFWHM/fwhm" . cwl:source , , ; cwl:valueFrom "$(\"slow\"+self.join(''))" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solveralgorithm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solveralgorithm=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . cwl:source . rdfs:label "concat_logfiles_calib_targ2" ; cwl:in , ; cwl:out ; cwl:run . sld:default "CasA_Gaussian" , "CygA_Gaussian" , "TauA_Gaussian" , "VirA_Gaussian" ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . cwl:source . rdfs:comment "Input Measurement Set(s)" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:default "ant" . rdfs:comment "Filter these baselines for the comparison" ; sld:default "*&" ; sld:type xsd:string , sld:null . sld:default "pointing" ; sld:type xsd:string , sld:null . rdfs:label "save_logfiles" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msout_name==\".\" ? inputs.msin.basename : inputs.msout_name)" ] ; sld:type cwl:Directory . rdfs:comment "MS to check" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:Directory . sld:default true ; sld:type xsd:boolean , sld:null . sld:type cwl:File , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . sld:default false ; sld:type xsd:boolean , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . sld:default "findRefAnt" . rdfs:comment "Source of the skymodel" ; sld:default "TGSS" ; sld:type xsd:string , sld:null . cwl:source . sld:default 1 . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.onebeamperpatch=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:comment "input soltab name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; sld:type sld:null , xsd:string . sld:type [ sld:items [ sld:items cwl:File ; sld:type sld:array ] ; sld:type sld:array ] ; sld:type [ sld:items [ sld:items cwl:File ; sld:type sld:array ] ; sld:type sld:array ] ; sld:type [ sld:items [ sld:items cwl:File ; sld:type sld:array ] ; sld:type sld:array ] ; sld:type [ sld:items [ sld:items cwl:File ; sld:type sld:array ] ; sld:type sld:array ] ; sld:type [ sld:items [ sld:items cwl:File ; sld:type sld:array ] ; sld:type sld:array ] ; sld:type [ sld:items [ sld:items cwl:File ; sld:type sld:array ] ; sld:type sld:array ] ; sld:type [ sld:items [ sld:items cwl:File ; sld:type sld:array ] ; sld:type sld:array ] . rdfs:comment "Add dummy file-names for missing frequencies, so that DP3 can fill the data with flagged dummy data." ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default true ; sld:type xsd:boolean , sld:null . rdfs:comment "Flag only the unconverged solutions for which divergence was detected.\nAt the moment, this option is effective only for rotation+diagonal\nsolves, where divergence is detected when the amplitudes of any station\nare found to be more than a factor of 5 from the mean amplitude over all\nstations.\nIf divergence for any one station is detected, all stations are flagged\nfor that solution interval. Only effective when flagunconverged=true\nand mode=rotation+diagonal.\n" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . cwl:source . cwl:source . sld:default "ant" . sld:default true . rdfs:label "check_removed_groups" ; cwl:in , , ; cwl:out , ; cwl:run . sld:type xsd:boolean , sld:null . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source , , . rdfs:label "merge_array_files_lowres" ; cwl:in ; cwl:out ; cwl:run . cwl:source . cwl:inputBinding [ CommandLineBinding:prefix "msout.overwrite=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . rdfs:comment "Selection of antenna subarrays using reqular expression\n" ; sld:type xsd:string , sld:null . a cwl:Workflow ; rdfs:label "linc_target" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , , , ; cwl:requirements [ a cwl:StepInputExpressionRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] ; cwl:requirements [ a cwl:MultipleInputFeatureRequirement ] . cwl:outputBinding [ CommandOutputBinding:glob "filenames.json" ] ; sld:type cwl:File . sld:default "DATA" . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . cwl:source , , , ; cwl:valueFrom "$([self[0],self[1],self[2]*Math.round(195.3125 / parseFloat(self[3]))])" . sld:default "Dysco" . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . cwl:source . cwl:source . sld:default "phase" ; sld:type xsd:string , sld:null . a cwl:CommandLineTool ; rdfs:comment "Faraday rotation extraction from either a rotation table or a\ncircular phase (of which the operation get the polarisation difference).\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('FARADAY').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . rdfs:label "concat_logfiles_losoto" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . sld:default "pointing" ; sld:type xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "set CORRECTED_DATA = CORRECTED_DATA - MODEL_DATA" . sld:type xsd:string , sld:null . sld:default "pointing" ; sld:type xsd:string , sld:null . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:source . sld:default "CS001HBA0" ; sld:type xsd:string , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).groupnames)" ; cwl:loadContents true ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "tec000" . a cwl:Workflow ; rdfs:label "FR_targ" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , ; cwl:outputs , , , ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] ; cwl:requirements [ a cwl:MultipleInputFeatureRequirement ] . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applyphase.parmdb=" ; CommandLineBinding:separate false ; cwl:valueFrom "$(inputs.solutions.path)" ] ; sld:default false ; sld:type xsd:boolean , sld:null . a cwl:Workflow ; rdfs:label "gsmcal" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , , , , , , , , ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:StepInputExpressionRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] ; cwl:requirements [ a cwl:MultipleInputFeatureRequirement ] . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null , xsd:int . rdfs:label "plot_demix_solutions" ; cwl:in , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.demix)" . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:int , xsd:boolean , sld:null . cwl:source . cwl:source . rdfs:label "apply_and_concat_hires" ; cwl:in , , , , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:scatter ( ) ; cwl:scatterMethod ScatterMethod:dotproduct ; cwl:when "$(inputs.apply_solutions_fullres)" . rdfs:label "concat" ; cwl:in , , , , , , , ; cwl:out , , ; cwl:run ; cwl:scatter ( ) . rdfs:comment "Output image" ; cwl:outputBinding [ CommandOutputBinding:glob "demix_solutions_*.png" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Comma separated list of (zero-indexed) field ids to process" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "-fields" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "-fields" ; CommandLineBinding:shellQuote false ] ; sld:type sld:null ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . cwl:in , , , , , , , , , , , , , ; cwl:out , , , ; cwl:run ; cwl:when "$(inputs.execute)" . sld:default -3.14e+00 , 3.14e+00 . cwl:source , ; cwl:valueFrom "$(self.join('')+\"_final\")" . sld:default "SMOOTHED_DATA" . rdfs:label "save_results" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . cwl:source . a cwl:CommandLineTool ; rdfs:label "check_removed_groups" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( [ CommandLineBinding:position 0 ; cwl:valueFrom "check_removed_groups.py" ] ) ; cwl:baseCommand ( "python3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "import sys\nimport json\nimport os\n\nnull = []\n\ninputs = json.loads(r'''$(inputs)''')\nremoved_bands = inputs['removed_bands']\ngroupnames = inputs['groupnames']\njson_file = sys.argv[1]\n\nwith open(json_file, 'r') as f_stream:\n all_groups = json.load(f_stream)\n\nfor removed_band in removed_bands:\n if removed_band == 'None':\n continue\n all_groups.pop(removed_band)\n groupnames.remove(removed_band)\n\ncwl_output = {'groupnames' : groupnames}\n\nwith open('./out.json', 'w') as fp:\n json.dump(all_groups, fp)\n\nwith open('./groupnames.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "check_removed_groups.py" ] ] ; cwl:stderr "check_removed_groups_err.log" ; cwl:stdout "check_removed_groups.log" . sld:default 1000000 . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:comment "Input data Column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "DATA" ; sld:type xsd:string . cwl:source . cwl:source . cwl:source . sld:type cwl:File , sld:null . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean , xsd:int . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.usechannelfreq=False" ; cwl:valueFrom "$(!self)" ] ; sld:default true ; sld:type xsd:boolean , sld:null . sld:default 3 . rdfs:label "make_beam_reg" ; cwl:in , , ; cwl:out , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "h5parm_pointingname*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Output solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; sld:type sld:null , xsd:string . sld:default 1e-30 ; sld:type xsd:float , sld:null . sld:default "target" . cwl:source . cwl:source . sld:type xsd:boolean , sld:null . cwl:source . sld:type xsd:boolean , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "createh5parm*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default true . sld:default "MODEL_DATA" . cwl:source . sld:type cwl:File . cwl:source . cwl:source . rdfs:comment "Input image" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:File . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "DATA" ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . sld:type cwl:File . a cwl:CommandLineTool ; rdfs:label "merge_skymodels" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "merge_skymodels.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , ; cwl:stderr "merge_skymodels_err.log" ; cwl:stdout "merge_skymodels.log" . cwl:outputSource , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$(self+\"tec1\")" . cwl:source . rdfs:comment "Matching radius in degrees for identifying duplicate components" ; cwl:inputBinding [ CommandLineBinding:prefix "--radius=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default 8.33e-03 ; sld:type xsd:float , sld:null . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:label "H5parm_collector_tec1" ; cwl:in , , , ; cwl:out , ; cwl:run . sld:default -3.14e+00 , 3.14e+00 . sld:default "0,4,8,16,32,64" . rdfs:comment "Write ds9 regions" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-d" ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "sol000/rotation000" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; sld:type sld:null , cwl:Directory , cwl:File . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . rdfs:label "concat_logfiles_predict" ; cwl:in , ; cwl:out ; cwl:run . sld:default "plot_demix_solutions" . cwl:source ; cwl:valueFrom "$(Math.round(self/1e7) < 1 ? 1 : Math.round(self/1e7))" . sld:default 8 . sld:default "Dysco" . cwl:source . rdfs:comment "list of bad antennas (separated by semicolon), needs to adhere to the baseline-selection syntax" ; sld:default "" ; sld:type xsd:string , sld:null . sld:default 4500 . sld:default "20arcsec" . cwl:outputSource ; cwl:pickValue "the_only_non_null" ; sld:type cwl:File . rdfs:label "concat_logfiles_prep_target" ; cwl:in , ; cwl:out ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).lbfgs_historysize)" ; cwl:loadContents true ] ; sld:type xsd:int . a cwl:Workflow ; rdfs:label "losoto_amplitude" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs ; cwl:outputs , . rdfs:comment "Fraction of flagged data in a MS to be acceptable" ; sld:default 5e-01 ; sld:type xsd:float , sld:null . sld:default "time" . cwl:source . cwl:source . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:label "calib_targ_amp" ; cwl:in , , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source ; cwl:valueFrom "$(self.replaceAll(';',';!'))" . cwl:source , , ; cwl:valueFrom "$([self[0],self[1],self[2]])" . cwl:linkMerge "merge_flattened" ; cwl:source ; cwl:valueFrom "$(self.basename.split('.')[0])_pre-cal.ms" . rdfs:comment "Input measurement set" ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; sld:type cwl:Directory . rdfs:comment "Column name to smooth" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; sld:default "DATA" ; sld:type sld:null , xsd:string . cwl:source . sld:default "apply_gsmcal" . cwl:source ; cwl:valueFrom "$(self ? (false || inputs.selfcal_strategy == \"HBA\") : true)" . cwl:source ; cwl:valueFrom "$(self > 25e6 ? 5 : Math.round(self/4.e6) > 1 ? 3 : false)" . cwl:source . cwl:source . cwl:source . sld:default false . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "will produce verbose output" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "-v" ] ; sld:type xsd:boolean , sld:null . sld:default 300 . rdfs:label "gsmcal" ; cwl:in , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , , , , , , , , , ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:prefix "--ylabel" ] ; cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:prefix "--ylabel" ] ; sld:type xsd:string , sld:null . sld:default 8e+04 . sld:default 4500 . cwl:source . sld:default true . rdfs:comment "Name of the soltab to be checked for fully flagged antennas" ; cwl:inputBinding [ CommandLineBinding:prefix "--soltab=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "phase000" ; sld:type xsd:string , sld:null . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "filter.remove=True" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "filter.remove=True" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "GSM" ; sld:type xsd:string , sld:null . sld:default "CasA_Gaussian" , "CygA_Gaussian" , "TauA_Gaussian" , "VirA_Gaussian" ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "Plot file name, by default no plot." ; sld:type xsd:string , sld:null . rdfs:label "losoto_plot_P3" ; cwl:in , , , , , , , ; cwl:out , , ; cwl:run . sld:default true . cwl:source . sld:default 1.9e+08 ; sld:type xsd:float , sld:null . sld:default 5e+07 ; sld:type xsd:float , sld:null . sld:default -3.14e+00 , 3.14e+00 . rdfs:comment "Name of input LOFAR solution set in h5parm format" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:File . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).total_bandwidth)" ; cwl:loadContents true ] ; sld:type xsd:float . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ] ; sld:type cwl:Directory . rdfs:comment "Input measurement set" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:Directory ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "This will split the set into intervals with the given maximum size, and flag each interval independently" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-chunk-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-chunk-size" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:int , sld:null . sld:default "pol" . rdfs:comment "Download a new skymodel if given path is empty" ; sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . sld:type xsd:string , sld:null . sld:default 3 . cwl:source . sld:default "pol" . rdfs:comment "Output column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; sld:default "SMOOTHED_DATA" ; sld:type sld:null , xsd:string . cwl:source . rdfs:comment "output soltab name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsoltab" ] ; sld:type sld:null , xsd:string . cwl:source . sld:default "time" . cwl:source , . rdfs:label "pass_file_model_hires" ; cwl:in ; cwl:out ; cwl:run . sld:default "fr_ph" . rdfs:label "write_solutions" ; cwl:in , , , , , , , ; cwl:out , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).bad_antennas)" ; cwl:loadContents true ] ; sld:type xsd:string . cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:prefix "--min_separation" ] ; sld:type xsd:int , sld:null . cwl:outputSource ; sld:type cwl:File . cwl:source . cwl:source . cwl:source . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . cwl:outputSource ; sld:type xsd:float . cwl:source . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . cwl:outputSource ; sld:type cwl:File . cwl:source . sld:default "MODEL_DATA" . cwl:source . sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . sld:default 4 . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).demix_sources)" ; cwl:loadContents true ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default true . rdfs:label "selfcal_target_hba" ; cwl:in , , , , , , , , , , , , , , , , , , ; cwl:out , , , , , , ; cwl:run ; cwl:when "$(inputs.execute && inputs.selfcal_strategy == 'HBA')" . sld:default true . sld:default "LBA" . sld:type cwl:File , sld:null . a cwl:Workflow ; rdfs:label "selfcal_target" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , , , ; cwl:outputs , , , , , , ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] . rdfs:comment "Number of cpu to use, by default all available." ; sld:type xsd:int , sld:null . rdfs:comment "Will perform the slowest IO but will always work.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-direct-read" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-direct-read" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:boolean , sld:null . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote true ; cwl:valueFrom "$(self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote true ; cwl:valueFrom "$(self)" ] ; sld:type xsd:string , sld:null . sld:default "pol" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:float , xsd:boolean , sld:null . cwl:valueFrom "$(1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) < 1 ? false : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) > 10 ? 10 : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)))" ; sld:default "getFWHM/fwhm" . cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--outputimage" ] ; sld:default "Ateam_separation.png" ; sld:type xsd:string , sld:null . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:label "average" ; cwl:in , , , , , , , ; cwl:out , ; cwl:run ; cwl:scatter ( ) ; cwl:scatterMethod ScatterMethod:dotproduct . sld:default "sol000/amplitude000" . cwl:source . sld:default 5e-01 . rdfs:comment "Prefix to add before the self-generated filename.\n" ; sld:default "losoto.plot." ; sld:type xsd:string , sld:null . sld:default -1e+00 , 1e+00 . cwl:outputSource ; sld:type cwl:File . sld:default true . rdfs:label "apply_targ_amp_2" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run ; cwl:scatter ( ) . sld:default "ph_" . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . sld:type xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:comment "Optional extra data columns to read" ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:type xsd:int , sld:null . sld:type xsd:string , sld:null . rdfs:comment "Output Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; sld:default "." ; sld:type xsd:string , sld:null . cwl:source . sld:default 0e+00 ; sld:type xsd:float , sld:null . cwl:source . cwl:source . sld:type cwl:File . cwl:source . sld:default 50 ; sld:type xsd:float , sld:null . cwl:source . cwl:source . sld:default "predict_targ" . sld:default "predict_targ" . cwl:source ; cwl:valueFrom "uv\\ coverage\\ of\\ the\\ target\\ pointing:\\ $(self)" . cwl:pickValue "first_non_null" ; cwl:source , . cwl:source . sld:default "" . rdfs:comment "Output Measurement Set" ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string , sld:null . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:comment "Filename of output H5Parm (to be read by e.g. losoto)" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; sld:type cwl:File . cwl:source . cwl:outputSource ; sld:type cwl:File . sld:default "DATA" . cwl:outputBinding [ CommandOutputBinding:glob "get_targetname*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default false . cwl:source . sld:default "pol" . sld:default 4096 . cwl:source . sld:default 1000000 . rdfs:comment "If False then weights are untouched, if True they are replicated\nlike data. Default: True.\n" ; sld:type xsd:boolean , sld:null . sld:default "spinifex" . sld:type cwl:File , sld:null . sld:default "Dysco" . rdfs:comment "Summary File in JSON format" ; cwl:outputBinding [ CommandOutputBinding:glob "*.json" ] ; sld:type cwl:File . sld:default true . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default false ; sld:type xsd:boolean , sld:null . rdfs:comment "pixel value to be set" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--blankval" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--blankval" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--blankval" ] ; sld:default 0e+00 ; sld:type xsd:float , sld:null . sld:default 20 . sld:default "Dysco" . cwl:source . rdfs:comment "Determines whether to use the beam model.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "clipper.usebeammodel=True" ; CommandLineBinding:shellQuote false ] ; sld:default true ; sld:type xsd:boolean , sld:null . sld:default "" . rdfs:comment "Output h5parm name" ; sld:default "output.h5" ; sld:type cwl:File . cwl:source ; cwl:valueFrom "$(self ? (false || inputs.selfcal_strategy == \"HBA\") : true)" . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source , , . sld:default "faraday" . rdfs:comment "List of files with flag information (JSON)" ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; sld:type cwl:File ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default 1e-30 ; sld:type xsd:float , sld:null . sld:default 6e-01 . cwl:source . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . rdfs:comment "Type of correction to perform. When using H5Parm, this is for now the name of the soltab; the type will be deduced from the metadata in that soltab, except for full Jones, in which case correction should be 'fulljones'.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; sld:default "gain" ; sld:type xsd:string . sld:default "sol000/phase000" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.beammode=" ; CommandLineBinding:separate false ] ; sld:default "default" ; sld:type xsd:string , sld:null . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "Dysco" . rdfs:comment "soltab in which spinifex solution are put" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab-name" ] ; sld:default "rotation000" ; sld:type xsd:string , sld:null . rdfs:comment "output mask" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.mask_name)" ] ; sld:type cwl:File . sld:default "briggs -0.5" . rdfs:comment "Path of parmdb in which the parameters are stored. This can also be an H5Parm file, in that case the filename has to end in '.h5'" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; sld:type cwl:File . sld:type xsd:boolean , sld:null . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.chunkduration=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.chunkduration=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:type xsd:float , sld:null . cwl:source . sld:default "Dysco" . rdfs:comment "Do not smooth in frequency" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; sld:default false ; sld:type sld:null , xsd:boolean . cwl:source ; cwl:valueFrom "$(self+\"_blank1.fits\")" . rdfs:label "image_lowres" ; cwl:in , , , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , , , ; cwl:run . sld:default 0 . sld:default true ; sld:type xsd:boolean , sld:null . sld:type xsd:boolean , sld:null . rdfs:label "check_demix" ; cwl:in , , , , , , , , ; cwl:out , , , , , , , , ; cwl:run . cwl:source ; cwl:valueFrom "$(self > 25e6 ? 5 : Math.round(self/4.e6) > 1 ? 3 : false)" . rdfs:label "getFWHM" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . a cwl:Workflow ; rdfs:label "prep" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , , , , , , , , , , , , , , , , , , ; cwl:requirements [ a cwl:MultipleInputFeatureRequirement ] ; cwl:requirements [ a cwl:StepInputExpressionRequirement ] ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] . cwl:source ; cwl:valueFrom "$(self == \"phase\" ? \"phaseonly\" : self)" . cwl:source . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "python3" "find_sky.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:NetworkAccess ; NetworkAccess:networkAccess true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "import sys\nimport shutil\nimport os\nimport json\n\nnull = None\n\nfrom download_skymodel_target import main as download_skymodel_target\n\nmss = sys.argv[1:]\ninputs = json.loads(r'''$(inputs)''')\ntargetname = inputs['targetname']\nfluxlimit = inputs['fluxlimit']\n\nSkymodelPath = inputs['SkymodelPath']\nif SkymodelPath is None:\n pass\nelse:\n SkymodelPath = SkymodelPath[\"path\"]\n shutil.copyfile(SkymodelPath, targetname + \".skymodel\")\n\nSkymodelPath = os.getcwd() + \"/\" + targetname + \".skymodel\"\nRadius = inputs['Radius']\nSource = inputs['Source']\nDoDownload = str(inputs['DoDownload'])\n\noutput = download_skymodel_target(mss, SkymodelPath, Radius, DoDownload, Source, targetname, fluxlimit)\n" ; cwl:entryname "find_sky.py" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stdout "find_skymodel_target.log" . rdfs:comment "Number of how many files should be grouped together in frequency." ; sld:default 10 ; sld:type xsd:int , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "summary*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source . sld:default 250 . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-f" ] ; sld:type xsd:float , sld:null . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; sld:default "phase000" ; sld:type xsd:string , sld:null . sld:default "image_target" . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default 30 ; sld:type xsd:int , sld:null . rdfs:comment "Specifies the telescope if mode = 'bandpass'." ; sld:type xsd:string , sld:null . cwl:source . cwl:source . rdfs:label "aoflag_residual" ; cwl:in , , , , , ; cwl:out , ; cwl:run . sld:default 200 ; sld:type xsd:float , sld:null . a cwl:CommandLineTool ; rdfs:label "plot_demix_solutions" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "plot_demixing_solutions.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "plot_demix_solutions_err.log" ; cwl:stdout "plot_demix_solutions.log" . cwl:source . sld:default 8 . sld:type xsd:string , sld:null . rdfs:comment "Tabs to plot" ; sld:type xsd:string . sld:default 285000 . cwl:source . sld:default "full" . rdfs:label "calibrate_target" ; cwl:in , , , , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.selfcal_strategy == 'HBA')" . rdfs:comment "Solution table" ; sld:type xsd:string . rdfs:label "prep_flags_join" ; cwl:in , , , ; cwl:out , , , ; cwl:run . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:outputSource ; sld:type cwl:File . rdfs:comment "Define output file name for JSON statistics" ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; sld:default "out.json" ; sld:type sld:null , xsd:string . sld:default false . cwl:source , ; cwl:valueFrom "$(self[0]*Math.round(195.3125 / parseFloat(self[1])))" . sld:default true . cwl:source . sld:default "rotation+diagonal" . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default false ; sld:type xsd:boolean , sld:null . cwl:outputSource ; sld:type cwl:File . rdfs:comment "Solution interval in timesteps" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; sld:default 1 ; sld:type xsd:int , sld:null . sld:default false ; sld:type xsd:boolean , sld:null . sld:default "DATA" . sld:default true . rdfs:comment "List of bad antennas" ; sld:default "" ; sld:type xsd:string , sld:null . rdfs:comment "Keep history of the export soltabs" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; sld:default false ; sld:type xsd:boolean . sld:default true . rdfs:comment "Specify column to flag" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-column" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-column" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:string , sld:null . cwl:source . sld:type xsd:float , sld:null . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; sld:default "unit" ; sld:type xsd:string , sld:null . rdfs:comment "output image as given as output file name" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outfile)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outfile)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outfile)" ] ; sld:type cwl:File . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . cwl:linkMerge "merge_flattened" ; cwl:outputSource , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:label "calib_targ1" ; cwl:in , , , , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run . rdfs:label "losoto_plot_amp" ; cwl:in , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . sld:default "DATA" . cwl:source . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . sld:type cwl:File , sld:null . rdfs:label "concat_logfiles_BLsmooth" ; cwl:in , ; cwl:out ; cwl:run . sld:default "target/spinifex" . sld:default 1.5e+00 . cwl:source . cwl:source . cwl:source . cwl:source . cwl:source . rdfs:comment "Input image" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:Directory ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "Name of the output image" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--output" ; CommandLineBinding:shellQuote false ] ; sld:default "uv-coverage.png" ; sld:type xsd:string , sld:null . cwl:outputSource ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:outputSource ; sld:type cwl:File . sld:type xsd:string , sld:null . rdfs:comment "Write BBS gaul skymodel" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-g" ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:comment "Reference antenna, by default the first." ; sld:type xsd:string , sld:null . cwl:outputSource ; sld:type cwl:File . sld:default "Dysco" . cwl:source . a cwl:CommandLineTool ; rdfs:comment "Replace the values along a certain axis taking them from one specific axis\ncell\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('REPLICATEONAXIS').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('REPLICATEONAXIS').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . sld:default true . rdfs:label "concat_logfiles_apply_targ2" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . cwl:source ; cwl:valueFrom "$(self+\".mask\")" . rdfs:comment "Ignore baselines / channels with UV < uvlambdamin wavelengths." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; sld:default 3e+02 ; sld:type xsd:float , sld:null . sld:default "briggs -0.3" . cwl:source . cwl:source . rdfs:comment "Max average residual in radians before flagging datapoint,\nby default 1. If 0: no check.\n" ; sld:type xsd:float , sld:null . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:int , xsd:boolean , sld:null . sld:default 500 . sld:default true . rdfs:comment "Input measurement set" ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; sld:type cwl:Directory . cwl:source . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:prefix "msout.writefullresflag=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . a cwl:CommandLineTool ; rdfs:label "summary" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "make_summary.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , , ; cwl:outputs , ; cwl:stderr "summary_err.log" ; cwl:stdout "summary.log" . rdfs:comment "List of soltabs to subtract" ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$(self)_uv-coverage.png" . cwl:source . sld:type xsd:float , sld:null . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:string , sld:null , xsd:boolean . rdfs:label "make_mask_image" ; cwl:in , , , , , , , , , , , , , , , , , , ; cwl:out , , , , , ; cwl:run . rdfs:comment "Output logfile" ; cwl:outputBinding [ CommandOutputBinding:glob "taql*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "taql*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . sld:default "CORRECTED_DATA" . sld:default 1e-03 . cwl:source . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . cwl:pickValue "first_non_null" ; cwl:source , . sld:default "sol000" . sld:type cwl:File . rdfs:comment "Whether to plot also flags as red points in 2D plots." ; sld:default false ; sld:type xsd:boolean , sld:null . a cwl:Workflow ; rdfs:label "HBA_target" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , , , ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] . sld:default 2000 ; sld:type xsd:int , sld:null . cwl:source . cwl:source , ; cwl:valueFrom "$(self.join(''))" . sld:default "MODEL_DATA" . rdfs:label "losoto_plot_tec1" ; cwl:in , , , , , , , ; cwl:out , , ; cwl:run . rdfs:comment "Propagate solutions of the previous time slot only if the solve converged" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(self ? (false || inputs.selfcal_strategy == \"HBA\") : true)" . cwl:source . cwl:outputSource ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "time" , "ant" , "freq" . sld:default 1 ; sld:type xsd:int , sld:null . sld:type cwl:File . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "filter.baseline=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote true ; cwl:valueFrom "$(self)" ] ; sld:type xsd:string , sld:null . cwl:source . sld:default 1500 . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 0 ? Math.round(self/4.e6) : 1)" . cwl:source . cwl:source . rdfs:comment "Smooth only amplitudes" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "H5parm_collector" ; cwl:in , , , ; cwl:out , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).FWHM)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).FWHM)" ; cwl:loadContents true ] ; sld:type xsd:float . cwl:outputSource , , ; cwl:pickValue "first_non_null" ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . cwl:source . rdfs:label "final_flags_join" ; cwl:in , , ; cwl:out ; cwl:run . cwl:source . sld:type cwl:File , sld:null . rdfs:comment "input image as output" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_image.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_image.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_image.basename)" ] ; sld:type cwl:File . sld:default "DATA" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory , cwl:File , sld:null . sld:default "MODEL_DATA" . sld:type xsd:int , sld:null . cwl:outputSource ; sld:type cwl:File . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:source . sld:default -3.14e+00 , 3.14e+00 . rdfs:comment "baseline filter statement to be further propagated through the pipeline, needs to adhere to to baseline-selection syntax (input_filter + bad_antennas)" ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; sld:type xsd:string . cwl:source ; cwl:valueFrom "$(self ? \"True\" : \"False\")" . sld:default -3.14e+00 , 3.14e+00 . cwl:inputBinding [ CommandLineBinding:prefix "--outmodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "output.skymodel" ; sld:type xsd:string , sld:null . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "Number of cores" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; sld:default 4 ; sld:type xsd:int , sld:null . sld:type xsd:boolean , sld:null . cwl:source . rdfs:comment "Will select either memory or direct mode based on available memory (default).\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-auto-read" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-auto-read" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:boolean , sld:null . rdfs:label "merge_array_concat_hires" ; cwl:in , ; cwl:out ; cwl:run ; cwl:when "$(inputs.apply_solutions_fullres)" . rdfs:label "concat_logfiles_makemask" ; cwl:in , ; cwl:out ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction).log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "tec" . cwl:source . cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "--clip_sources" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self)" ] ; sld:default false ; sld:type xsd:boolean , xsd:string , sld:null . sld:default "sol000/phase000" . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--solutions" ] ; sld:default false ; sld:type xsd:boolean , cwl:File , sld:null . rdfs:comment "Type of constraint to apply. Options are\n" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] . sld:default 0e+00 ; sld:type xsd:float , sld:null . sld:default true . sld:type xsd:int , sld:null . cwl:source . sld:default "ant" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; sld:default 1e+15 ; sld:type xsd:float , sld:null . sld:default 2e+02 ; sld:type xsd:float , sld:null . cwl:outputSource ; sld:type cwl:Directory . cwl:source ; cwl:valueFrom "$(self.join(','))" . sld:type xsd:string , sld:null . cwl:linkMerge "merge_flattened" ; cwl:source , , . sld:default "HBA" ; sld:type xsd:string , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).midfreq)" ; cwl:loadContents true ] ; sld:type xsd:float . cwl:source ; cwl:valueFrom "$(self+\"amplitude\")" . cwl:source . sld:default true . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean , xsd:int . cwl:outputBinding [ CommandOutputBinding:glob "collect_flag_statistics*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "collect_flag_statistics*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "collect_flag_statistics*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "collect_flag_statistics*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "collect_flag_statistics*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:source . cwl:source . cwl:source . sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . sld:default "target" . cwl:source . sld:default true . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; sld:type xsd:float , sld:null . cwl:outputSource ; sld:type cwl:File . cwl:outputSource , ; cwl:pickValue "first_non_null" ; sld:type cwl:File . cwl:source . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default 1 . sld:type cwl:File . a cwl:CommandLineTool ; rdfs:label "BLsmooth" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "BLsmooth.log" . cwl:source . cwl:source . rdfs:comment "MS to compare with" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . sld:type cwl:Directory , cwl:File . cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; sld:type cwl:File . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--limits" ; CommandLineBinding:shellQuote false ] ; sld:default ",,," ; sld:type xsd:string , sld:null . sld:default "pointing" ; sld:type xsd:string , sld:null . sld:default true . rdfs:comment "Input data Column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "DATA" ; sld:type xsd:string , sld:null . rdfs:comment "Path of parmdb in which the parameters are stored. This can also be an H5Parm file, in that case the filename has to end in '.h5'" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; sld:type cwl:File . sld:type xsd:string , sld:null . cwl:source , ; cwl:valueFrom "$(self.join(''))" . cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "--instrument_tables" ; cwl:valueFrom "[$(self.map(function(directory){ return directory.path; }).join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:default "Dysco" . cwl:outputSource ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:default 1.2e+08 . cwl:source . sld:default true . cwl:source . sld:default 2000 ; sld:type xsd:int , sld:null . sld:default "calib_targ_amp" . cwl:source . rdfs:comment "Concatenate all input SBs on-the-fly" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-concatenate-frequency" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-concatenate-frequency" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default true . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source . rdfs:comment "Reference antenna for phases. By default None.\n" ; sld:default "CS001HBA0" ; sld:type xsd:string , sld:null . cwl:source . rdfs:comment "Solution table" ; sld:type xsd:string . sld:type cwl:Directory , cwl:File . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory , sld:null . cwl:source . a cwl:ExpressionTool ; rdfs:label "CollectFiles" ; ns1:original_cwlVersion "v1.2" ; ExpressionTool:expression "${\n var input_filesList = Array.isArray(inputs.files) ? inputs.files : [inputs.files];\n var filesList = input_filesList.map(function(file) {\n var newFile = Object.assign({}, file);\n newFile.basename = inputs.prefix + newFile.basename; // add optional prefix\n return newFile;\n });\n\n if (inputs.start_directory === null) {\n // No start directory - create new directory with sub_directory_name\n return {\n \"dir\": {\n \"class\": \"Directory\",\n \"basename\": inputs.sub_directory_name,\n \"listing\": filesList\n }\n };\n } else {\n // Start directory exists - create subdirectory inside it\n return {\n \"dir\": {\n \"class\": \"Directory\",\n \"basename\": inputs.start_directory.basename,\n \"listing\": [\n {\n \"class\": \"Directory\",\n \"basename\": inputs.sub_directory_name,\n \"listing\": filesList\n }\n ]\n }\n };\n }\n}" ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , ; cwl:outputs ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] . rdfs:comment "Use Log=’XYZ’ to set which axes to put in Log.\n" ; sld:type xsd:string , sld:null . cwl:source . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "predict_cal*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "filter.baseline=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote true ; cwl:valueFrom "$(self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "filter.baseline=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote true ; cwl:valueFrom "$(self)" ] ; sld:type xsd:string , sld:null . