{"@id":"https://w3id.org/cwl/view/git/8390ae07f727491c10916024d31429a4b25c143b/vcf-to-aliquot-maf/subworkflows/extract_file_with_index.cwl","retrievedFrom":{"repoUrl":"https://github.com/NCI-GDC/aliquot-maf-cwl.git","branch":"8390ae07f727491c10916024d31429a4b25c143b","path":"vcf-to-aliquot-maf/subworkflows/extract_file_with_index.cwl","packedId":null,"type":"GITHUB","rawUrl":"https://raw.githubusercontent.com/NCI-GDC/aliquot-maf-cwl/8390ae07f727491c10916024d31429a4b25c143b/vcf-to-aliquot-maf/subworkflows/extract_file_with_index.cwl","url":"https://github.com/NCI-GDC/aliquot-maf-cwl/blob/8390ae07f727491c10916024d31429a4b25c143b/vcf-to-aliquot-maf/subworkflows/extract_file_with_index.cwl"},"retrievedOn":"2026-08-31T12:05:52.237+00:00","lastCommit":"8390ae07f727491c10916024d31429a4b25c143b","label":"extract_file_with_index.cwl","inputs":{"file_uuid":{"type":"String"},"index_uuid":{"type":"String"},"bioclient_config":{"type":"File"}},"outputs":{"output_indexed_file":{"type":"File"}},"steps":{},"cwltoolVersion":"3.1.20230201224320","visualisationDot":"digraph workflow {\n  graph [\n    bgcolor = \"#eeeeee\"\n    color = \"black\"\n    fontsize = \"10\"\n    labeljust = \"left\"\n    clusterrank = \"local\"\n    ranksep = \"0.22\"\n    nodesep = \"0.05\"\n  ]\n  node [\n    fontname = \"Helvetica\"\n    fontsize = \"10\"\n    fontcolor = \"black\"\n    shape = \"record\"\n    height = \"0\"\n    width = \"0\"\n    color = \"black\"\n    fillcolor = \"lightgoldenrodyellow\"\n    style = \"filled\"\n  ];\n  edge [\n    fontname=\"Helvetica\"\n    fontsize=\"8\"\n    fontcolor=\"black\"\n    color=\"black\"\n    arrowsize=\"0.7\"\n  ];\n  subgraph cluster_inputs {\n    rank = \"same\";\n    style = \"dashed\";\n    label = \"Workflow Inputs\";\n    \"bioclient_config\" [fillcolor=\"#94DDF4\",label=\"bioclient_config\"];\n    \"file_uuid\" [fillcolor=\"#94DDF4\",label=\"file_uuid\"];\n    \"index_uuid\" [fillcolor=\"#94DDF4\",label=\"index_uuid\"];\n  }\n  subgraph cluster_outputs {\n    rank = \"same\";\n    style = \"dashed\";\n    labelloc = \"b\";\n    label = \"Workflow Outputs\";\n    \"output_indexed_file\" [fillcolor=\"#94DDF4\",label=\"output_indexed_file\"];\n  }\n  \"index_uuid\" -> \"extract_index\" [label=\"download_handle\"];\n  \"bioclient_config\" -> \"extract_index\" [label=\"config_file\"];\n  \"bioclient_config\" -> \"extract_file\" [label=\"config_file\"];\n  \"file_uuid\" -> \"extract_file\" [label=\"download_handle\"];\n  \"extract_file\" -> \"make_secondary\" [label=\"parent_file\"];\n  \"extract_index\" -> \"make_secondary\" [label=\"children\"];\n  \"make_secondary\" -> \"output_indexed_file\";\n}\n","licenseLink":"https://spdx.org/licenses/Apache-2.0","permalink":"https://w3id.org/cwl/view/git/8390ae07f727491c10916024d31429a4b25c143b/vcf-to-aliquot-maf/subworkflows/extract_file_with_index.cwl","packed":false,"visualisationXdot":"/graph/xdot/github.com/NCI-GDC/aliquot-maf-cwl/blob/8390ae07f727491c10916024d31429a4b25c143b/vcf-to-aliquot-maf/subworkflows/extract_file_with_index.cwl","visualisationPng":"/graph/png/github.com/NCI-GDC/aliquot-maf-cwl/blob/8390ae07f727491c10916024d31429a4b25c143b/vcf-to-aliquot-maf/subworkflows/extract_file_with_index.cwl","visualisationSvg":"/graph/svg/github.com/NCI-GDC/aliquot-maf-cwl/blob/8390ae07f727491c10916024d31429a4b25c143b/vcf-to-aliquot-maf/subworkflows/extract_file_with_index.cwl","roBundle":"/robundle/github.com/NCI-GDC/aliquot-maf-cwl/blob/8390ae07f727491c10916024d31429a4b25c143b/vcf-to-aliquot-maf/subworkflows/extract_file_with_index.cwl","licenseName":"Apache License 2.0"}