digraph workflow {
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	subgraph cluster_outputs {
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		original_fastq_read_count	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 383.5 35.5 383.5 54.5 526.5 54.5 526.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 455 42.5 0 127 25 -original_fastq_read_count ",
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			pos="112,45",
			rects="16,35.5,208,54.5",
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		output_pbc_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 531 35.5 531 54.5 627 54.5 627 35.5 ",
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			rects="531,35.5,627,54.5",
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		output_percentage_uniq_reads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 631.5 35.5 631.5 54.5 798.5 54.5 798.5 35.5 ",
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			fillcolor="#94DDF4",
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			rects="631.5,35.5,798.5,54.5",
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		output_read_count_mapped	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 962 35.5 962 54.5 1114 54.5 1114 35.5 ",
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			label=output_read_count_mapped,
			pos="1038,45",
			rects="962,35.5,1114,54.5",
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		output_preseq_c_curve_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 802.5 35.5 802.5 54.5 957.5 54.5 957.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 880 42.5 0 139 27 -output_preseq_c_curve_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_preseq_c_curve_files,
			pos="880,45",
			rects="802.5,35.5,957.5,54.5",
			width=2.1528];
	}
	remove_encode_blacklist	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 332.5 260.5 332.5 279.5 473.5 279.5 473.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 403 267.5 0 125 23 -remove_encode_blacklist ",
		height=0.27778,
		label=remove_encode_blacklist,
		pos="403,270",
		rects="332.5,260.5,473.5,279.5",
		width=1.9583];
	ENCODE_blacklist_bedfile -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 13 228.67 583.57 258.53 573.91 301 557.3 301 541 301 541 301 541 301 449 301 427.34 353.99 389.28 366 370 382.64 \
343.27 393.6 307.89 399.01 287.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 401.33 288.32 400.68 280.93 396.58 287.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 318 425.6 0 6 1 -b ",
		label=b,
		lp="318,427.5",
		pos="e,401.05,279.46 228.67,583.57 258.53,573.91 301,557.3 301,541 301,541 301,541 301,449 301,427.34 353.99,389.28 366,370 382.64,343.27 \
393.6,307.89 399.01,287.47"];
	sort_filtered_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 248 125.5 248 144.5 350 144.5 350 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 299 132.5 0 86 17 -sort_filtered_bam ",
		height=0.27778,
		label=sort_filtered_bam,
		pos="299,135",
		rects="248,125.5,350,144.5",
		width=1.4167];
	nthreads -> sort_filtered_bam	[_draw_="c 7 -#000000 B 13 409.99 583.81 403.47 574.1 394 557.2 394 541 394 541 394 541 394 449 394 410.28 347.74 366.55 333 325 311.2 263.54 \
302.86 185.65 300.14 152.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 302.61 152.46 299.64 145.67 297.73 152.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 375.5 358.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="375.5,360",
		pos="e,299.52,144.16 409.99,583.81 403.47,574.1 394,557.2 394,541 394,541 394,541 394,449 394,410.28 347.74,366.55 333,325 311.2,263.54 \
302.86,185.65 300.14,152.33"];
	"bowtie-se"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 784.5 485.5 784.5 504.5 849.5 504.5 849.5 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 817 492.5 0 49 9 -bowtie-se ",
		height=0.27778,
		label="bowtie-se",
