@prefix rdf:   <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix CommandLineBinding: <https://w3id.org/cwl/cwl#CommandLineBinding/> .
@prefix DockerRequirement: <https://w3id.org/cwl/cwl#DockerRequirement/> .
@prefix cwl:   <https://w3id.org/cwl/cwl#> .
@prefix Workflow: <https://w3id.org/cwl/cwl#Workflow/> .
@prefix sld:   <https://w3id.org/cwl/salad#> .
@prefix CommandOutputBinding: <https://w3id.org/cwl/cwl#CommandOutputBinding/> .
@prefix ns1:   <http://commonwl.org/cwltool#> .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-index.cwl#fasta-files>
        cwl:format        <http://edamontology.org/format_1929> ;
        cwl:inputBinding  []  ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-quant.cwl#quantification>
        cwl:outputBinding  [ CommandOutputBinding:glob
                          "out/abundances.h5" ] ;
        sld:type           cwl:File .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-index.cwl>
        a                        cwl:CommandLineTool ;
        ns1:original_cwlVersion  "v1.0" ;
        cwl:arguments            ( "--index" "index.idx" ) ;
        cwl:baseCommand          ( "kallisto" "index" ) ;
        cwl:cwlVersion           <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/v1.2> ;
        cwl:hints                [ a                             cwl:DockerRequirement ;
                                   DockerRequirement:dockerPull  "insilicodb/kallisto"
                                 ] ;
        cwl:hints                [ a  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/LoadListingRequirement> ] ;
        cwl:hints                [ a  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/NetworkAccess> ] ;
        cwl:inputs               <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-index.cwl#fasta-files> ;
        cwl:outputs              <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-index.cwl#index> .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-quant.cwl#fastqs>
        cwl:format        <http://edamontology.org/format_1930> ;
        cwl:inputBinding  []  ;
        sld:type          [ sld:items  cwl:File ;
                            sld:type   sld:array
                          ] .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#quants>
        cwl:outputSource  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#quantifying/quantification> ;
        sld:type          cwl:File .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#quantifying/fastqs>
        cwl:source  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#reads> .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-index.cwl#index>
        cwl:outputBinding  [ CommandOutputBinding:glob
                          "index.idx" ] ;
        sld:type           cwl:File .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#indexing/fasta-files>
        cwl:source  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#transcripts> .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#indexing>
        cwl:in   <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#indexing/fasta-files> ;
        cwl:out  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#indexing/index> ;
        cwl:run  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-index.cwl> .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-quant.cwl>
        a                        cwl:CommandLineTool ;
        ns1:original_cwlVersion  "v1.0" ;
        cwl:arguments            ( "--output-dir" "out" ) ;
        cwl:baseCommand          ( "kallisto" "quant" ) ;
        cwl:cwlVersion           <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/v1.2> ;
        cwl:hints                [ a  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/NetworkAccess> ] ;
        cwl:hints                [ a                             cwl:DockerRequirement ;
                                   DockerRequirement:dockerPull  "insilicodb/kallisto"
                                 ] ;
        cwl:hints                [ a  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/LoadListingRequirement> ] ;
        cwl:inputs               <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-quant.cwl#index> , <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-quant.cwl#fastqs> ;
        cwl:outputs              <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-quant.cwl#quantification> .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#quantifying/index>
        cwl:source  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#indexing/index> .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#transcripts>
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl>
        a                        cwl:Workflow ;
        ns1:original_cwlVersion  "v1.0" ;
        Workflow:steps           <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#quantifying> , <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#indexing> ;
        cwl:cwlVersion           <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/v1.2> ;
        cwl:hints                [ a  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/LoadListingRequirement> ] ;
        cwl:hints                [ a  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/NetworkAccess> ] ;
        cwl:hints                [ a                             cwl:DockerRequirement ;
                                   DockerRequirement:dockerPull  "insilicodb/kallisto"
                                 ] ;
        cwl:inputs               <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#reads> , <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#transcripts> ;
        cwl:outputs              <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#quants> .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#quantifying>
        cwl:in   <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#quantifying/index> , <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#quantifying/fastqs> ;
        cwl:out  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#quantifying/quantification> ;
        cwl:run  <https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-quant.cwl> .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/workflows/kallisto-demo.cwl#reads>
        sld:type  [ sld:items  cwl:File ;
                    sld:type   sld:array
                  ] .

<https://w3id.org/cwl/view/git/767d700e602805112a4c953d166e570cddfa2605/tools/kallisto-quant.cwl#index>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "--index" ] ;
        sld:type          cwl:File .