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[label=\"hmm_hits\"];\n  \"asn_cache\" -> \"Map_HMM_Hits\" [label=\"asn_cache\"];\n  \"uniColl_cache\" -> \"Map_HMM_Hits\" [label=\"asn_cache\"];\n  \"asn_cache\" -> \"Map_HMM_Hits\" [label=\"seq_cache\"];\n  \"default13\" -> \"Map_HMM_Hits\" [label=\"no_compart\"];\n  \"default13\" [label=\"true\", fillcolor=\"#D5AEFC\"];\n  \"default14\" -> \"Map_HMM_Hits\" [label=\"align_fmt\"];\n  \"default14\" [label=\"\\\"seq-align\\\"\", fillcolor=\"#D5AEFC\"];\n  \"default15\" -> \"Map_HMM_Hits\" [label=\"expansion_ratio\"];\n  \"default15\" [label=\"0e+00\", fillcolor=\"#D5AEFC\"];\n  \"uniColl_cache\" -> \"Map_HMM_Hits\" [label=\"unicoll_cache\"];\n  \"default16\" -> \"Map_HMM_Hits\" [label=\"nogenbank\"];\n  \"default16\" [label=\"true\", fillcolor=\"#D5AEFC\"];\n  \"Get_off_frame_ORFs\" -> \"prot_ids\";\n  \"Extract_ORF_Proteins\" -> \"seqids\";\n  \"Map_HMM_Hits\" -> \"aligns\";\n  \"Run_GeneMark_Training\" -> \"out_hmm_params\";\n  \"Get_ORFs\" -> \"outseqs\";\n  \"Extract_ORF_Proteins\" -> \"proteins\";\n  \"Extract_ORF_Proteins\" -> \"lds2\";\n  \"Resolve_Annotation_Conflicts\" -> \"annotation\";\n  \"Search_All_HMMs_I\" -> \"hmm_hits\";\n  \"Run_GeneMark_Training_post\" -> \"models1\";\n  \"Resolve_Annotation_Conflicts\" -> \"protein_aligns\";\n}\n","licenseLink":"https://raw.githubusercontent.com/ncbi/pgap/6d04f5d65d1d4893706d9ae7e27341633333054f/LICENSE.md","permalink":"https://w3id.org/cwl/view/git/6d04f5d65d1d4893706d9ae7e27341633333054f/bacterial_annot/wf_bacterial_annot_pass1.cwl","packed":false,"visualisationXdot":"/graph/xdot/github.com/ncbi/pgap/blob/6d04f5d65d1d4893706d9ae7e27341633333054f/bacterial_annot/wf_bacterial_annot_pass1.cwl","visualisationPng":"/graph/png/github.com/ncbi/pgap/blob/6d04f5d65d1d4893706d9ae7e27341633333054f/bacterial_annot/wf_bacterial_annot_pass1.cwl","visualisationSvg":"/graph/svg/github.com/ncbi/pgap/blob/6d04f5d65d1d4893706d9ae7e27341633333054f/bacterial_annot/wf_bacterial_annot_pass1.cwl","roBundle":"/robundle/github.com/ncbi/pgap/blob/6d04f5d65d1d4893706d9ae7e27341633333054f/bacterial_annot/wf_bacterial_annot_pass1.cwl","licenseName":"https://raw.githubusercontent.com/ncbi/pgap/6d04f5d65d1d4893706d9ae7e27341633333054f/LICENSE.md"}