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	sam2bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 802.5 530.5 802.5 549.5 867.5 549.5 867.5 530.5 ",
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	nthreads -> sam2bam	[_draw_="c 7 -#000000 B 10 907.93 628.61 902.56 625.84 896.54 622.76 891 620 868.04 608.57 853.44 616.19 839 595 831.56 584.09 831.08 568.9 \
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	nthreads -> "bowtie-se"	[_draw_="c 7 -#000000 B 10 910.36 628.5 904.59 625.31 897.67 621.97 891 620 856.74 609.86 846.45 616.5 811 612 767.02 606.42 716.84 598.5 \
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	nthreads -> filtered2sorted	[_draw_="c 7 -#000000 B 10 929.32 628.84 932.34 624.04 936.09 617.79 939 612 957.58 575.06 984.07 472.21 1010 440 1016.8 431.56 1026.23 424.33 \
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	nthreads -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 13 923.65 628.65 922.96 614.18 921.11 583.56 917 558 907.68 500.04 891 487.2 891 428.5 891 428.5 891 428.5 891 314 \
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	sort_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 817 485.5 817 504.5 885 504.5 885 485.5 ",
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		label=sort_bams,
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	nthreads -> sort_bams	[_draw_="c 7 -#000000 B 10 918 628.84 909.02 616.22 892.16 590.94 883 567 874.25 544.12 884.71 533.94 872 513 871.36 511.95 870.63 510.93 \
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	nthreads -> sort_dedup_bams	[_draw_="c 7 -#000000 B 22 926.89 628.81 930.15 618.84 935 601.4 935 586 935 586 935 586 935 381.5 935 367.16 934.14 361.99 942 350 945.31 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 953.5 380.6 0 37 8 -nthreads ",
		label=nthreads,
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		label=genome_ref_first_index_file,
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		label=execute_pcr_bottleneck_coef,
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376.94 ",
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		label=genome_sizes,
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		label=input_fastq_file,
		lp="673.5,607.5",
		pos="e,642,594.26 642,628.58 642,621.52 642,611.24 642,602.55"];
	extract_basename_1	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 835.5 700.5 835.5 719.5 954.5 719.5 954.5 700.5 ",
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		label=extract_basename_1,
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	input_fastq_files -> extract_basename_1	[_draw_="c 7 -#000000 B 7 651.43 647.28 661.5 655.64 678.28 668.27 695 675 737.25 692 787.84 700.5 827.57 704.75 ",
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		height=0.27778,
		label=mark_duplicates,
		pos="820,315",
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	picard_java_opts -> mark_duplicates	[_draw_="c 7 -#000000 B 13 822.11 628.62 814.87 624.55 807.13 619.01 802 612 794.93 602.34 795 597.97 795 586 795 586 795 586 795 494 795 \
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		label=java_opts,
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809.07,363.89 816.1,332.56"];
	picard_jar_path -> mark_duplicates	[_draw_="c 7 -#000000 B 10 736.08 628.66 730.75 618.81 723 601.77 723 586 723 586 723 586 723 359 723 338.17 741.92 327.36 763.05 321.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 763.48 324.18 769.74 320.22 762.37 319.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 754.5 470.6 0 63 15 -picard_jar_path ",
		label=picard_jar_path,
		lp="754.5,472.5",
		pos="e,771.22,319.87 736.08,628.66 730.75,618.81 723,601.77 723,586 723,586 723,586 723,359 723,338.17 741.92,327.36 763.05,321.77"];
	extract_basename_2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1089.5 628.5 1089.5 647.5 1208.5 647.5 1208.5 628.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1149 635.5 0 103 18 -extract_basename_2 ",
		height=0.27778,
		label=extract_basename_2,
		pos="1149,638",
		rects="1089.5,628.5,1208.5,647.5",