		pos="817,495",
		rects="784.5,485.5,849.5,504.5",
		width=0.90278];
	nthreads -> "bowtie-se"	[_draw_="c 7 -#000000 B 13 429.72 583.54 435.72 580.27 442.99 576.87 450 575 510.22 558.96 528.32 575.92 590 567 676.74 554.45 702.5 558.9 \
782 522 788.91 518.79 795.79 514.09 801.61 509.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 802.84 511.72 806.7 505.39 799.74 507.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 779.5 538.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="779.5,540",
		pos="e,807.87,504.43 429.72,583.54 435.72,580.27 442.99,576.87 450,575 510.22,558.96 528.32,575.92 590,567 676.74,554.45 702.5,558.9 \
782,522 788.91,518.79 795.79,514.09 801.61,509.56"];
	filtered2sorted	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 408 305.5 408 324.5 496 324.5 496 305.5 ",
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		height=0.27778,
		label=filtered2sorted,
		pos="452,315",
		rects="408,305.5,496,324.5",
		width=1.2222];
	nthreads -> filtered2sorted	[_draw_="c 7 -#000000 B 10 413.11 583.81 409.85 573.84 405 556.4 405 541 405 541 405 541 405 404 405 375.51 424.41 347.3 438.28 330.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 440.06 332.46 442.82 325.58 436.37 329.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 423.5 448.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="423.5,450",
		pos="e,443.81,324.44 413.11,583.81 409.85,573.84 405,556.4 405,541 405,541 405,541 405,404 405,375.51 424.41,347.3 438.28,330.77"];
	sort_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 564 395.5 564 414.5 632 414.5 632 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 598 402.5 0 52 9 -sort_bams ",
		height=0.27778,
		label=sort_bams,
		pos="598,405",
		rects="564,395.5,632,414.5",
		width=0.94444];
	nthreads -> sort_bams	[_draw_="c 7 -#000000 B 10 413.95 583.66 409.57 563.61 401.7 512.36 428 485 479.09 431.84 540.93 513.18 592 460 601.37 450.24 602.12 434.46 \
600.98 422.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 603.43 422.31 600.04 415.71 598.57 422.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 446.5 493.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="446.5,495",
		pos="e,599.84,414.21 413.95,583.66 409.57,563.61 401.7,512.36 428,485 479.09,431.84 540.93,513.18 592,460 601.37,450.24 602.12,434.46 \
600.98,422.48"];
	extract_basename	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 526.5 530.5 526.5 549.5 633.5 549.5 633.5 530.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 580 537.5 0 91 16 -extract_basename ",
		height=0.27778,
		label=extract_basename,
		pos="580,540",
		rects="526.5,530.5,633.5,549.5",
		width=1.4861];
	input_fastq_files -> extract_basename	[_draw_="c 7 -#000000 B 4 511.54 583.58 524.6 575.46 544.53 563.06 559.53 553.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 560.5 556.01 565.15 550.23 557.92 551.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 570 560.6 0 38 10 -input_file ",
		label=input_file,
		lp="570,562.5",
		pos="e,566.44,549.43 511.54,583.58 524.6,575.46 544.53,563.06 559.53,553.73"];
	input_fastq_files -> "bowtie-se"	[_draw_="c 7 -#000000 B 13 519.84 583.5 529.27 580.23 540.53 576.83 551 575 600.29 566.39 727.59 579.65 776 567 791.96 562.83 799.4 563.42 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 818.62 512.94 816.59 505.81 813.73 512.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 845.5 538.1 0 63 16 -input_fastq_file ",
		label=input_fastq_file,
		lp="845.5,540",
		pos="e,816.68,504.3 519.84,583.5 529.27,580.23 540.53,576.83 551,575 600.29,566.39 727.59,579.65 776,567 791.96,562.83 799.4,563.42 809,\
550 813.21,544.12 815.24,526.07 816.2,512.44"];
	count_fastq_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 467 485.5 467 504.5 573 504.5 573 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 520 492.5 0 90 17 -count_fastq_reads ",