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source , , . cwl:outputSource ; sld:type cwl:File . cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . sld:type xsd:boolean , sld:null . a cwl:CommandLineTool ; rdfs:label "concatfiles" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , ; cwl:outputs ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] . rdfs:label "concat_logfiles_corrupt" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . sld:default "target" . sld:default "target" . sld:default 20000 ; sld:type sld:null ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . sld:default 20 ; sld:type xsd:int , sld:null . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . cwl:source . rdfs:label "concat_logfiles_calib_targ" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "overrides the number of threads specified in the strategy\n(default: one thread for each CPU core)\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:int , sld:null . rdfs:label "apply_calibrate_tec" ; cwl:in , , , , , , , , , , , ; cwl:out , , , , , , , , , , , ; cwl:run ; cwl:scatter ( ) ; cwl:scatter ( ) . sld:default "/tmp" ; sld:type xsd:string , sld:null . sld:default true . cwl:linkMerge "merge_flattened" ; cwl:source , , , , . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory . rdfs:comment "Output h5parm" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; sld:type cwl:File . rdfs:comment "2-element array of the median amplitude level to be acceptable,\n ampRange[0]: lower limit, ampRange[1]: upper limit.\nIf None or [0, 0], a reasonable range for typical observations is used.\n" ; sld:type sld:null ; sld:type [ sld:items xsd:float ; sld:type sld:array ] . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).demix == 0 ? false : true)" ; cwl:loadContents true ] ; sld:type xsd:boolean . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default 5000 . rdfs:comment "Add dummy file-names for missing frequencies, so that DP3 can fill the data with flagged dummy data." ; sld:default true ; sld:type xsd:boolean , sld:null . sld:default "phaseonly" ; sld:type xsd:string , sld:null . sld:default "losoto_gsmcal" . rdfs:label "image_hires" ; cwl:in , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , , , ; cwl:run . sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:type xsd:string , sld:null . sld:default true . cwl:source . sld:default "briggs -0.3" . cwl:source . sld:default true . rdfs:comment "Ignore baselines / channels with UV < uvlambdamin wavelengths." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; sld:default 3e+02 ; sld:type sld:null , xsd:float . rdfs:comment "Comma separated list of (zero-indexed) band ids to process" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "-bands" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "-bands" ; CommandLineBinding:shellQuote false ] ; sld:type sld:null ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . rdfs:label "merge_array_files_amp_1" ; cwl:in ; cwl:out ; cwl:run . rdfs:comment "Solution table" ; sld:type xsd:string . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , xsd:string , sld:null . cwl:source . sld:type xsd:string . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . sld:type xsd:float , sld:null . cwl:source ; cwl:valueFrom "$(self+'_summary')" . rdfs:label "concat_logfiles_clipper" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:outputSource ; sld:type cwl:File . cwl:linkMerge "merge_flattened" ; cwl:source , . rdfs:label "DP3.Execute" ; cwl:in , , , , , , , , , , , ; cwl:out , , , , ; cwl:run . cwl:source . rdfs:label "concat_logfiles_applygsm_final" ; cwl:in , ; cwl:out ; cwl:run . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:pickValue "first_non_null" ; cwl:source , , . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . rdfs:label "find_skymodel_target" ; cwl:in , , , , , , ; cwl:out , ; cwl:run . cwl:source . cwl:source . sld:default "concat" . cwl:source . cwl:source ; cwl:valueFrom "$(self ? (false || inputs.selfcal_strategy == \"HBA\") : true)" . cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . rdfs:label "subtract_model" ; cwl:in , ; cwl:out , ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; sld:type cwl:File , sld:null . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 1)" . cwl:source . sld:default true . rdfs:comment "Plot of the uv-coverage" ; cwl:outputBinding [ CommandOutputBinding:glob "*$(inputs.output_name.split('.').pop())" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$(\"ph_\"+self+\"_poldif\")" . sld:default "array_factor" . sld:type xsd:float , sld:null . sld:type xsd:int , sld:null . sld:type cwl:File . rdfs:comment "Filename of output H5Parm (to be read by e.g. losoto)" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; sld:type cwl:File . rdfs:label "H5parm_collector_tec2" ; cwl:in , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source , . cwl:source . sld:default true . cwl:outputSource ; sld:type cwl:File . rdfs:label "Ateam_flags_join" ; cwl:in , , ; cwl:out ; cwl:run . sld:default 50 ; sld:type xsd:float , sld:null . cwl:source . rdfs:label "write_solutions_amp" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . sld:type cwl:File , sld:null . cwl:outputSource ; sld:type xsd:string . rdfs:comment "H5parm database to compare with" ; sld:type cwl:File , sld:null . sld:type cwl:Directory . cwl:source . sld:type xsd:int , sld:null . a cwl:CommandLineTool ; rdfs:comment "Subtract/divide two tables or a clock/tec/tec3rd/rm from a phase." ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('RESIDUALS').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . sld:default "0deg..15deg" ; sld:type xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:position -1 ] ; sld:type cwl:File , sld:null . sld:default 50 . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--ionex" ; CommandLineBinding:separate true ; CommandLineBinding:shellQuote false ] ; sld:default "True" ; sld:type xsd:string , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "check_demix.log" ] ; sld:type cwl:File . cwl:source ; cwl:valueFrom "$(self == \"phase\" || self == \"scalarphase\" ? 'phase000':self+'000')" . rdfs:comment "Dictionary that contains the flagged fraction per station" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; sld:type xsd:string . sld:default "ant" . cwl:source . cwl:source . rdfs:label "concat_logfiles_BLsmooth" ; cwl:in , ; cwl:out ; cwl:run . rdfs:label "apply_targ" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . rdfs:label "check_Ateam_separation" ; cwl:in , ; cwl:out , , ; cwl:run . sld:type xsd:boolean , sld:null . sld:default 1e-03 . sld:type cwl:File , xsd:string , sld:null . cwl:source . cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 0 ? Math.round(self/4.e6) : 1)" . rdfs:label "replicate" ; cwl:in , , , ; cwl:out , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "make_beam_reg*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source , ; cwl:valueFrom "$(self.join('')+\"_\")" . rdfs:label "plot_demix_noise_ratio" ; cwl:in , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.demix)" . rdfs:comment "Reference antenna used" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refant" ] ; sld:default "" ; sld:type xsd:string , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:label "corrupt_amp" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "blank_image_reg*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "blank_image_reg*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "blank_image_reg*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . sld:default 5e+07 ; sld:type xsd:float , sld:null . rdfs:comment "Add these baseline selection parameter for the filter_out variable to make it a compatible filter statement for upcoming DP3 calls (default all cross-correlations)" ; sld:default "" ; sld:type xsd:string , sld:null . cwl:source . a cwl:CommandLineTool ; rdfs:comment "Simulates data for the A-team sources based off a skymodel,\nand flags the visibilities of the input MeasuremenSet where\nthe model data exceeds the threshold for LBA (50 janskys)\nor HBA (5 janksys).\n" ; rdfs:label "clip A-team" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[filter,count1,clipper,count2]" "msout=." "count1.save=true" "count2.save=true" ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , ; cwl:outputs , , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:stderr "clipper_err.log" ; cwl:stdout "clipper.log" . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . sld:default false ; sld:type xsd:boolean , sld:null . sld:default -3.14e+00 , 3.14e+00 . sld:default "CS001HBA0" ; sld:type xsd:string , sld:null . rdfs:comment "Input h5parm solutions file" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; sld:type cwl:File . rdfs:comment "Baselines to be selected" ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; sld:type sld:null , xsd:string . cwl:source . sld:default "10arcsec" . sld:default true . sld:default 10000 . sld:default "target" . cwl:source . rdfs:comment "Optional extra data columns to read" ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "target" . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:type xsd:string , sld:null . cwl:outputSource ; sld:type xsd:string . sld:default true . cwl:source . cwl:source ; cwl:valueFrom "$(self/2.0)" . rdfs:comment "Output data column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; sld:type xsd:string . sld:default "prep" . cwl:source . cwl:source . cwl:source . cwl:source . a cwl:CommandLineTool ; rdfs:label "check_demix" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "python3" "check_demix.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , ; cwl:outputs , , , , , , , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ cwl:entry "import json\nimport os\nimport lsmtool\nimport numpy, math\nnull = None\n\nfrom tune_demixing_parameters import main as tune_demixing_parameters\n\ntargets = {'CasA' : {'ra' : 6.123487680622104, 'dec' : 1.0265153995604648}, \\\n 'CygA' : {'ra' : 5.233686575770755, 'dec' : 0.7109409582180791}, \\\n 'TauA' : {'ra' : 1.4596748493730913, 'dec' : 0.38422502335921294}, \\\n 'HerA' : {'ra' : 4.4119087330382163, 'dec' : 0.087135562905816893}, \\\n 'VirA' : {'ra' : 3.276086511413598, 'dec' : 0.21626589533567378}, \\\n 'Sun' : {'ra' : 0, 'dec' : 0 }, \\\n 'Jupiter': {'ra' : 0, 'dec' : 0 }, \\\n 'Moon' : {'ra' : 0, 'dec' : 0 }}\n\n## set default values\nparameters = {'demixtimeresolution': 10, \\\n 'demixfreqresolution': 48820, \\\n 'maxiter': 20, \\\n 'lbfgs.historysize': 10, \\\n 'lbfgs.robustdof': 200}\n\ninputs = json.loads(r'''$(inputs)''')\n\ndemix = inputs['demix']\ndemix_sources = inputs['demix_sources']\nclip_sources = inputs['clip_sources']\nskymodel = inputs['skymodel']\ntarget_skymodel = inputs['target_skymodel'][\"path\"]\nfuzzy_config = inputs['fuzzy_config']\nAteam_separation_file = inputs['Ateam_separation_file'][\"path\"]\ntolerance_arcmin = 6.0\nclipAteam = inputs['clipAteam']\nuse_dnn = inputs['use_dnn']\n\nif not clipAteam:\n clip_sources = []\nif fuzzy_config is None:\n fuzzy_config = os.path.expandvars(\"$LINC_DATA_ROOT/configs/demix_fuzzy_config.json\")\nelse:\n fuzzy_config = fuzzy_config[\"path\"]\nif skymodel is None:\n skymodel = os.path.expandvars(\"$LINC_DATA_ROOT/skymodels/A-Team.skymodel\")\nelse:\n skymodel = skymodel[\"path\"]\ns = lsmtool.load(skymodel)\n\nf = open(Ateam_separation_file, 'r')\nAteam_separation = json.load(f)\nf.close()\n\ndemix_sources_fixed = True if demix == 1 else False ## stick to given selection, since user enforced it\n\nif demix is None: ## choose demix candidates according to the information given in the Ateam_separation_file\n demix = 0\n demix_list = []\n for item in Ateam_separation:\n ra = math.degrees(targets[item['source']]['ra'])\n dec = math.degrees(targets[item['source']]['dec'])\n dist_deg = s.getDistance(ra, dec, byPatch=True)\n if any(dist_deg * 60.0 < tolerance_arcmin):\n for index in numpy.where(dist_deg * 60 < tolerance_arcmin)[0]:\n patch_name = s.getPatchNames()[index]\n if patch_name in demix_sources:\n demix_list.append(patch_name)\n demix = 1\n demix_sources = demix_list\nelif demix == 0:\n demix_sources = []\nif demix == 1: ## determine demix parameters and remove sources to be demix if needed and allowed as well as determine sources to be clipped\n print(\"INFO: Will determine demixing parameters for: \" + str(demix_sources))\n parameters, info = tune_demixing_parameters(MS='*.MS', sky_model=skymodel, target_sky_model=target_skymodel, fuzzy_config=fuzzy_config, patches=demix_sources, use_DNN=use_dnn)\n if not demix_sources_fixed and len(demix_sources) > 1:\n demix_sources = parameters['subtractsources']\n patches = s.getPatchPositions()\n clip_list = clip_sources.copy()\n for item in clip_list:\n (ra, dec) = patches[item]\n dist_deg = s.getDistance(ra.value, dec.value, byPatch=True)\n if any(dist_deg * 60.0 < 6.0):\n for index in numpy.where(dist_deg * 60 < tolerance_arcmin)[0]:\n patch_name = s.getPatchNames()[index]\n if patch_name in demix_sources:\n clip_sources.remove(item)\n\n## set demix to false again in case all sources have been deselected\nif len(demix_sources) == 0:\n demix = 0\n\nprint(\"Demixing will use the following parameters if not specified otherwise by the user:\", parameters)\nprint(\"The following sources will be demixed: \", demix_sources)\nprint(\"The following sources will be clipped: \", clip_sources)\n\n\ncwl_output = {'demix_sources' : demix_sources,\n 'clip_sources' : clip_sources,\n 'demix' : demix,\n 'demix_timeres' : parameters['demixtimeresolution'],\n 'demix_freqres' : str(parameters['demixfreqresolution'] * 10**(-3))+\"kHz\",\n 'demix_maxiter' : parameters['maxiter'],\n 'lbfgs_historysize': parameters['lbfgs.historysize'],\n 'lbfgs_robustdof' : parameters['lbfgs.robustdof']}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "check_demix.py" ] ] ; cwl:stderr "check_demix_err.log" ; cwl:stdout "check_demix.log" . cwl:source . rdfs:comment "Gives an indication on how strong is the ionosphere" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; sld:default 1e-02 ; sld:type xsd:float , sld:null . rdfs:comment "Solution table" ; sld:default "sol000/rotation000" ; sld:type xsd:string , sld:null . rdfs:label "sorttimesintofreqGroups" ; cwl:in , , , , , ; cwl:out , , , , , , ; cwl:run . sld:type xsd:boolean , sld:null . sld:default "set CORRECTED_DATA = CORRECTED_DATA - MODEL_DATA" . cwl:source . sld:default 0e+00 ; sld:type xsd:float , sld:null . a cwl:Workflow ; rdfs:label "imaging_subtract" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , ; cwl:outputs , , , ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] . rdfs:comment "Mask to add to the found one" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-c" ] ; sld:type cwl:File , sld:null . cwl:source . rdfs:comment "Solution interval in timesteps" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; sld:default 1 ; sld:type xsd:int , sld:null . cwl:source ; cwl:valueFrom "$(self+\"_lowres\")" . rdfs:comment "minimum fraction of unflagged data per band to continue" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--min_unflagged" ] ; sld:default 5e-01 ; sld:type xsd:float , sld:null . sld:type xsd:string , sld:null . cwl:source . rdfs:comment "List of directions to calibrate on" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . a cwl:Workflow ; rdfs:label "TEC'n'amp" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , ; cwl:outputs , , , , ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] . rdfs:label "merge_array_files_hires" ; cwl:in ; cwl:out ; cwl:run . sld:type xsd:int , sld:null . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . sld:default 0 . cwl:outputSource ; sld:type cwl:Directory . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean . sld:default true . cwl:source ; sld:default "directioniterative" . cwl:source . rdfs:comment "List of h5parm files" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:File ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default 1e+03 . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . cwl:source . sld:default 10 ; sld:type xsd:int , sld:null . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source . rdfs:comment "Provide a station list manually" ; sld:type xsd:string , sld:null . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source . rdfs:comment "If mode = resid, this sets the reference antenna for phase solutions,\n by default None.\n" ; sld:type xsd:string , sld:null . rdfs:comment "If true performs smoothing" ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; sld:default true ; sld:type sld:null , xsd:boolean . cwl:source . sld:default 10 ; sld:type xsd:int , sld:null . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . cwl:source . rdfs:comment "rms box size" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; sld:default "100,10" ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . cwl:outputSource ; sld:type cwl:File . cwl:source . sld:default "target" . cwl:source . cwl:source . cwl:pickValue "the_only_non_null" ; cwl:source . cwl:source ; cwl:valueFrom "$(self+\"_lowres\")" . sld:default "Dysco" . cwl:linkMerge "merge_flattened" ; cwl:source , , , , , , . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . sld:default true . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . rdfs:label "compare_station_list" ; cwl:in , ; cwl:out , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "check_unflagged_fraction*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:pickValue "the_only_non_null" ; cwl:source . sld:type xsd:int , sld:null . sld:default true . cwl:source . sld:default "sol000/tec000" . cwl:source ; cwl:valueFrom "$(self+\"amplitude\")" . cwl:source . cwl:source . sld:default 1 . rdfs:comment "Command with respect to the input task" ; cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(inputs.command+\"'\")" ] ; sld:type xsd:string . cwl:source ; cwl:valueFrom "$(self == \"LBA\" ? 1e-2 : 0.2e-3)" . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type cwl:Directory . sld:default false ; sld:type xsd:boolean , sld:null . cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--outfile" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--outfile" ] ; sld:default "flagged_fraction.png" ; sld:type xsd:string , sld:null . rdfs:label "concat_logfiles_losoto" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . sld:type cwl:Directory , cwl:File . sld:default "CORRECTED_DATA" . rdfs:label "createRMh5parm" ; cwl:in , , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . sld:default "time" , "freq" . cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; sld:type cwl:File . cwl:source . sld:default "time" , "freq" . sld:type xsd:boolean , sld:null . a cwl:CommandLineTool ; rdfs:label "find_flagged_antennas" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "-c" "import sys\nimport json\nfrom find_flagged_antennas import main as find_flagged_antennas\n\ninputs = json.loads(r'''$(inputs)''')\nh5parmfile = inputs['h5parmfile'][\"path\"]\nsolset = inputs['solset']\nsoltab = inputs['soltab']\nfilter_in = inputs['filter_in']\nbad_antennas_in = inputs['bad_antennas_in']\n\nflagged_ants = find_flagged_antennas(h5parmfile, solset = solset, soltab = soltab)['flagged_ants']\ncwl_output = {'filter': (filter_in + flagged_ants).lstrip(';'),\n 'bad_antennas': (bad_antennas_in + flagged_ants).lstrip(';')}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ) ; cwl:baseCommand ( "python3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "find_flagged_antennas_err.log" ; cwl:stdout "find_flagged_antennas.log" . cwl:source ; cwl:valueFrom "$(Math.round(self/2.e6) > 0 ? Math.round(self/2.e6) : 1)" . cwl:source . sld:default "LBA" ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).targetName)" ; cwl:loadContents true ] ; sld:type xsd:string . sld:default "unit" . sld:default 12 . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "flagged_fraction_antenna.json" ] ; cwl:outputBinding [ CommandOutputBinding:glob "flagged_fraction_antenna.json" ] ; cwl:outputBinding [ CommandOutputBinding:glob "flagged_fraction_antenna.json" ] ; cwl:outputBinding [ CommandOutputBinding:glob "flagged_fraction_antenna.json" ] ; cwl:outputBinding [ CommandOutputBinding:glob "flagged_fraction_antenna.json" ] ; sld:type cwl:File . cwl:source . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:label "concat_logfiles_calib_targ1" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:linkMerge "merge_flattened" ; cwl:source , , . sld:default "ant" . cwl:outputSource ; cwl:pickValue "the_only_non_null" ; sld:type cwl:Directory . cwl:source . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . rdfs:label "concat_logfiles_large" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . rdfs:comment "Data column of the MeasurementSet\nfrom which input data is read.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "DATA" ; sld:type xsd:string , sld:null . rdfs:label "concat_logfiles_dp3concat" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "Input Measurement Set" ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "Minimum number of visibilities within a solution interval" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type xsd:float , sld:null . a cwl:CommandLineTool ; rdfs:label "make_beam_reg" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "make_beam_reg.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , ; cwl:stderr "make_beam_reg.log" ; cwl:stdout "make_beam_reg_err.log" . cwl:source ; cwl:valueFrom "$(self+'000')" . cwl:source . rdfs:comment "Input data Column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "DATA" ; sld:type xsd:string . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "" ; sld:type xsd:string , sld:null . cwl:valueFrom "$(1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) < 1 ? false : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) > 10 ? 10 : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)))" ; sld:default "getFWHM/fwhm" . cwl:source . cwl:source . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default 5e+06 . rdfs:label "predict_hires" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . sld:default "pointing" ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(\"BLsmooth\"+self)" . sld:type xsd:int , sld:null . cwl:source . sld:type xsd:float , sld:null . cwl:in , , , , , ; cwl:out , ; cwl:run . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "merge_skymodels*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:source . cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . sld:default "GSM" ; sld:type xsd:string , sld:null . cwl:source . cwl:source . cwl:outputSource ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "Tables to “add” (e.g. ‘sol000/tec000’), it works only for tec and clock\n to be added to phases.\n" ; sld:type xsd:string , sld:null . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "ddecal_err.log" ; cwl:stdout "ddecal.log" . sld:default true ; sld:type xsd:boolean , sld:null . sld:default true . sld:default true . rdfs:label "corrupt_model" ; cwl:in , , , ; cwl:out , ; cwl:run ; cwl:scatter ( ) . cwl:source . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . rdfs:comment "maximum amount of threads to be used for processing" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . cwl:outputSource ; sld:type cwl:File . cwl:outputSource ; cwl:pickValue "the_only_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; sld:default 1e+15 ; sld:type xsd:float , sld:null . sld:default "pol" . rdfs:label "compare_station_list" ; cwl:in , , , ; cwl:out , ; cwl:run . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . sld:default 1.2e+08 . rdfs:comment "Dictionary that contains the flagged fraction per station" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; sld:type xsd:string . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote true ; cwl:valueFrom "$(self)" ] ; sld:type xsd:string , sld:null . cwl:source . cwl:source . cwl:source . cwl:source . sld:default true . cwl:source . sld:default "40asec" . cwl:source . cwl:source . rdfs:label "concat_logfiles_wsclean" ; cwl:in , ; cwl:out ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:int , xsd:boolean . rdfs:label "concat_logfiles_image_target" ; cwl:in , ; cwl:out ; cwl:run . sld:default true . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.writefullresflag=True" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean . sld:default "ph_" . cwl:source . sld:default "time" , "freq" . sld:default "SMOOTHED_DATA" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:type xsd:string . cwl:source . sld:default "inspection" . sld:default 16 ; sld:type xsd:int , sld:null . sld:default "unit" . cwl:linkMerge "merge_flattened" ; cwl:outputSource , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.sourcedb=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory , cwl:File . a cwl:ExpressionTool ; rdfs:label "merge_array" ; ns1:original_cwlVersion "v1.2" ; ExpressionTool:expression "${\n var out_dir = []\n for(var i=0; i ; cwl:outputs ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] . a cwl:CommandLineTool ; rdfs:label "plot_flagged_fraction_freq" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "plot_flagged_fraction_freq.py" ) ; cwl:baseCommand ( "plot_flagged_fraction_freq.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , ; cwl:outputs . sld:default 2e-01 . cwl:source ; cwl:valueFrom "$(self+\"_hires\")" . rdfs:label "calib_targ2" ; cwl:in , , , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run . cwl:outputSource ; sld:type cwl:File . sld:default true ; sld:type xsd:boolean , sld:null . rdfs:comment "arrive to the first null, not the FWHM" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--tonull" ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "MODEL_DATA" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . cwl:source . sld:default "ant" . rdfs:comment "Type of correction to perform. When using H5Parm, this is for now the name of the soltab; the type will be deduced from the metadata in that soltab, except for full Jones, in which case correction should be 'fulljones'.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; sld:default "gain" ; sld:type xsd:string . sld:type xsd:boolean , sld:null . sld:default 1e-03 . sld:default "time" , "freq" . sld:default "skymodels" . rdfs:label "apply_gsmcal" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run ; cwl:scatter ( ) . a cwl:CommandLineTool ; rdfs:label "check_Ateam_separation" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "check_Ateam_separation.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:InlineJavascriptRequirement ] ; cwl:inputs , , ; cwl:outputs , , ; cwl:stdout "Ateam_separation.log" . rdfs:comment "how to combine multiple regions with AND or OR" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--operation" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--operation" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--operation" ] ; sld:default "AND" ; sld:type xsd:string , sld:null . sld:type xsd:int , sld:null . rdfs:comment "Output MS" ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:type xsd:boolean , sld:null . sld:default "ant" . cwl:in , , , , ; cwl:out , ; cwl:run . cwl:source . rdfs:label "losoto_plot_gsm_Pd" ; cwl:in , , , , , , , , ; cwl:out , , ; cwl:run . sld:default "CORRECTED_DATA" . sld:default 1e-30 ; sld:type xsd:float , sld:null . cwl:outputSource ; sld:type cwl:File . sld:default "target" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$(Math.round(self/2.e6) > 0 ? Math.round(self/2.e6) : 1)" . sld:default -1.6e+00 , 1.6e+00 . cwl:source . cwl:outputSource ; sld:type cwl:File . cwl:source . cwl:source . sld:type cwl:File , sld:null . sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(self+\"_mask\")" . rdfs:label "predict_lowres" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . sld:default "CORRECTED_DATA" . cwl:source . cwl:source , ; cwl:valueFrom "$(self.join('')+\"_final\")" . sld:default "CasA" , "CygA" ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default true . sld:default "time" . cwl:source . sld:default true . sld:default "15asec" . rdfs:label "concat_logfiles_summary" ; cwl:in , ; cwl:out ; cwl:run . sld:default 2000 . sld:default true . cwl:source . sld:default true . cwl:source . sld:default "ph_" . sld:default "ant" . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . sld:default "sol000/phase000" . sld:type cwl:File . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "flagtransfer.source_ms=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "flagtransfer.source_ms=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory , sld:null . sld:type sld:null ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . cwl:pickValue "the_only_non_null" ; cwl:source . cwl:source . sld:default -5e-01 , 5e-01 . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "python3" "compare_station_list.py" ) ; cwl:baseCommand ( "python3" "compare_station_list.py" ) ; cwl:baseCommand ( "python3" "compare_station_list.py" ) ; cwl:baseCommand ( "python3" "compare_station_list.py" ) ; cwl:baseCommand ( "python3" "compare_station_list.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "null = None\nimport sys\nimport json\nfrom compareStationList import main as compareStationList\n\nmss = sys.argv[1:]\ninputs = json.loads(r'''$(inputs)''')\nif inputs['h5parmdb']:\n h5parmdb = inputs['h5parmdb']['path']\nelse:\n h5parmdb = None\nsolset_name = inputs['solset_name']\nfilter_in = inputs['filter_in']\nstation_list = inputs['station_list']\n\noutput = compareStationList(mss, h5parmdb, solset_name, filter_in, station_list)\n\nfilter_out = output['filter']\nmatch_out = output['match']\ncwl_output = {'filter_out': filter_out, 'match_out': match_out}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "compare_station_list.py" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ cwl:entry "null = None\nimport sys\nimport json\nfrom compareStationList import main as compareStationList\n\nmss = sys.argv[1:]\ninputs = json.loads(r'''$(inputs)''')\nif inputs['h5parmdb']:\n h5parmdb = inputs['h5parmdb']['path']\nelse:\n h5parmdb = None\nsolset_name = inputs['solset_name']\nfilter_in = inputs['filter_in']\nstation_list = inputs['station_list']\n\noutput = compareStationList(mss, h5parmdb, solset_name, filter_in, station_list)\n\nfilter_out = output['filter']\nmatch_out = output['match']\ncwl_output = {'filter_out': filter_out, 'match_out': match_out}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "compare_station_list.py" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "null = None\nimport sys\nimport json\nfrom compareStationList import main as compareStationList\n\nmss = sys.argv[1:]\ninputs = json.loads(r'''$(inputs)''')\nif inputs['h5parmdb']:\n h5parmdb = inputs['h5parmdb']['path']\nelse:\n h5parmdb = None\nsolset_name = inputs['solset_name']\nfilter_in = inputs['filter_in']\nstation_list = inputs['station_list']\n\noutput = compareStationList(mss, h5parmdb, solset_name, filter_in, station_list)\n\nfilter_out = output['filter']\nmatch_out = output['match']\ncwl_output = {'filter_out': filter_out, 'match_out': match_out}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "compare_station_list.py" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ cwl:entry "null = None\nimport sys\nimport json\nfrom compareStationList import main as compareStationList\n\nmss = sys.argv[1:]\ninputs = json.loads(r'''$(inputs)''')\nif inputs['h5parmdb']:\n h5parmdb = inputs['h5parmdb']['path']\nelse:\n h5parmdb = None\nsolset_name = inputs['solset_name']\nfilter_in = inputs['filter_in']\nstation_list = inputs['station_list']\n\noutput = compareStationList(mss, h5parmdb, solset_name, filter_in, station_list)\n\nfilter_out = output['filter']\nmatch_out = output['match']\ncwl_output = {'filter_out': filter_out, 'match_out': match_out}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "compare_station_list.py" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "null = None\nimport sys\nimport json\nfrom compareStationList import main as compareStationList\n\nmss = sys.argv[1:]\ninputs = json.loads(r'''$(inputs)''')\nif inputs['h5parmdb']:\n h5parmdb = inputs['h5parmdb']['path']\nelse:\n h5parmdb = None\nsolset_name = inputs['solset_name']\nfilter_in = inputs['filter_in']\nstation_list = inputs['station_list']\n\noutput = compareStationList(mss, h5parmdb, solset_name, filter_in, station_list)\n\nfilter_out = output['filter']\nmatch_out = output['match']\ncwl_output = {'filter_out': filter_out, 'match_out': match_out}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "compare_station_list.py" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "compareStationList_err.log" ; cwl:stdout "compareStationList.log" . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source ; cwl:valueFrom "$(self.basename.split('.')[0])_wsclean.ms" . rdfs:comment "Step size in frequency for subsequent plotting\n" ; sld:type sld:null ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] . sld:type cwl:File . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).unflagged_fraction)" ; cwl:loadContents true ] ; sld:type xsd:float . sld:default "DATA" . rdfs:label "losoto_plot_tec2" ; cwl:in , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . rdfs:comment "h5parm output" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.h5parm.basename)" ] ; sld:type cwl:File . sld:type xsd:string . cwl:source . rdfs:label "concat_logfiles_plot_demix" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.demix)" . cwl:source . sld:default true . cwl:inputBinding [ CommandLineBinding:prefix "--inmodel1=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "$LINC_DATA_ROOT/skymodels/A-Team.skymodel" ; sld:type cwl:File , xsd:string , sld:null . cwl:source . sld:default -1e+00 ; sld:type xsd:float , sld:null . cwl:source . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . sld:default "" . sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(self > 25e6 ? 5 : Math.round(self/2.e6) > 1 ? 3 : false)" . sld:default "phase000" . sld:default true . rdfs:comment "Maximum number of iterations" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; sld:default 50 ; sld:type xsd:int , sld:null . sld:default true . sld:default 3e+06 . sld:default "CORRECTED_DATA" . sld:type xsd:float , sld:null . cwl:source . a cwl:CommandLineTool ; rdfs:label "define_parset" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "cat" "input.parset" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "steps = [filter,count1,$(inputs.raw_data?'flagedge,aoflag,':'')flagbaseline,flagelev,flagamp,$(inputs.demix?'demix,':'')applyPA,applybandpass,$(inputs.apply_clock_correction?'applyclock,':'')$(inputs.apply_phase_correction?'applyphase,':'')$(inputs.apply_beam_correction?'applybeam,':'')$(inputs.apply_rm_correction?'applyRM,':'')$(inputs.apply_tec_correction?'applytec,':'')avg,count2]\n#\nmsout.storagemanager = \"Dysco\"\nmsout.storagemanager.databitrate = $(inputs.databitrate)\n#\ncount1.type = counter\ncount2.type = counter\n#\nfilter.type = filter\nfilter.baseline = $(inputs.filter_baselines)\nfilter.remove = true\n#\nflagedge.type = preflagger\nflagedge.chan = [0..nchan/32-1,31*nchan/32..nchan-1]\n#\naoflag.type = aoflagger\naoflag.memoryperc = $(inputs.memoryperc)\naoflag.keepstatistics = false\n#\nflagbaseline.type = preflagger\nflagbaseline.baseline = $(inputs.baselines_to_flag)\n#\nflagelev.type = preflagger\nflagelev.elevation = $(inputs.elevation_to_flag)\n#\nflagamp.type = preflagger\nflagamp.amplmin = $(inputs.min_amplitude_to_flag)\n#\napplyPA.type = applycal\napplyPA.correction = polalign\napplyPA.solset = calibrator\n#\napplybandpass.type = applycal\napplybandpass.correction = bandpass\napplybandpass.updateweights = $(inputs.updateweights?'True':'False')\napplybandpass.solset = calibrator\n#\napplyclock.type = applycal\napplyclock.correction = clock\napplyclock.solset = calibrator\n#\napplytec.type = applycal\napplytec.correction = tec\napplytec.solset = calibrator\n#\napplyphase.type = applycal\napplyphase.correction = phaseOrig\napplyphase.solset = calibrator\n#\napplyRM.type = applycal\napplyRM.correction = spinifex\napplyRM.solset = target\n#\napplybeam.type = applybeam\napplybeam.usechannelfreq = True\napplybeam.updateweights = $(inputs.updateweights?'True':'False')\napplybeam.invert = True\napplybeam.beammode = element\n#\navg.type = average\navg.timeresolution = $(inputs.timeresolution)\navg.freqresolution = $(inputs.freqresolution)\n#\ndemix.type = demixer\ndemix.baseline = $(inputs.process_baselines_target)\ndemix.demixfreqresolution = $(inputs.demix_freqres)\ndemix.demixtimeresolution = $(inputs.demix_timeres)\ndemix.ignoretarget = False\ndemix.targetsource = $(inputs.target_source)\ndemix.subtractsources = $(inputs.subtract_sources)\ndemix.ntimechunk = $(inputs.ntimechunk)\ndemix.freqstep = 1\ndemix.timestep = 1\ndemix.instrumentmodel = demix_solutions\ndemix.uselbfgssolver = True\ndemix.lbfgs.historysize = $(inputs.lbfgs_historysize)\ndemix.lbfgs.robustdof = $(inputs.lbfgs_robustdof)\ndemix.maxiter = $(inputs.demix_maxiter)\ndemix.lbfgs.solution.range = [-10000,10000]\n\n" ; cwl:entryname "input.parset" ] ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stdout "DP3.parset" . sld:default "ant" . sld:default -3.14e+00 , 3.14e+00 . cwl:source . sld:default "sol000/phase000" . sld:default 1e+02 . cwl:outputSource , ; cwl:pickValue "first_non_null" ; sld:type cwl:Directory . sld:default "target" . sld:default 1e+00 . cwl:pickValue "the_only_non_null" ; cwl:source . sld:type xsd:string , sld:null . cwl:source . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source , , . sld:default true . a cwl:CommandLineTool ; rdfs:label "getFWHM" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( [ CommandLineBinding:position 0 ; cwl:valueFrom "getFWHM.py" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; cwl:valueFrom "getFWHM.py" ] ) ; cwl:baseCommand ( "python3" ) ; cwl:baseCommand ( "python3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "import sys\nimport json\nimport numpy\nfrom casacore import tables\n\ninputs = json.loads(r'''$(inputs)''')\nbeamfreq = inputs['beamfreq']\nms_list = sys.argv[1:]\n\n# Following numbers are based at 60 MHz (old.astron.nl/radio-observatory/astronomers/lofar-imaging-capabilities-sensitivity/lofar-imaging-capabilities/lofa)\n\nwith tables.table(ms_list[0]+'/OBSERVATION', ack = False) as t:\n antenna_set = t.getcell(\"LOFAR_ANTENNA_SET\",0)\nscale = 60e6/beamfreq\n\nif 'HBA' in antenna_set:\n fwhm = 10.0\nelif 'OUTER' in antenna_set:\n fwhm = 3.88 * scale\nelif 'SPARSE' in antenna_set:\n fwhm = 4.85 * scale\nelif 'INNER' in antenna_set:\n fwhm = 9.77 * scale\n\ncwl_output = {'FWHM': fwhm}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n \n" ; cwl:entryname "getFWHM.py" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "import sys\nimport json\nimport numpy\nfrom casacore import tables\n\ninputs = json.loads(r'''$(inputs)''')\nbeamfreq = inputs['beamfreq']\nms_list = sys.argv[1:]\n\n# Following numbers are based at 60 MHz (old.astron.nl/radio-observatory/astronomers/lofar-imaging-capabilities-sensitivity/lofar-imaging-capabilities/lofa)\n\nwith tables.table(ms_list[0]+'/OBSERVATION', ack = False) as t:\n antenna_set = t.getcell(\"LOFAR_ANTENNA_SET\",0)\nscale = 60e6/beamfreq\n\nif 'HBA' in antenna_set:\n fwhm = 10.0\nelif 'OUTER' in antenna_set:\n fwhm = 3.88 * scale\nelif 'SPARSE' in antenna_set:\n fwhm = 4.85 * scale\nelif 'INNER' in antenna_set:\n fwhm = 9.77 * scale\n\ncwl_output = {'FWHM': fwhm}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n \n" ; cwl:entryname "getFWHM.py" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "getFWHM_err.log" ; cwl:stdout "getFWHM.log" . sld:default 1e+02 . rdfs:label "concat_logfiles_calib" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.selfcal_strategy == 'HBA')" . rdfs:label "concat_logfiles_dp3" ; cwl:in , ; cwl:out ; cwl:run . rdfs:label "selfcal_target_lba" ; cwl:in , , , , , , , , , , , , , , , , , , , , ; cwl:out , , , , , ; cwl:run ; cwl:when "$(inputs.execute && inputs.selfcal_strategy == 'LBA')" . cwl:source . cwl:source . rdfs:comment "Solution table" ; sld:type xsd:string . cwl:source . cwl:source . rdfs:comment "Add this step-name into the file-names of the output files." ; sld:default ".ms" ; sld:type xsd:string , sld:null . cwl:source . cwl:source . cwl:source . cwl:source . cwl:source . sld:type xsd:int , sld:null . rdfs:label "plot_Ateamclipper" ; cwl:in , , , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . sld:default false . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source . sld:default "ph_poldif" . sld:type xsd:int , sld:null . cwl:source . rdfs:label "check_filtered_MS_array" ; cwl:in ; cwl:out ; cwl:run . sld:default "ant" . cwl:source . sld:default 30 ; sld:type xsd:int , sld:null . cwl:outputSource ; sld:type cwl:File . cwl:source . cwl:source . rdfs:label "concat_logfiles_apply_targ" ; cwl:in , ; cwl:out ; cwl:run . sld:type cwl:File . cwl:source . sld:default "CORRECTED_DATA" . sld:default "faraday" . rdfs:comment "Maximum number of iterations" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; sld:default 50 ; sld:type xsd:int , sld:null . rdfs:comment "Axes along which compute the normalization" ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default true . rdfs:comment "Input measurement set" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:shellQuote false ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "When unequal to 0, all stations within the given distance from the reference station (0) will be constrained to have the same solution (in metres)" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type sld:null , xsd:float . rdfs:comment "List of MS for UV-plotting" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ] ; sld:type cwl:Directory ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$(\"slow\"+self+\"tec1\")" . cwl:source . cwl:pickValue "the_only_non_null" ; cwl:source . sld:default 5e+07 ; sld:type xsd:float , sld:null . cwl:source ; cwl:valueFrom "$(self[0])" . cwl:outputBinding [ CommandOutputBinding:glob "$(runtime.outdir)/cwl.output.json" ; CommandOutputBinding:outputEval "$(self.selected_ms)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(runtime.outdir)/cwl.output.json" ; CommandOutputBinding:outputEval "$(self.selected_ms)" ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solveralgorithm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solveralgorithm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solveralgorithm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solveralgorithm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solveralgorithm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solveralgorithm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solveralgorithm=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . sld:default "" ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(self+\"_blank2.fits\")" . sld:default 2 . rdfs:comment "Minimum number of visibilities within a solution interval" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type xsd:float , sld:null . sld:default -3.14e+00 , 3.14e+00 . sld:default 10 ; sld:type xsd:int , sld:null . sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . a cwl:Workflow ; rdfs:label "corrupt_model" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , ; cwl:outputs , . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[filter,applycal,count]" ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , , , ; cwl:outputs , , , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:stderr "applycal_$(inputs.correction)_err.log" ; cwl:stdout "applycal_$(inputs.correction).log" . sld:default "target" . sld:default "check_unflagged_fraction" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applyclock.parmdb=" ; CommandLineBinding:separate false ; cwl:valueFrom "$(inputs.solutions.path)" ] ; sld:default true ; sld:type xsd:boolean , sld:null . sld:default "target" . rdfs:label "h5parm_collector_gsm" ; cwl:in , , , ; cwl:out , ; cwl:run . sld:type xsd:int , sld:null . cwl:source . sld:default "sol000/phase000" . cwl:source . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Split the I/O in n chunks. If you run out of memory, set this to a value > 2." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; sld:default 8 ; sld:type sld:null , xsd:int . sld:default true . rdfs:comment "Output JSON" ; cwl:outputBinding [ CommandOutputBinding:glob "*.json" ] ; sld:type cwl:File . cwl:source . sld:default false ; sld:type xsd:boolean , sld:null . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; sld:type sld:null , xsd:int . rdfs:label "concat_logfiles_clipper_targ" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . rdfs:label "corrupt_tec" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . sld:default "CS001LBA" ; sld:type xsd:string , sld:null . sld:default true . cwl:source . cwl:source . cwl:source . sld:type cwl:File . rdfs:label "concat_logfiles_stationlist" ; cwl:in , ; cwl:out ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "DATA" ; sld:type xsd:string , sld:null . sld:default 1e+00 . cwl:source . rdfs:comment "Output MS" ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:default "time" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:label "BLsmooth1" ; cwl:in , , , ; cwl:out , ; cwl:run . sld:default "CS001LBA" ; sld:type xsd:string , sld:null . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . sld:type xsd:int , sld:null . sld:default 4 . cwl:source . rdfs:comment "An optional reference frequency (in Hz) for the smoothness constraint" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type xsd:float , sld:null . cwl:source . cwl:source . sld:default true . rdfs:comment "Number of channels in each channel block, for which the solution is assumed to be constant." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; sld:default 1 ; sld:type xsd:int , sld:null . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; sld:default "sol000" ; sld:type xsd:string , sld:null . cwl:source . sld:default "apply_targ_amp_1" . cwl:source . cwl:source . cwl:source . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "filter.remove=True" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "make_mask" ; cwl:in , , , , ; cwl:out , ; cwl:run . cwl:source . sld:type xsd:boolean , sld:null . cwl:outputSource ; sld:type xsd:string . cwl:source ; cwl:valueFrom "$(self+\"_mask\")" . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:default "time" , "freq" . cwl:source , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:valueFrom "'$({\n \"msin\": self[0].map(function(directory){ return directory.location.replace(\"file://\",\"\"); }),\n \"cal_solutions\": self[1].location.replace(\"file://\",\"\"),\n \"refant\": self[2],\n \"flag_baselines\": self[3],\n \"process_baselines_target\": self[4],\n \"filter_baselines\": self[5],\n \"do_smooth\": self[6],\n \"rfistrategy\": self[7],\n \"min_unflagged_fraction\": self[8],\n \"compression_bitrate\": self[9],\n \"raw_data\": self[10],\n \"propagatesolutions\": self[11],\n \"apply_tec\": self[12],\n \"apply_clock\": self[13],\n \"apply_phase\": self[14],\n \"apply_RM\": self[15],\n \"get_RM\": self[16],\n \"apply_beam\": self[17],\n \"demix_sources\": self[18],\n \"demix_freqres\": self[19],\n \"demix_timeres\": self[20],\n \"demix_maxiter\": self[21],\n \"demix\": self[22],\n \"updateweights\": self[23],\n \"max_dp3_threads\": self[24],\n \"memoryperc\": self[25],\n \"min_separation\": self[26],\n \"use_dnn\": self[27],\n \"A-Team_skymodel\": self[28],\n \"target_skymodel\": self[29],\n \"use_target\": self[30],\n \"skymodel_source\": self[31],\n \"avg_timeresolution\": self[32],\n \"avg_freqresolution\": self[33],\n \"avg_timeresolution_concat\": self[34],\n \"avg_freqresolution_concat\": self[35],\n \"num_SBs_per_group\": self[36],\n \"calib_nchan\": self[37],\n \"reference_stationSB\": self[38],\n \"clip_sources\": self[39],\n \"clipAteam\": self[40],\n \"gsmcal_step\": self[41],\n \"lbfgs_historysize\": self[42],\n \"lbfgs_robustdof\": self[43],\n \"aoflag_reorder\": self[44],\n \"aoflag_chunksize\": self[45],\n \"aoflag_freqconcat\": self[46],\n \"selfcal\": self[47],\n \"selfcal_strategy\": self[48],\n \"selfcal_hba_imsize\": self[49],\n \"selfcal_region\": self[50],\n \"chunkduration\": self[51],\n \"wsclean_tmpdir\": self[52],\n \"make_structure_plot\": self[53],\n \"skymodel_fluxlimit\": self[54],\n \"hba_uvlambdamin\": self[55],\n \"hba_uvmmax\": self[56],\n \"output_fullres_data\": self[57],\n \"maxStddev\": self[58],\n \"solveralgorithm\": self[59]\n })'\n" . sld:default true ; sld:type xsd:boolean , sld:null . rdfs:comment "Add dummy file-names for missing frequencies, so that DP3 can fill the data with flagged dummy data." ; sld:default true ; sld:type xsd:boolean , sld:null . sld:default false ; sld:type xsd:boolean , sld:null . sld:default "1.5asec" . rdfs:comment "Join all SPWs together in frequency direction before flagging" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-combine-spws" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-combine-spws" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outmodel)" ] ; sld:type cwl:File . cwl:source . sld:default true . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count1.savetojson=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . sld:type cwl:File . rdfs:comment "The files containing the stdout\nand stderr from the step.\n" ; cwl:outputBinding [ CommandOutputBinding:glob "clipper*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:label "tec_and_amp_2" ; cwl:in , , , , , , , , , , , , , ; cwl:out , , , , ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--wideband True" ; CommandLineBinding:shellQuote false ] ; sld:default true ; sld:type xsd:boolean , sld:null . sld:default "sol000/phase000" . cwl:source . cwl:inputBinding [ CommandLineBinding:prefix "msout.overwrite=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:outputSource ; sld:type cwl:File . sld:default -1.6e+00 , 1.6e+00 . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; sld:default "36asec" ; sld:type xsd:string , sld:null . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:type xsd:string , sld:null . sld:default "losoto_gsmcal_final" . sld:default "replace" . sld:default "[CR]*&&" . sld:default "sol000/amplitudeSmooth" . rdfs:label "getFWHM" ; cwl:in , ; cwl:out , ; cwl:run . cwl:linkMerge "merge_flattened" ; cwl:outputSource , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "ant" . cwl:outputSource ; sld:type cwl:File . rdfs:label "losoto_plot_phase2" ; cwl:in , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . rdfs:comment "A cell value in axisReplicate from which to copy the data values." ; sld:type xsd:string , sld:null . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source , , , , , . cwl:source . sld:default 0 . cwl:source . rdfs:label "merge_array_files_amp_2" ; cwl:in ; cwl:out ; cwl:run . sld:default "97.64kHz" ; sld:type xsd:string , sld:null . rdfs:comment "Output h5parm" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.h5parmFile.basename)" ] ; sld:type cwl:File . sld:default true ; sld:type xsd:boolean , sld:null . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean , xsd:int . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . sld:type xsd:boolean , sld:null . rdfs:comment "Antenna string to be processed" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--bad_antennas" ] ; sld:default "*&" ; sld:type xsd:string , sld:null . cwl:source . rdfs:comment "Minimum allowable fraction of new flagged frequencies. Stations with\nlower fractions will not have any new flags applied\n" ; sld:type xsd:float , sld:null . sld:default "TGSS" ; sld:type xsd:string , sld:null . rdfs:label "tec_and_amp" ; cwl:in , , , , , , , , , , , , , ; cwl:out , , , , ; cwl:run . sld:default "" ; sld:type xsd:string , sld:null . rdfs:label "losoto_plot_gsm_P2" ; cwl:in , , , , , , , , , ; cwl:out , , ; cwl:run . sld:default 0 . sld:default true . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "If WEIGHT_SPECTRUM_ORIG exists then restore it before smoothing" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(\"ph_\"+self+\"_poldif_\")" . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "find_skymodel_target.log" ] ; sld:type cwl:File . cwl:source . sld:default 50 ; sld:type xsd:float , sld:null . cwl:source . sld:default 30 . cwl:source . cwl:source . rdfs:comment "Tolerance at which the approximating first stage is considered to be converged and the second full-constraining stage is started." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; sld:type xsd:float , sld:null . sld:default 10 ; sld:type xsd:int , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).match_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).match_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).match_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).match_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).match_out)" ; cwl:loadContents true ] ; sld:type xsd:string . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . rdfs:label "concat_logfiles_losoto_tec1" ; cwl:in , ; cwl:out ; cwl:run . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 0 ? Math.round(self/4.e6) : 1)" . cwl:source . cwl:outputSource ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "-c" "import sys\nimport json\nfrom getTargetName import main as getTargetName\n\nmss = sys.argv[1:]\n\noutput = getTargetName(mss)\n\ntargetName = output['targetName'].lstrip().rstrip().replace(' ','')\ncwl_output = {'targetName': targetName}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n \n" ) ; cwl:baseCommand ( "python3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "get_targetname_err.log" ; cwl:stdout "get_targetname.log" . sld:default 16 ; sld:type xsd:int , sld:null . sld:default 8 ; sld:type xsd:int , sld:null . cwl:outputSource ; sld:type xsd:float . sld:default true . rdfs:comment "Baselines to be selected" ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . sld:default "1" . rdfs:comment "Uses an approximation stage in which the phases are constrained with the piece-wise fitter, to solve local minima problems." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:comment "Threshold pixel" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-p" ] ; sld:default 5 ; sld:type xsd:int , sld:null . cwl:source . sld:default 2500 . rdfs:label "concat_logfiles_apply_targ1" ; cwl:in , ; cwl:out ; cwl:run . sld:default "calib_targ_amp" . sld:default true . rdfs:comment "output region file" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outfile)" ] ; sld:type cwl:File . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.save=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:comment "Output image" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outputimage)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outputimage)" ] ; sld:type cwl:File . cwl:source . sld:type cwl:File . sld:type xsd:string , sld:null . rdfs:comment "Filter these baselines for the comparison" ; sld:default "*&" ; sld:type xsd:string , sld:null . sld:default "array_factor" . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:label "losoto_plot_Pd2" ; cwl:in , , , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . rdfs:comment "Reference antenna for phases. By default None.\n" ; sld:default "" ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(Math.round(self/1e7) > 1 ? (Math.round(self/1e7) > 3 ? 