		width=1.6528];
	extract_basename_2 -> mark_duplicates	[_draw_="c 7 -#000000 B 10 1140.57 628.65 1127.71 615.8 1102.63 590.21 1083 567 1047.35 524.86 1046.41 507.64 1008 468 952.1 410.31 874.71 \
353.92 839.2 329.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 840.67 327.18 833.53 325.2 837.88 331.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1049.5 470.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="1049.5,472.5",
		pos="e,832.28,324.34 1140.6,628.65 1127.7,615.8 1102.6,590.21 1083,567 1047.3,524.86 1046.4,507.64 1008,468 952.1,410.31 874.71,353.92 \
839.2,329.14"];
	"preseq-c-curve"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1127.5 125.5 1127.5 144.5 1216.5 144.5 1216.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1172 132.5 0 73 14 -preseq-c-curve ",
		height=0.27778,
		label="preseq-c-curve",
		pos="1172,135",
		rects="1127.5,125.5,1216.5,144.5",
		width=1.2361];
	extract_basename_2 -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 16 1183.89 628.55 1204.66 621.21 1227 608.17 1227 586 1227 586 1227 586 1227 449 1227 408.58 1250 401.42 1250 361 \
1250 361 1250 361 1250 179 1250 163.73 1238.39 153.84 1224.12 147.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1225.29 145.28 1217.88 144.98 1223.48 149.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1293.5 380.6 0 91 20 -output_file_basename ",
		label=output_file_basename,
		lp="1293.5,382.5",
		pos="e,1216.5,144.42 1183.9,628.55 1204.7,621.21 1227,608.17 1227,586 1227,586 1227,586 1227,449 1227,408.58 1250,401.42 1250,361 1250,\
361 1250,361 1250,179 1250,163.73 1238.4,153.84 1224.1,147.45"];
	extract_basename_2 -> "bowtie-se"	[_draw_="c 7 -#000000 B 7 1116.34 628.52 1103.26 625.4 1087.99 622.12 1074 620 1035.97 614.22 782.93 595.97 682.74 588.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 683.04 586.43 675.89 588.38 682.7 591.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1014.5 605.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="1014.5,607.5",
		pos="e,674.38,588.28 1116.3,628.52 1103.3,625.4 1088,622.12 1074,620 1036,614.22 782.93,595.97 682.74,588.87"];
	"filter-unmapped"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1011.5 440.5 1011.5 459.5 1106.5 459.5 1106.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1059 447.5 0 79 15 -filter-unmapped ",
		height=0.27778,
		label="filter-unmapped",
		pos="1059,450",
		rects="1011.5,440.5,1106.5,459.5",
		width=1.3194];
	extract_basename_2 -> "filter-unmapped"	[_draw_="c 7 -#000000 B 10 1150.05 628.71 1151.24 618.63 1153 601.1 1153 586 1153 586 1153 586 1153 494 1153 473.8 1134.83 463.05 1114.46 \
457.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1115.13 454.99 1107.75 455.69 1113.96 459.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1186.5 538.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="1186.5,540",
		pos="e,1106.3,455.33 1150.1,628.71 1151.2,618.63 1153,601.1 1153,586 1153,586 1153,586 1153,494 1153,473.8 1134.8,463.05 1114.5,457.35"];
	extract_basename_2 -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 13 1204.06 628.6 1214.07 624.9 1223.65 619.59 1231 612 1239.32 603.4 1238 597.97 1238 586 1238 586 1238 586 1238 \
404 1238 388.65 1226.83 378.78 1212.58 372.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1213.71 370.24 1206.3 369.97 1211.93 374.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1286.5 493.1 0 97 22 -input_output_filenames ",
		label=input_output_filenames,
		lp="1286.5,495",
		pos="e,1204.9,369.42 1204.1,628.6 1214.1,624.9 1223.7,619.59 1231,612 1239.3,603.4 1238,597.97 1238,586 1238,586 1238,586 1238,404 1238,\
388.65 1226.8,378.78 1212.6,372.43"];
	mapped_filtered_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 879.5 80.5 879.5 99.5 1040.5 99.5 1040.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 960 87.5 0 145 27 -mapped_filtered_reads_count ",
		height=0.27778,
		label=mapped_filtered_reads_count,
		pos="960,90",
		rects="879.5,80.5,1040.5,99.5",
		width=2.2361];