		height=0.27778,
		label=count_fastq_reads,
		pos="520,495",
		rects="467,485.5,573,504.5",
		width=1.4722];
	input_fastq_files -> count_fastq_reads	[_draw_="c 7 -#000000 B 7 486.94 583.59 472.69 571.69 450.99 549.22 462 530 467.5 520.4 476.89 513.24 486.52 508.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 487.31 510.38 492.52 505.1 485.16 505.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 493.5 538.1 0 63 16 -input_fastq_file ",
		label=input_fastq_file,
		lp="493.5,540",
		pos="e,493.88,504.44 486.94,583.59 472.69,571.69 450.99,549.22 462,530 467.5,520.4 476.89,513.24 486.52,508.04"];
	genome_ref_first_index_file -> "bowtie-se"	[_draw_="c 7 -#000000 B 7 702.77 590.5 769.45 587.31 859.08 577.79 880 550 892.79 533.01 869.89 517.66 848.2 507.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 849.42 505.57 842.03 505.02 847.47 510.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 938.5 538.1 0 111 27 -genome_ref_first_index_file ",
		label=genome_ref_first_index_file,
		lp="938.5,540",
		pos="e,840.64,504.42 702.77,590.5 769.45,587.31 859.08,577.79 880,550 892.79,533.01 869.89,517.66 848.2,507.71"];
	execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 499 260.5 499 279.5 657 279.5 657 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 578 267.5 0 142 27 -execute_pcr_bottleneck_coef ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label=execute_pcr_bottleneck_coef,
		pos="578,270",
		rects="499,260.5,657,279.5",
		width=2.1944];
	genome_sizes_file -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 16 328.47 583.7 327.88 573.61 327 556.06 327 541 327 541 327 541 327 449 327 433.3 505.45 342.99 507 342 535.4 323.88 \
547.58 323.8 568 297 570.18 294.14 571.94 290.75 573.33 287.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 575.65 288.18 575.6 280.77 571.01 286.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 388.5 425.6 0 59 12 -genome_sizes ",
		label=genome_sizes,
		lp="388.5,427.5",
		pos="e,576.1,279.33 328.47,583.7 327.88,573.61 327,556.06 327,541 327,541 327,541 327,449 327,433.3 505.45,342.99 507,342 535.4,323.88 \
547.58,323.8 568,297 570.18,294.14 571.94,290.75 573.33,287.37"];
	filtered_bed_to_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 311 170.5 311 189.5 427 189.5 427 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 369 177.5 0 100 19 -filtered_bed_to_bam ",
		height=0.27778,
		label=filtered_bed_to_bam,
		pos="369,180",
		rects="311,170.5,427,189.5",
		width=1.6111];
	genome_sizes_file -> filtered_bed_to_bam	[_draw_="c 7 -#000000 B 10 325.17 583.53 321.03 573.57 315 556.43 315 541 315 541 315 541 315 224 315 210.3 325.76 200.27 337.68 193.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 338.75 195.56 343.82 190.14 336.48 191.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 318 380.6 0 6 1 -g ",
		label=g,
		lp="318,382.5",
		pos="e,345.16,189.44 325.17,583.53 321.03,573.57 315,556.43 315,541 315,541 315,541 315,224 315,210.3 325.76,200.27 337.68,193.35"];
	sam2bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 606.5 440.5 606.5 459.5 671.5 459.5 671.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 639 447.5 0 49 7 -sam2bam ",
		height=0.27778,
		label=sam2bam,
		pos="639,450",
		rects="606.5,440.5,671.5,459.5",
		width=0.90278];
	sam2bam -> sort_bams	[_draw_="c 7 -#000000 B 4 631.09 440.71 625.54 434.88 617.96 426.93 611.46 420.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 613.53 418.74 606.93 415.36 609.98 422.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 641 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="641,427.5",
		pos="e,605.88,414.27 631.09,440.71 625.54,434.88 617.96,426.93 611.46,420.12"];
	"filter-unmapped"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 521.5 350.5 521.5 369.5 616.5 369.5 616.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 569 357.5 0 79 15 -filter-unmapped ",
