digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 837 233 837 0 ",
		bb="0,0,837,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 9 170 9 225 704 225 704 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 59 213 0 84 15 -Workflow Inputs ",
			bb="9,170,704,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="59,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 533 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="533,188",
			rects="490,178.5,576,197.5",
			width=1.1944];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 121.5 178.5 121.5 197.5 214.5 197.5 214.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 168 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
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			label=male_reference,
			pos="168,188",
			rects="121.5,178.5,214.5,197.5",
			width=1.2917];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 218.5 178.5 218.5 197.5 291.5 197.5 291.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 255 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
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			label=tumor_bam,
			pos="255,188",
			rects="218.5,178.5,291.5,197.5",
			width=1.0139];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 17 178.5 17 197.5 117 197.5 117 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 67 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="67,188",
			rects="17,178.5,117,197.5",
			width=1.3889];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 580.5 178.5 580.5 197.5 637.5 197.5 637.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 609 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=diagram,
			pos="609,188",
			rects="580.5,178.5,637.5,197.5",
			width=0.79167];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 642 178.5 642 197.5 696 197.5 696 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 669 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="669,188",
			rects="642,178.5,696,197.5",
			width=0.75];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 296 178.5 296 197.5 370 197.5 370 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 333 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_plot,
			pos="333,188",
			rects="296,178.5,370,197.5",
			width=1.0278];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 374.5 178.5 374.5 197.5 485.5 197.5 485.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 430 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=drop_low_coverage,
			pos="430,188",
			rects="374.5,178.5,485.5,197.5",
			width=1.5417];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 829 63 829 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,829,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 309.5 35.5 309.5 54.5 440.5 54.5 440.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 375 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="375,45",
			rects="309.5,35.5,440.5,54.5",
			width=1.8194];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 444.5 35.5 444.5 54.5 593.5 54.5 593.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 519 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="519,45",
			rects="444.5,35.5,593.5,54.5",
			width=2.0694];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 597.5 35.5 597.5 54.5 688.5 54.5 688.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 643 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="643,45",
			rects="597.5,35.5,688.5,54.5",
			width=1.2639];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 693 35.5 693 54.5 821 54.5 821 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 757 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="757,45",
			rects="693,35.5,821,54.5",
			width=1.7778];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 83.5 54.5 83.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 50 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="50,45",
			rects="16.5,35.5,83.5,54.5",
			width=0.93056];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 87.5 35.5 87.5 54.5 226.5 54.5 226.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 157 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="157,45",
			rects="87.5,35.5,226.5,54.5",
			width=1.9306];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 231 35.5 231 54.5 305 54.5 305 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 268 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="268,45",
			rects="231,35.5,305,54.5",
			width=1.0278];
	}
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 336.5 125.5 336.5 144.5 413.5 144.5 413.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 375 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="375,135",
		rects="336.5,125.5,413.5,144.5",
		width=1.0694];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 7 526.39 178.76 519.48 170.76 507.84 158.97 495 153 472.23 142.41 444.61 138 421.61 136.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 422.01 133.88 414.88 135.89 421.71 138.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 538.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="538.5,157.5",
		pos="e,413.37,135.8 526.39,178.76 519.48,170.76 507.84,158.97 495,153 472.23,142.41 444.61,138 421.61,136.31"];
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 31.5 80.5 31.5 99.5 326.5 99.5 326.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 179 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="179,90",
		rects="31.5,80.5,326.5,99.5",
		width=4.0972];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 4 168.94 178.82 170.74 163.09 174.71 128.4 177.09 107.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 179.5 108.17 177.86 100.94 174.63 107.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 207 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="207,135",
		pos="e,178.03,99.438 168.94,178.82 170.74,163.09 174.71,128.4 177.09,107.63"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 10 178.66 178.7 189.62 170.65 207.51 158.82 225 153 257.23 142.27 267.25 148.83 301 145 309.86 143.99 319.31 142.88 \
328.4 141.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 328.45 144.25 335.1 140.97 327.86 139.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 257 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="257,157.5",
		pos="e,336.61,140.79 178.66,178.7 189.62,170.65 207.51,158.82 225,153 257.23,142.27 267.25,148.83 301,145 309.86,143.99 319.31,142.88 \
328.4,141.78"];