	mapped_filtered_reads_count -> output_read_count_mapped_filtered	[_draw_="c 7 -#000000 B 4 971.06 80.5 978.81 74.56 989.33 66.48 998.24 59.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 999.7 61.61 1003.76 55.4 996.71 57.72 ",
		pos="e,1005,54.478 971.06,80.505 978.81,74.556 989.33,66.481 998.24,59.637"];
	mark_duplicates -> output_picard_mark_duplicates_files	[_draw_="c 7 -#000000 B 13 811.54 305.61 804.28 297.49 795 284.47 795 271 795 271 795 271 795 89 795 74.23 777.39 83.35 763 80 722.65 70.6 \
676.81 62.08 641.1 55.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 641.52 53.51 634.21 54.75 640.7 58.34 ",
		pos="e,632.72,54.494 811.54,305.61 804.28,297.49 795,284.47 795,271 795,271 795,271 795,89 795,74.226 777.39,83.353 763,80 722.65,70.597 \
676.81,62.084 641.1,55.928"];
	mark_duplicates -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 7 828.55 305.63 834.16 300.33 841.77 293.46 849 288 850.87 286.59 852.85 285.19 854.86 283.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 855.88 286.08 860.42 280.21 853.21 281.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 868 290.6 0 38 10 -input_file ",
		label=input_file,
		lp="868,292.5",
		pos="e,861.68,279.39 828.55,305.63 834.16,300.33 841.77,293.46 849,288 850.87,286.59 852.85,285.19 854.86,283.82"];
	remove_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 832 170.5 832 189.5 942 189.5 942 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 887 177.5 0 94 17 -remove_duplicates ",
		height=0.27778,
		label=remove_duplicates,
		pos="887,180",
		rects="832,170.5,942,189.5",
		width=1.5278];
	remove_duplicates -> sort_dedup_bams	[_draw_="c 7 -#000000 B 7 895.39 170.7 901.33 165.16 909.69 157.99 918 153 921.03 151.18 924.3 149.47 927.62 147.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 928.59 150.14 934 145.07 926.61 145.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 937 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="937,157.5",
		pos="e,935.39,144.46 895.39,170.7 901.33,165.16 909.69,157.99 918,153 921.03,151.18 924.3,149.47 927.62,147.89"];
	"preseq-c-curve" -> output_preseq_c_curve_files	[_draw_="c 7 -#000000 B 10 1168.61 125.88 1164.32 114.19 1158.77 92.61 1170 80 1191.72 55.6 1283.76 68.25 1316 63 1327.64 61.1 1340.14 58.68 \
1351.76 56.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1352.21 58.66 1358.55 54.81 1351.2 53.87 ",
		pos="e,1360,54.497 1168.6,125.88 1164.3,114.19 1158.8,92.612 1170,80 1191.7,55.604 1283.8,68.249 1316,63 1327.6,61.105 1340.1,58.677 \
1351.8,56.254"];
	percent_uniq_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1170 80.5 1170 99.5 1282 99.5 1282 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1226 87.5 0 96 18 -percent_uniq_reads ",
		height=0.27778,
		label=percent_uniq_reads,
		pos="1226,90",
		rects="1170,80.5,1282,99.5",
		width=1.5556];
	"preseq-c-curve" -> percent_uniq_reads	[_draw_="c 7 -#000000 B 7 1175.44 125.84 1178.16 120.21 1182.42 112.89 1188 108 1189.96 106.28 1192.11 104.72 1194.38 103.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1195.13 105.67 1200.07 100.14 1192.75 101.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1235 110.6 0 94 22 -preseq_c_curve_outfile ",
		label=preseq_c_curve_outfile,
		lp="1235,112.5",
		pos="e,1201.4,99.405 1175.4,125.84 1178.2,120.21 1182.4,112.89 1188,108 1190,106.28 1192.1,104.72 1194.4,103.29"];
	bam_idxstats	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 681.5 125.5 681.5 144.5 764.5 144.5 764.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 723 132.5 0 67 12 -bam_idxstats ",
		height=0.27778,
		label=bam_idxstats,
		pos="723,135",
		rects="681.5,125.5,764.5,144.5",
		width=1.1528];
	percent_mitochondrial_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 603 80.5 603 99.5 761 99.5 761 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 682 87.5 0 142 27 -percent_mitochondrial_reads ",
		height=0.27778,
		label=percent_mitochondrial_reads,
		pos="682,90",
		rects="603,80.5,761,99.5",
		width=2.1944];
	bam_idxstats -> percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 715.09 125.71 709.54 119.88 701.96 111.93 695.46 105.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 697.53 103.74 690.93 100.36 693.98 107.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 722.5 110.6 0 33 8 -idxstats ",