		height=0.27778,
		label="filter-unmapped",
		pos="569,360",
		rects="521.5,350.5,616.5,369.5",
		width=1.3194];
	"filter-unmapped" -> filtered2sorted	[_draw_="c 7 -#000000 B 4 545.88 350.5 527.86 343.88 502.65 334.61 482.89 327.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 483.9 325.12 476.49 325 482.21 329.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 539 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="539,337.5",
		pos="e,475.07,324.48 545.88,350.5 527.86,343.88 502.65,334.61 482.89,327.35"];
	extract_basename -> "filter-unmapped"	[_draw_="c 7 -#000000 B 10 580.88 530.66 581.65 519.44 581.55 499.27 573 485 563.18 468.6 546.75 477 538 460 523.6 432.03 543.29 396.13 557.25 \
376.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 559.19 377.64 561.34 370.55 555.23 374.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 571.5 448.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="571.5,450",
		pos="e,562.23,369.32 580.88,530.66 581.65,519.44 581.55,499.27 573,485 563.18,468.6 546.75,477 538,460 523.6,432.03 543.29,396.13 557.25,\
376.15"];
	extract_basename -> "bowtie-se"	[_draw_="c 7 -#000000 B 10 633.35 537.78 656.39 535.76 683.23 531.33 706 522 712.17 519.47 711.88 515.64 718 513 736.33 505.1 758.07 500.87 \
776.49 498.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 776.51 501.06 783.2 497.86 775.97 496.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 751.5 515.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="751.5,517.5",
		pos="e,784.7,497.69 633.35,537.78 656.39,535.76 683.23,531.33 706,522 712.17,519.47 711.88,515.64 718,513 736.33,505.1 758.07,500.87 \
776.49,498.6"];
	extract_basename -> count_fastq_reads	[_draw_="c 7 -#000000 B 7 526.68 531.25 517.56 528.86 510.03 525.82 507 522 504.4 518.72 504.85 514.84 506.64 511.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 508.54 512.66 510.44 505.49 504.48 509.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 541.5 515.6 0 69 14 -input_basename ",
		label=input_basename,
		lp="541.5,517.5",
		pos="e,511.3,504.24 526.68,531.25 517.56,528.86 510.03,525.82 507,522 504.4,518.72 504.85,514.84 506.64,511.1"];
	extract_basename -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 19 596.81 530.54 618.85 518.38 656.53 493.67 672 460 679.16 444.41 674.04 434.15 661 423 654.35 417.31 648.11 422.11 \
643 415 634.79 403.58 640 397.56 640 383.5 640 383.5 640 383.5 640 314 640 299.52 628.44 289.53 615.31 282.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 616.67 280.78 609.29 280.1 614.64 285.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 691.5 403.1 0 97 22 -input_output_filenames ",
		label=input_output_filenames,
		lp="691.5,405",
		pos="e,607.91,279.47 596.81,530.54 618.85,518.38 656.53,493.67 672,460 679.16,444.41 674.04,434.15 661,423 654.35,417.31 648.11,422.11 \
643,415 634.79,403.58 640,397.56 640,383.5 640,383.5 640,383.5 640,314 640,299.52 628.44,289.53 615.31,282.85"];
	extract_basename -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 16 535.93 530.53 508.46 524.38 476.57 515.34 467 505 446.08 482.4 459.34 466.1 443 440 434.83 426.94 425.61 428.91 \
419 415 401.72 378.6 412.3 365.07 408 325 406.66 312.55 405.37 298.45 404.43 287.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 406.88 287.7 403.83 280.93 402 288.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 464.5 403.1 0 91 20 -output_basename_file ",
		label=output_basename_file,
		lp="464.5,405",
		pos="e,403.7,279.43 535.93,530.53 508.46,524.38 476.57,515.34 467,505 446.08,482.4 459.34,466.1 443,440 434.83,426.94 425.61,428.91 419,\
415 401.72,378.6 412.3,365.07 408,325 406.66,312.55 405.37,298.45 404.43,287.79"];
	"preseq-c-curve"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 758.5 125.5 758.5 144.5 847.5 144.5 847.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 803 132.5 0 73 14 -preseq-c-curve ",