	tumor_bam -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 255.05 178.88 254.72 166.13 252.39 141.18 240 125 232.7 115.47 221.93 108.23 211.46 102.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 212.69 100.8 205.31 100.05 210.61 105.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 273 133.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="273,135",
		pos="e,203.94,99.409 255.05,178.88 254.72,166.13 252.39,141.18 240,125 232.7,115.47 221.93,108.23 211.46,102.93"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 7 265.55 178.57 275.64 170.89 291.58 159.74 307 153 313.88 149.99 321.39 147.45 328.83 145.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 329.26 147.74 335.38 143.56 327.99 143.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 330 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="330,157.5",
		pos="e,336.84,143.17 265.55,178.57 275.64,170.89 291.58,159.74 307,153 313.88,149.99 321.39,147.45 328.83,145.32"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 72.28 178.5 80.57 165.68 97.7 141.15 117 125 127.33 116.36 140.19 108.88 151.51 103.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 152.48 105.41 157.7 100.14 150.33 101 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 144.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="144.5,135",
		pos="e,159.06,99.478 72.28,178.5 80.571,165.68 97.701,141.15 117,125 127.33,116.36 140.19,108.88 151.51,103.15"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 602.02 178.61 594.72 170.5 582.45 158.62 569 153 543.32 142.27 470.45 138.31 421.7 136.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 421.77 134.4 414.71 136.65 421.63 139.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 600 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="600,157.5",
		pos="e,413.19,136.61 602.02,178.61 594.72,170.5 582.45,158.62 569,153 543.32,142.27 470.45,138.31 421.7,136.85"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 659.66 178.56 650.01 170.41 634.11 158.5 618 153 582.83 141 481.44 137.46 421.31 136.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 421.67 133.98 414.63 136.32 421.59 138.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 652 155.6 0 32 6 -method ",
		label=method,
		lp="652,157.5",
		pos="e,413.11,136.3 659.66,178.56 650.01,170.41 634.11,158.5 618,153 582.83,141 481.44,137.46 421.31,136.43"];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 4 339.94 178.58 346.17 171 355.48 159.71 362.93 150.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 364.67 152.39 367.23 145.43 360.89 149.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 384.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="384.5,157.5",
		pos="e,368.19,144.26 339.94,178.58 346.17,171 355.48,159.71 362.93,150.65"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 426.13 178.57 422.36 171.1 416.02 160.27 408 153 406.25 151.42 404.33 149.94 402.32 148.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 403.83 146.62 396.57 145.11 401.31 150.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 454.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="454.5,157.5",
		pos="e,395.27,144.33 426.13,178.57 422.36,171.1 416.02,160.27 408,153 406.25,151.42 404.33,149.94 402.32,148.57"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 7 144.52 80.61 127.07 76.03 105.69 69.89 87 63 82.88 61.48 78.58 59.7 74.42 57.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 75.48 55.65 68.09 54.98 73.44 60.11 ",
		pos="e,66.714,54.348 144.52,80.614 127.07,76.03 105.69,69.887 87,63 82.877,61.481 78.575,59.697 74.424,57.867"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 4 375 125.56 375 111.14 375 81.48 375 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 377.45 62.8 375 55.8 372.55 62.8 ",
		pos="e,375,54.284 375,125.56 375,111.14 375,81.476 375,62.727"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 4 388.81 125.56 414.25 110.02 468.63 76.78 498.43 58.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 499.46 60.81 504.15 55.07 496.9 56.63 ",
		pos="e,505.44,54.284 388.81,125.56 414.25,110.02 468.63,76.78 498.43,58.57"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 7 401.69 125.54 442.99 112.41 524.85 86.2 594 63 599.45 61.17 605.23 59.2 610.83 57.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 611.62 59.59 617.43 54.98 610.01 54.96 ",
		pos="e,618.86,54.486 401.69,125.54 442.99,112.41 524.85,86.203 594,63 599.45,61.172 605.23,59.198 610.83,57.266"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 7 413.25 125.64 472.44 112.65 589.77 86.62 689 63 697.61 60.95 706.82 58.69 715.59 56.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 716.17 58.89 722.37 54.82 714.98 54.14 ",
		pos="e,723.83,54.451 413.25,125.64 472.44,112.65 589.77,86.619 689,63 697.61,60.95 706.82,58.692 715.59,56.51"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 10 370.57 125.85 363.51 113.71 348.48 91.09 329 80 290.2 57.91 273.76 71.84 230 63 220.13 61.01 209.57 58.67 199.62 \
56.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 200.29 54.01 192.92 54.8 199.18 58.78 ",
		pos="e,191.44,54.46 370.57,125.85 363.51,113.71 348.48,91.091 329,80 290.2,57.909 273.76,71.844 230,63 220.13,61.006 209.57,58.665 199.62,\
56.369"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 10 373.57 125.52 370.8 110.07 364.22 78.26 356 71 340.12 56.98 329.36 68.87 309 63 303.85 61.51 298.47 59.58 293.37 \
57.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 294.45 55.35 287.05 54.92 292.57 59.87 ",
		pos="e,285.65,54.338 373.57,125.52 370.8,110.07 364.22,78.258 356,71 340.12,56.977 329.36,68.873 309,63 303.85,61.514 298.47,59.581 293.37,\
57.553"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 336.73 129.81 318.38 127.18 296.26 123.11 277 117 268.09 114.18 266.85 111 258 108 250.53 105.46 242.52 103.22 \
234.58 101.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 235.54 98.97 228.16 99.75 234.41 103.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 292.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="292.5,112.5",
		pos="e,226.69,99.407 336.73,129.81 318.38,127.18 296.26,123.11 277,117 268.09,114.18 266.85,111 258,108 250.53,105.46 242.52,103.22 234.58,\
101.27"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 340.28 125.55 332.76 123.2 324.98 120.35 318 117 311.67 113.96 311.55 110.54 305 108 298.49 105.48 291.67 103.32 \
284.71 101.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 285.33 99.1 277.95 99.81 284.16 103.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 333 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="333,112.5",
		pos="e,276.48,99.444 340.28,125.55 332.76,123.2 324.98,120.35 318,117 311.67,113.96 311.55,110.54 305,108 298.49,105.48 291.67,103.32 \
284.71,101.47"];
}