		label=idxstats,
		lp="722.5,112.5",
		pos="e,689.88,99.265 715.09,125.71 709.54,119.88 701.96,111.93 695.46,105.12"];
	percent_uniq_reads -> output_percentage_uniq_reads	[_draw_="c 7 -#000000 B 10 1248.93 80.52 1259.72 76.92 1272.86 73.07 1285 71 1368.31 56.78 1391.06 72.91 1475 63 1488.8 61.37 1503.68 58.78 \
1517.17 56.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1517.51 58.53 1523.88 54.73 1516.53 53.73 ",
		pos="e,1525.4,54.433 1248.9,80.52 1259.7,76.915 1272.9,73.073 1285,71 1368.3,56.776 1391.1,72.91 1475,63 1488.8,61.371 1503.7,58.777 \
1517.2,56.102"];
	index_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1044.5 80.5 1044.5 99.5 1155.5 99.5 1155.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1100 87.5 0 95 16 -index_dedup_bams ",
		height=0.27778,
		label=index_dedup_bams,
		pos="1100,90",
		rects="1044.5,80.5,1155.5,99.5",
		width=1.5417];
	index_dedup_bams -> output_data_sorted_dedup_bam_files	[_draw_="c 7 -#000000 B 4 1122.92 80.5 1140.79 73.88 1165.79 64.61 1185.37 57.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1186 59.73 1191.71 55 1184.3 55.14 ",
		pos="e,1193.1,54.478 1122.9,80.505 1140.8,73.879 1165.8,64.614 1185.4,57.353"];
	mapped_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 307.5 80.5 307.5 99.5 428.5 99.5 428.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 368 87.5 0 105 18 -mapped_reads_count ",
		height=0.27778,
		label=mapped_reads_count,
		pos="368,90",
		rects="307.5,80.5,428.5,99.5",
		width=1.6806];
	mapped_reads_count -> output_read_count_mapped	[_draw_="c 7 -#000000 B 7 307.77 82.24 268.91 77.57 217.33 70.81 172 63 160.63 61.04 148.41 58.61 137.04 56.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 137.76 53.86 130.41 54.79 136.74 58.65 ",
		pos="e,128.93,54.471 307.77,82.235 268.91,77.568 217.33,70.811 172,63 160.63,61.04 148.41,58.612 137.04,56.209"];
	index_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 803 215.5 803 234.5 949 234.5 949 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 876 222.5 0 130 22 -index_dups_marked_bams ",
		height=0.27778,
		label=index_dups_marked_bams,
		pos="876,225",
		rects="803,215.5,949,234.5",
		width=2.0278];
	index_dups_marked_bams -> output_data_sorted_dups_marked_bam_files	[_draw_="c 7 -#000000 B 10 848.57 215.58 833.17 208.97 817 197.98 817 181 817 181 817 181 817 89 817 79.51 813.22 69.69 809.13 61.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 811.26 60.62 805.65 55.77 807.01 63.06 ",
		pos="e,804.89,54.458 848.57,215.58 833.17,208.97 817,197.98 817,181 817,181 817,181 817,89 817,79.51 813.22,69.691 809.13,61.837"];
	index_dups_marked_bams -> remove_duplicates	[_draw_="c 7 -#000000 B 4 878.12 215.71 879.46 210.47 881.24 203.53 882.85 197.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 885.15 198.12 884.51 190.73 880.4 196.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 901 200.6 0 38 10 -input_file ",
		label=input_file,
		lp="901,202.5",
		pos="e,884.89,189.27 878.12,215.71 879.46,210.47 881.24,203.53 882.85,197.24"];
	sam2bam -> sort_bams	[_draw_="c 7 -#000000 B 7 834.38 530.51 834.31 525.28 834.77 518.54 837 513 837.24 512.41 837.5 511.83 837.79 511.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 839.73 512.75 841.61 505.58 835.67 510.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 856 515.6 0 38 10 -input_file ",
		label=input_file,
		lp="856,517.5",
		pos="e,842.45,504.32 834.38,530.51 834.31,525.28 834.77,518.54 837,513 837.24,512.41 837.5,511.83 837.79,511.26"];
	index_filtered_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 942 350.5 942 369.5 1052 369.5 1052 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 997 357.5 0 94 18 -index_filtered_bam ",
		height=0.27778,
		label=index_filtered_bam,
		pos="997,360",
		rects="942,350.5,1052,369.5",
		width=1.5278];
