{"@id":"https://w3id.org/cwl/view/git/7b4b489474473c3d2d992a838b89632c2b97dc2c/definitions/subworkflows/docm_germline.cwl","retrievedFrom":{"repoUrl":"https://github.com/genome/analysis-workflows.git","branch":"7b4b489474473c3d2d992a838b89632c2b97dc2c","path":"definitions/subworkflows/docm_germline.cwl","packedId":null,"type":"GITHUB","rawUrl":"https://raw.githubusercontent.com/genome/analysis-workflows/7b4b489474473c3d2d992a838b89632c2b97dc2c/definitions/subworkflows/docm_germline.cwl","url":"https://github.com/genome/analysis-workflows/blob/7b4b489474473c3d2d992a838b89632c2b97dc2c/definitions/subworkflows/docm_germline.cwl"},"retrievedOn":"2026-09-05T10:58:45.345+00:00","lastCommit":"7b4b489474473c3d2d992a838b89632c2b97dc2c","label":"Detect DoCM variants","inputs":{"bam":{"type":"File"},"docm_vcf":{"type":"File"},"reference":{"type":"File"},"interval_list":{"type":"File"}},"outputs":{"filtered_vcf":{"type":"File"},"unfiltered_vcf":{"type":"File"}},"steps":{"bgzip":{"label":"bgzip 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