		height=0.27778,
		label="preseq-c-curve",
		pos="803,135",
		rects="758.5,125.5,847.5,144.5",
		width=1.2361];
	extract_basename -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 13 633.39 531.05 667.14 523.15 708.8 507.56 733 477 752.82 451.96 744 437.93 744 406 744 406 744 406 744 179 744 \
164.8 755.3 154.8 768 148.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 768.95 150.3 774.21 145.07 766.83 145.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 789.5 335.6 0 91 20 -output_file_basename ",
		label=output_file_basename,
		lp="789.5,337.5",
		pos="e,775.57,144.42 633.39,531.05 667.14,523.15 708.8,507.56 733,477 752.82,451.96 744,437.93 744,406 744,406 744,406 744,179 744,164.8 \
755.3,154.8 768,148.03"];
	index_filtered_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 242 80.5 242 99.5 352 99.5 352 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 297 87.5 0 94 18 -index_filtered_bam ",
		height=0.27778,
		label=index_filtered_bam,
		pos="297,90",
		rects="242,80.5,352,99.5",
		width=1.5278];
	sort_filtered_bam -> index_filtered_bam	[_draw_="c 7 -#000000 B 4 298.61 125.71 298.38 120.59 298.06 113.85 297.78 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 300.23 107.66 297.45 100.78 295.33 107.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 317 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="317,112.5",
		pos="e,297.38,99.265 298.61,125.71 298.38,120.59 298.06,113.85 297.78,107.67"];
	mapped_filtered_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 65.5 80.5 65.5 99.5 226.5 99.5 226.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 146 87.5 0 145 27 -mapped_filtered_reads_count ",
		height=0.27778,
		label=mapped_filtered_reads_count,
		pos="146,90",
		rects="65.5,80.5,226.5,99.5",
		width=2.2361];
	sort_filtered_bam -> mapped_filtered_reads_count	[_draw_="c 7 -#000000 B 7 267.24 125.55 257.24 122.85 246.15 119.83 236 117 218.37 112.07 198.84 106.45 182.49 101.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 183.6 99.47 176.19 99.87 182.23 104.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 266 110.6 0 60 14 -input_bam_file ",
		label=input_bam_file,
		lp="266,112.5",
		pos="e,174.74,99.443 267.24,125.55 257.24,122.85 246.15,119.83 236,117 218.37,112.07 198.84,106.45 182.49,101.7"];
	index_filtered_bam -> output_data_filtered_bam_files	[_draw_="c 7 -#000000 B 4 296.81 80.71 296.69 75.59 296.53 68.85 296.39 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 298.84 62.72 296.23 55.78 293.94 62.83 ",
		pos="e,296.19,54.265 296.81,80.709 296.69,75.593 296.53,68.848 296.39,62.666"];
	"bowtie-se" -> output_bowtie_log	[_draw_="c 7 -#000000 B 10 849.23 494.82 914.47 495.6 1056 492.53 1056 451 1056 451 1056 451 1056 89 1056 84.61 1103.26 68.31 1137.45 57.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1138.05 59.47 1143.95 54.96 1136.53 54.81 ",
		pos="e,1145.4,54.494 849.23,494.82 914.47,495.6 1056,492.53 1056,451 1056,451 1056,451 1056,89 1056,84.613 1103.3,68.308 1137.4,57.086"];
	"bowtie-se" -> sam2bam	[_draw_="c 7 -#000000 B 4 784.77 486.21 755.24 479.08 711.42 468.5 679.54 460.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 680.15 458.42 672.77 459.16 679 463.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 762 470.6 0 38 10 -input_file ",
		label=input_file,
		lp="762,472.5",
		pos="e,671.29,458.8 784.77,486.21 755.24,479.08 711.42,468.5 679.54,460.79"];
	mapped_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 891.5 80.5 891.5 99.5 1012.5 99.5 1012.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 952 87.5 0 105 18 -mapped_reads_count ",
		height=0.27778,
		label=mapped_reads_count,
		pos="952,90",
		rects="891.5,80.5,1012.5,99.5",
		width=1.6806];