	index_filtered_bam -> mark_duplicates	[_draw_="c 7 -#000000 B 7 969.68 350.55 951.69 345.15 927.56 338.2 906 333 895.96 330.58 885.2 328.25 874.81 326.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 875.4 323.75 868.06 324.77 874.44 328.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 957 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="957,337.5",
		pos="e,866.57,324.47 969.68,350.55 951.69,345.15 927.56,338.2 906,333 895.96,330.58 885.2,328.25 874.81,326.13"];
	percent_mitochondrial_reads -> output_percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 10 619.17 80.51 596.44 77.47 570.57 74.04 547 71 518.57 67.33 511.37 67.13 483 63 468.24 60.85 452.31 58.3 437.53 \
55.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 438.25 53.48 430.94 54.74 437.44 58.31 ",
		pos="e,429.45,54.49 619.17,80.514 596.44,77.472 570.57,74.044 547,71 518.57,67.328 511.37,67.135 483,63 468.24,60.848 452.31,58.301 437.53,\
55.843"];
	index_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 710 170.5 710 189.5 786 189.5 786 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 748 177.5 0 60 10 -index_bams ",
		height=0.27778,
		label=index_bams,
		pos="748,180",
		rects="710,170.5,786,189.5",
		width=1.0556];
	index_bams -> bam_idxstats	[_draw_="c 7 -#000000 B 4 743.18 170.71 740 165.24 735.73 157.9 731.94 151.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 734.2 150.39 728.57 145.57 729.97 152.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 746.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="746.5,157.5",
		pos="e,727.81,144.27 743.18,170.71 740,165.24 735.73,157.9 731.94,151.38"];
	"bowtie-se" -> output_bowtie_log	[_draw_="c 7 -#000000 B 13 609.58 582.94 580.71 580.05 543 570.61 543 541 543 541 543 541 543 89 543 60.08 312.39 68.54 284 63 275.9 61.42 \
267.3 59.21 259.27 56.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 260.02 54.56 252.61 54.91 258.62 59.26 ",
		pos="e,251.16,54.477 609.58,582.94 580.71,580.05 543,570.61 543,541 543,541 543,541 543,89 543,60.078 312.39,68.536 284,63 275.9,61.42 \
267.3,59.206 259.27,56.896"];
	"bowtie-se" -> mapped_reads_count	[_draw_="c 7 -#000000 B 10 609.65 584.08 550.06 583.36 429 577.4 429 541 429 541 429 541 429 134 429 119.7 417.67 109.74 404.77 103.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 405.82 100.82 398.44 100.09 403.76 105.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 451.5 335.6 0 45 10 -bowtie_log ",
		label=bowtie_log,
		lp="451.5,337.5",
		pos="e,397.07,99.454 609.65,584.08 550.06,583.36 429,577.4 429,541 429,541 429,541 429,134 429,119.7 417.67,109.74 404.77,103.04"];
	"bowtie-se" -> sam2bam	[_draw_="c 7 -#000000 B 4 674.3 576.8 707.29 569.45 758.58 558.03 794.31 550.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 794.81 552.46 801.11 548.55 793.75 547.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 774 560.6 0 38 10 -input_file ",
		label=input_file,
		lp="774,562.5",
		pos="e,802.59,548.22 674.3,576.8 707.29,569.45 758.58,558.03 794.31,550.06"];
	"filter-unmapped" -> filtered2sorted	[_draw_="c 7 -#000000 B 4 1059 440.71 1059 435.59 1059 428.85 1059 422.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1061.45 422.78 1059 415.78 1056.55 422.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1078 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="1078,427.5",
		pos="e,1059,414.27 1059,440.71 1059,435.59 1059,428.85 1059,422.67"];
	filtered2sorted -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 10 1059 395.76 1059 387.1 1059 373.09 1059 361 1059 361 1059 361 1059 179 1059 150.89 1089.92 140.42 1119.41 136.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1119.44 139.29 1126.16 136.15 1118.95 134.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1093 268.1 0 68 17 -input_sorted_file ",
		label=input_sorted_file,
		lp="1093,270",
		pos="e,1127.7,135.99 1059,395.76 1059,387.1 1059,373.09 1059,361 1059,361 1059,361 1059,179 1059,150.89 1089.9,140.42 1119.4,136.83"];
	filtered2sorted -> index_filtered_bam	[_draw_="c 7 -#000000 B 7 1032.09 395.59 1026.8 393.27 1021.51 390.43 1017 387 1013.03 383.98 1009.44 379.99 1006.43 376.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1008.55 374.81 1002.55 370.45 1004.53 377.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1036 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="1036,382.5",