3 : Math.round(self/1e7)) : false )" . rdfs:comment "What storage manager to use." ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string , sld:null . sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "merge_array" ; cwl:in ; cwl:out ; cwl:run . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . cwl:source . cwl:source . rdfs:label "concat_logfiles_spinifex" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . sld:default true . cwl:source . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$(self+'_structure.png')" . cwl:source . rdfs:comment "Do not smooth in time" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:type xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . sld:default "time" , "freq" . sld:default "Ateamclipper" . cwl:outputSource , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:type xsd:boolean , sld:null . cwl:source . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . cwl:source . sld:default 3e+00 . a cwl:Workflow ; rdfs:label "dp3_prep_targ" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , , , , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:StepInputExpressionRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] . rdfs:comment "Flag unconverged solutions (i.e., those from solves that did not converge\nwithin maxiter iterations).\n" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.input_file)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.input_file)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.input_file)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.input_file)" ] ; sld:type cwl:File . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source , , , , , , , . sld:type xsd:boolean , sld:null . cwl:source . cwl:in , , , , , , , , , ; cwl:out , , , ; cwl:run . cwl:source . cwl:source . sld:default "ph_poldif" . sld:default true ; sld:type xsd:boolean , sld:null . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . sld:default 0 . a cwl:CommandLineTool ; rdfs:label "H5parm_collector" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "$(inputs.outh5parmname)-parm_collector_output_err.log" ; cwl:stdout "$(inputs.outh5parmname)-parm_collector_output.log" . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:comment "List of model data to be reused from previous (ddecal) step(s). The list should contain the model data names, as set by a previous step" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "list of bad antennas derived from this step (separated by semicolon), needs to adhere to baseline-selection syntax" ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).bad_antennas)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).bad_antennas)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).bad_antennas)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).bad_antennas)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).bad_antennas)" ; cwl:loadContents true ] ; sld:type xsd:string . sld:type xsd:boolean , sld:null . rdfs:comment "Fitting algorithm: bandpass or resid. Bandpass mode clips amplitudes\n relative to a model bandpass (only LOFAR is currently supported).\nResid mode clips residual phases or log(amplitudes).\n" ; sld:type [ sld:symbols , ; sld:type sld:enum ] . rdfs:comment "Output h5parm" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; sld:type cwl:File . rdfs:label "concat_logfiles_calib_targ" ; cwl:in , ; cwl:out ; cwl:run . sld:type xsd:string . sld:default true . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.sources=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self)]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default true . sld:type cwl:File . cwl:source ; cwl:valueFrom "$(self.basename)" . sld:default "MODEL_DATA" . sld:default "48.82kHz" ; sld:type xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:stderr "applycal_$(inputs.correction)_err.log" ; cwl:stdout "applycal_$(inputs.correction).log" . cwl:linkMerge "merge_flattened" ; cwl:source . sld:default "*&" ; sld:type xsd:string , sld:null . sld:default 2e+02 ; sld:type xsd:float , sld:null . cwl:source . rdfs:label "compare_station_list_R" ; cwl:in , , ; cwl:out ; cwl:run . rdfs:comment "Input Measurement Set string (including dummy.ms)" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "time" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.targetname).skymodel" ] ; sld:type cwl:File . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msout_name.split('.')[0])*" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msout_name.split('.')[0])*" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:outputSource ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default true . a cwl:ExpressionTool ; rdfs:label "check_filtered_MS_array" ; ns1:original_cwlVersion "v1.2" ; ExpressionTool:expression "${\n if (inputs.input.length == 0) {\n throw new Error(\"No MS files meet the minimum unflagged fraction set by min_unflagged_fraction\")\n } else {\n return {'output': inputs.input}\n }\n}\n" ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs ; cwl:outputs ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] . rdfs:comment "overwrite output" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; sld:default false ; sld:type xsd:boolean . sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(Math.round(self/1e7) > 1 ? (Math.round(self/1e7) > 3 ? 3 : Math.round(self/1e7)) : false )" . cwl:source . sld:default "MODEL_DATA" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; sld:default "pointing" ; sld:type xsd:string , sld:null , cwl:File . rdfs:comment "MS containing the target" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:type xsd:boolean , sld:null . sld:default 2 . rdfs:comment "maximum amount of threads to be used for processing" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . sld:type xsd:string , sld:null . sld:default "Ateamclipper" . cwl:source . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source . sld:default "log" ; sld:type xsd:string , sld:null . sld:default 8 . rdfs:comment "Input data Column" ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "DATA" ; sld:type xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string . cwl:source . sld:default false ; sld:type xsd:boolean , sld:null . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "maximum amount of threads to be used for processing" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . sld:default "time" . sld:default "DATA" . sld:default "target" . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . sld:default -3.14e+00 , 3.14e+00 . sld:default 5e+06 . sld:type xsd:boolean , sld:null . sld:default 4 . rdfs:comment "Provide state information for collecting antenna statistics" ; sld:default "NONE" ; sld:type xsd:string , sld:null . rdfs:comment "overwrite output" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; sld:default true ; sld:type xsd:boolean . sld:default "MODEL_DATA" . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msout_name==\".\"?inputs.msin.basename:inputs.msout_name)" ] ; sld:type cwl:Directory . rdfs:label "concat_logfiles_hires" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.apply_solutions_fullres)" . sld:default "initial" . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . rdfs:comment "Choose correlation to be plotted (XX,YY,XY,YX)\n" ; sld:type xsd:string , sld:null . cwl:source . sld:default "10arcsec" . a cwl:CommandLineTool ; rdfs:label "filter_ms_group" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( [ CommandLineBinding:position 0 ; cwl:valueFrom "filter_ms_group.py" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; cwl:valueFrom "filter_ms_group.py" ] ) ; cwl:baseCommand ( "python3" ) ; cwl:baseCommand ( "python3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.measurement_sets)" ] ] ; cwl:hints [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.measurement_sets)" ] ] ; cwl:inputs , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "import sys\nimport json\nimport os\n\ninputs = json.loads(r'''$(inputs)''')\ngroup_id = inputs['group_id']\njson_file = sys.argv[1]\nms_list = sys.argv[2:]\n\nms_by_name = { ms.split(os.path.sep)[-1]:\n {'class':'Directory', 'path': ms} for ms in ms_list}\n\nwith open(json_file, 'r') as f_stream:\n selected_ms = json.load(f_stream)[group_id]\n\nselected_ms = [os.path.basename(ms_name) for ms_name in selected_ms]\nselected_ms_names = [ms_by_name[ms_name] for ms_name in selected_ms\n if ms_name != 'dummy.ms']\ncwl_output = {'selected_ms': selected_ms,\n 'output': selected_ms_names}\n\nwith open('./cwl.output.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "filter_ms_group.py" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "import sys\nimport json\nimport os\n\ninputs = json.loads(r'''$(inputs)''')\ngroup_id = inputs['group_id']\njson_file = sys.argv[1]\nms_list = sys.argv[2:]\n\nms_by_name = { ms.split(os.path.sep)[-1]:\n {'class':'Directory', 'path': ms} for ms in ms_list}\n\nwith open(json_file, 'r') as f_stream:\n selected_ms = json.load(f_stream)[group_id]\n\nselected_ms = [os.path.basename(ms_name) for ms_name in selected_ms]\nselected_ms_names = [ms_by_name[ms_name] for ms_name in selected_ms\n if ms_name != 'dummy.ms']\ncwl_output = {'selected_ms': selected_ms,\n 'output': selected_ms_names}\n\nwith open('./cwl.output.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "filter_ms_group.py" ] ] ; cwl:stderr "filter_ms_by_group_err.log" ; cwl:stdout "filter_ms_by_group.log" . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "MODEL_DATA" ; sld:type xsd:string , sld:null . sld:default 1e+02 . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . sld:default 0e+00 ; sld:type xsd:float , sld:null . sld:default true . rdfs:comment "specifies a customized strategy\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-strategy" ; CommandLineBinding:separate true ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-strategy" ; CommandLineBinding:separate true ; CommandLineBinding:shellQuote false ] ; sld:default "$LINC_DATA_ROOT/rfistrategies/lofar-default.lua" ; sld:type cwl:File , xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.writefullresflag=True" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.writefullresflag=True" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "losoto_amplitude" ; cwl:in , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:outputSource ; sld:type cwl:File . cwl:source . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:type cwl:File . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string , sld:null . cwl:in , , ; cwl:out , ; cwl:run . cwl:source . cwl:source . cwl:pickValue "the_only_non_null" ; cwl:source . rdfs:label "concat_logfiles_calib_targ2" ; cwl:in , , ; cwl:out ; cwl:run . sld:default false ; sld:type xsd:boolean , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).lbfgs_robustdof)" ; cwl:loadContents true ] ; sld:type xsd:float . sld:default "sol000/phase000" . sld:default "" ; sld:type xsd:string , sld:null . sld:default "sol000/phase000" . cwl:source . cwl:source . cwl:in , , , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run . sld:default "sol000/phase000" . sld:default 5 . sld:default "target" . sld:default "recreate_model" . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . sld:type xsd:string , sld:null . sld:type xsd:boolean , sld:null . cwl:source . sld:default true . cwl:pickValue "first_non_null" ; cwl:source , . cwl:source . sld:default 1e+07 ; sld:type xsd:float , sld:null . cwl:source . a cwl:CommandLineTool ; rdfs:comment "Duplicate a table\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:baseCommand ( "losoto" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('DUPLICATE').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('DUPLICATE').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('DUPLICATE').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . sld:default "CS*" . sld:default "filter,average,count" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "demix.skymodel=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory , cwl:File . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default -1e+00 ; sld:type xsd:float , sld:null . sld:default "briggs -0.3" . cwl:outputSource ; sld:type cwl:Directory . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . sld:default true . rdfs:comment "Input Solution Set" ; sld:type cwl:File , sld:null . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . sld:default "48.82kHz" ; sld:type xsd:string , sld:null . sld:default 5e-01 . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ] ; sld:type cwl:File . sld:default "DATA" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--demix" ; CommandLineBinding:separate true ; CommandLineBinding:shellQuote false ] ; sld:default "False" ; sld:type xsd:string , sld:null . a cwl:CommandLineTool ; rdfs:label "plot_demix_noise_ratio" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "plot_demixing_noise.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , ; cwl:outputs , . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:type xsd:string . rdfs:label "write_solutions" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run . sld:type xsd:float , sld:null . sld:default "results" . sld:default 0 . rdfs:label "concat_logfiles_skymodels" ; cwl:in , ; cwl:out ; cwl:run . sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:outputSource ; cwl:pickValue "the_only_non_null" ; sld:type cwl:Directory . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source , , . a cwl:CommandLineTool ; rdfs:comment "Normalize the solutions to a given value WEIGHT: Weights compliant\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('NORM').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('NORM').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . rdfs:label "concat_logfiles_FR" ; cwl:in , ; cwl:out ; cwl:run . sld:type cwl:Directory , cwl:File .