	"bowtie-se" -> mapped_reads_count	[_draw_="c 7 -#000000 B 10 849.32 489.21 885.76 482.88 940 470.23 940 451 940 451 940 451 940 134 940 124.89 942.53 115.09 945.26 107.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 947.48 108.2 947.67 100.79 942.9 106.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 962.5 290.6 0 45 10 -bowtie_log ",
		label=bowtie_log,
		lp="962.5,292.5",
		pos="e,948.2,99.374 849.32,489.21 885.76,482.88 940,470.23 940,451 940,451 940,451 940,134 940,124.89 942.53,115.09 945.26,107.14"];
	mapped_reads_count -> output_read_count_mapped	[_draw_="c 7 -#000000 B 4 968.99 80.5 981.71 74.14 999.3 65.35 1013.53 58.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1014.53 60.48 1019.69 55.15 1012.33 56.09 ",
		pos="e,1021,54.478 968.99,80.505 981.71,74.144 999.3,65.351 1013.5,58.233"];
	count_fastq_reads -> original_fastq_read_count	[_draw_="c 7 -#000000 B 13 519.01 485.7 515.83 459.29 505.56 374.8 496 305 493.93 289.87 491 286.27 491 271 491 271 491 271 491 89 491 77.21 \
482.94 66.95 474.45 59.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 476.16 57.64 469.17 55.15 473.08 61.45 ",
		pos="e,468,54.197 519.01,485.7 515.83,459.29 505.56,374.8 496,305 493.93,289.87 491,286.27 491,271 491,271 491,271 491,89 491,77.207 \
482.94,66.947 474.45,59.41"];
	execute_pcr_bottleneck_coef -> output_pbc_files	[_draw_="c 7 -#000000 B 10 578.31 260.76 578.6 252.1 579 238.1 579 226 579 226 579 226 579 89 579 80.31 579 70.63 579 62.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 581.45 62.76 579 55.76 576.55 62.76 ",
		pos="e,579,54.243 578.31,260.76 578.6,252.1 579,238.1 579,226 579,226 579,226 579,89 579,80.308 579,70.627 579,62.655"];
	filter_pcr_artifacts	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 329.5 215.5 329.5 234.5 434.5 234.5 434.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 382 222.5 0 89 20 -filter_pcr_artifacts ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label=filter_pcr_artifacts,
		pos="382,225",
		rects="329.5,215.5,434.5,234.5",
		width=1.4583];
	remove_encode_blacklist -> filter_pcr_artifacts	[_draw_="c 7 -#000000 B 4 398.95 260.71 396.34 255.36 392.85 248.22 389.72 241.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 391.97 240.84 386.7 235.63 387.57 242.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426 245.6 0 64 15 -input_bam_files ",
		label=input_bam_files,
		lp="426,247.5",
		pos="e,386.04,234.27 398.95,260.71 396.34,255.36 392.85,248.22 389.72,241.81"];
	filtered2sorted -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 7 467.52 305.6 478.34 300.01 493.25 292.84 507 288 513.85 285.59 521.19 283.41 528.45 281.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 528.64 283.95 534.82 279.84 527.43 279.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 539 290.6 0 64 15 -input_bam_files ",
		label=input_bam_files,
		lp="539,292.5",
		pos="e,536.28,279.47 467.52,305.6 478.34,300.01 493.25,292.84 507,288 513.85,285.59 521.19,283.41 528.45,281.47"];
	filtered2sorted -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 4 442.55 305.71 435.77 299.76 426.48 291.61 418.61 284.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 420.43 283.04 413.56 280.26 417.2 286.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 434 290.6 0 6 1 -a ",
		label=a,
		lp="434,292.5",
		pos="e,412.42,279.27 442.55,305.71 435.77,299.76 426.48,291.61 418.61,284.7"];
	sort_bams -> "filter-unmapped"	[_draw_="c 7 -#000000 B 4 592.41 395.71 588.64 390.12 583.55 382.58 579.09 375.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 581.37 374.95 575.42 370.52 577.3 377.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 605 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="605,382.5",
		pos="e,574.57,369.27 592.41,395.71 588.64,390.12 583.55,382.58 579.09,375.96"];
	sort_bams -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 13 631.58 396.11 633.41 395.72 635.23 395.35 637 395 682.52 386 843 407.4 843 361 843 361 843 361 843 179 843 166.86 \