		pos="e,1001.7,369.21 1032.1,395.59 1026.8,393.27 1021.5,390.43 1017,387 1013,383.98 1009.4,379.99 1006.4,376.05"];
	filtered2sorted -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 7 1062.04 395.71 1064.61 389.88 1068.86 382.35 1075 378 1077.72 376.07 1080.62 374.35 1083.64 372.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1084.56 375.1 1089.97 370.02 1082.58 370.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1107 380.6 0 64 15 -input_bam_files ",
		label=input_bam_files,
		lp="1107,382.5",
		pos="e,1091.4,369.41 1062,395.71 1064.6,389.88 1068.9,382.35 1075,378 1077.7,376.07 1080.6,374.35 1083.6,372.83"];
	sort_dups_marked_bams -> index_dups_marked_bams	[_draw_="c 7 -#000000 B 4 876 260.71 876 255.59 876 248.85 876 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 878.45 242.78 876 235.78 873.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 895 245.6 0 38 10 -input_file ",
		label=input_file,
		lp="895,247.5",
		pos="e,876,234.27 876,260.71 876,255.59 876,248.85 876,242.67"];
	sort_bams -> index_bams	[_draw_="c 7 -#000000 B 13 847.64 485.6 840.62 468.29 823.59 427.55 806 395 786.24 358.44 756 357.55 756 316 756 316 756 316 756 224 756 \
215.17 754.35 205.5 752.55 197.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 754.97 197.15 750.9 190.95 750.22 198.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 780 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="780,337.5",
		pos="e,750.53,189.48 847.64,485.6 840.62,468.29 823.59,427.55 806,395 786.24,358.44 756,357.55 756,316 756,316 756,316 756,224 756,215.17 \
754.35,205.5 752.55,197.56"];
	sort_bams -> "filter-unmapped"	[_draw_="c 7 -#000000 B 7 884.89 486.64 909.36 481.36 943.2 474.12 973 468 984.16 465.71 996.14 463.3 1007.51 461.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1007.79 463.49 1014.18 459.73 1006.84 458.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 992 470.6 0 38 10 -input_file ",
		label=input_file,
		lp="992,472.5",
		pos="e,1015.7,459.44 884.89,486.64 909.36,481.36 943.2,474.12 973,468 984.16,465.71 996.14,463.3 1007.5,461.05"];
	extract_basename_1 -> extract_basename_2	[_draw_="c 7 -#000000 B 7 954.42 701.67 989.74 696.34 1035.09 687.79 1074 675 1092.58 668.89 1112.48 659.18 1127.12 651.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1127.94 653.72 1132.92 648.22 1125.6 649.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1063 685.6 0 36 9 -file_path ",
		label=file_path,
		lp="1063,687.5",
		pos="e,1134.3,647.5 954.42,701.67 989.74,696.34 1035.1,687.79 1074,675 1092.6,668.89 1112.5,659.18 1127.1,651.37"];
	sort_dedup_bams -> mapped_filtered_reads_count	[_draw_="c 7 -#000000 B 4 960 125.71 960 120.59 960 113.85 960 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 962.45 107.78 960 100.78 957.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 990 110.6 0 60 14 -input_bam_file ",
		label=input_bam_file,
		lp="990,112.5",
		pos="e,960,99.265 960,125.71 960,120.59 960,113.85 960,107.67"];
	sort_dedup_bams -> index_dedup_bams	[_draw_="c 7 -#000000 B 7 991.43 125.54 1000.95 122.9 1011.43 119.91 1021 117 1036.24 112.37 1053.02 106.9 1067.18 102.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1067.89 104.52 1073.75 99.97 1066.34 99.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1068 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="1068,112.5",
		pos="e,1075.2,99.492 991.43,125.54 1001,122.9 1011.4,119.91 1021,117 1036.2,112.37 1053,106.9 1067.2,102.18"];
	execute_pcr_bottleneck_coef -> output_pbc_files	[_draw_="c 7 -#000000 B 13 1206 350.58 1223.69 344.5 1239 334.03 1239 316 1239 316 1239 316 1239 224 1239 218.93 1241.92 218 1246 215 1281.7 \
188.76 1567.07 90.48 1665.08 57.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1665.62 59.55 1671.46 54.97 1664.05 54.91 ",
		pos="e,1672.9,54.487 1206,350.58 1223.7,344.5 1239,334.03 1239,316 1239,316 1239,316 1239,224 1239,218.93 1241.9,218 1246,215 1281.7,\
188.76 1567.1,90.478 1665.1,57.141"];
}