834.34 156.71 825.08 149.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 826.68 147.45 819.58 145.33 823.81 151.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 877 268.1 0 68 17 -input_sorted_file ",
		label=input_sorted_file,
		lp="877,270",
		pos="e,818.35,144.44 631.58,396.11 633.41,395.72 635.23,395.35 637,395 682.52,386 843,407.4 843,361 843,361 843,361 843,179 843,166.86 \
834.34,156.71 825.08,149.32"];
	filter_pcr_artifacts -> filtered_bed_to_bam	[_draw_="c 7 -#000000 B 4 379.49 215.71 377.91 210.47 375.81 203.53 373.91 197.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 376.31 196.71 371.94 190.71 371.62 198.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377.5 200.6 0 3 1 -i ",
		label=i,
		lp="377.5,202.5",
		pos="e,371.5,189.27 379.49,215.71 377.91,210.47 375.81,203.53 373.91,197.24"];
	percent_uniq_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 696 80.5 696 99.5 808 99.5 808 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 752 87.5 0 96 18 -percent_uniq_reads ",
		height=0.27778,
		label=percent_uniq_reads,
		pos="752,90",
		rects="696,80.5,808,99.5",
		width=1.5556];
	percent_uniq_reads -> output_percentage_uniq_reads	[_draw_="c 7 -#000000 B 4 744.87 80.71 739.95 75 733.29 67.26 727.51 60.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 729.52 59.12 723.1 55.41 725.81 62.32 ",
		pos="e,722.11,54.265 744.87,80.709 739.95,74.998 733.29,67.258 727.51,60.535"];
	mapped_filtered_reads_count -> output_read_count_mapped_filtered	[_draw_="c 7 -#000000 B 4 139.44 80.71 134.93 75 128.81 67.26 123.49 60.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 125.74 59.42 119.47 55.45 121.89 62.46 ",
		pos="e,118.54,54.265 139.44,80.709 134.93,74.998 128.81,67.258 123.49,60.535"];
	filtered_bed_to_bam -> sort_filtered_bam	[_draw_="c 7 -#000000 B 4 355.17 170.5 345.1 164.32 331.29 155.84 319.89 148.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 321.34 146.85 314.09 145.27 318.77 151.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 359 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="359,157.5",
		pos="e,312.8,144.48 355.17,170.5 345.1,164.32 331.29,155.84 319.89,148.83"];
	"preseq-c-curve" -> output_preseq_c_curve_files	[_draw_="c 7 -#000000 B 7 847.22 127.89 853.5 125.37 859.38 121.86 864 117 877.83 102.46 880.66 78.63 880.81 62.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 883.26 62.72 880.69 55.77 878.37 62.81 ",
		pos="e,880.66,54.255 847.22,127.89 853.5,125.37 859.38,121.86 864,117 877.83,102.46 880.66,78.631 880.81,62.637"];
	"preseq-c-curve" -> percent_uniq_reads	[_draw_="c 7 -#000000 B 7 785.45 125.52 781.17 123.06 776.74 120.18 773 117 769.24 113.81 765.66 109.87 762.56 106.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 764.64 104.73 758.46 100.62 760.73 107.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 820 110.6 0 94 22 -preseq_c_curve_outfile ",
		label=preseq_c_curve_outfile,
		lp="820,112.5",
		pos="e,757.55,99.418 785.45,125.52 781.17,123.06 776.74,120.18 773,117 769.24,113.81 765.66,109.87 762.56,106.03"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 333 305.5 333 324.5 369 324.5 369 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 351 312.5 0 20 4 -true ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=true,
		pos="351,315",
		rects="333,305.5,369,324.5",
		width=0.5];
	default1 -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 7 354.47 305.87 357.2 300.26 361.47 292.95 367 288 368.79 286.4 370.75 284.92 372.81 283.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 373.91 285.76 378.75 280.14 371.46 281.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 369.5 290.6 0 5 1 -v ",
		label=v,
		lp="369.5,292.5",
		pos="e,380.06,279.39 354.47,305.87 357.2,300.26 361.47,292.95 367,288 368.79,286.4 370.75,284.92 372.81,283.56"];
}