{"@id":"https://w3id.org/cwl/view/git/6d03a918639a69ddf6a7b93fe9f72128ef37edc3/definitions/subworkflows/pindel_cat.cwl","retrievedFrom":{"repoUrl":"https://github.com/genome/analysis-workflows.git","branch":"6d03a918639a69ddf6a7b93fe9f72128ef37edc3","path":"definitions/subworkflows/pindel_cat.cwl","packedId":null,"type":"GITHUB","rawUrl":"https://raw.githubusercontent.com/genome/analysis-workflows/6d03a918639a69ddf6a7b93fe9f72128ef37edc3/definitions/subworkflows/pindel_cat.cwl","url":"https://github.com/genome/analysis-workflows/blob/6d03a918639a69ddf6a7b93fe9f72128ef37edc3/definitions/subworkflows/pindel_cat.cwl"},"retrievedOn":"2026-10-23T03:21:08.716+00:00","lastCommit":"6d03a918639a69ddf6a7b93fe9f72128ef37edc3","label":"Per-region 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workflow {\n  graph [\n    bgcolor = \"#eeeeee\"\n    color = \"black\"\n    fontsize = \"10\"\n    labeljust = \"left\"\n    clusterrank = \"local\"\n    ranksep = \"0.22\"\n    nodesep = \"0.05\"\n  ]\n  node [\n    fontname = \"Helvetica\"\n    fontsize = \"10\"\n    fontcolor = \"black\"\n    shape = \"record\"\n    height = \"0\"\n    width = \"0\"\n    color = \"black\"\n    fillcolor = \"lightgoldenrodyellow\"\n    style = \"filled\"\n  ];\n  edge [\n    fontname=\"Helvetica\"\n    fontsize=\"8\"\n    fontcolor=\"black\"\n    color=\"black\"\n    arrowsize=\"0.7\"\n  ];\n  subgraph cluster_inputs {\n    rank = \"same\";\n    style = \"dashed\";\n    label = \"Workflow Inputs\";\n    \"tumor_bam\" [fillcolor=\"#94DDF4\",label=\"tumor_bam\"];\n    \"tumor_sample_name\" [fillcolor=\"#94DDF4\",label=\"tumor_sample_name\"];\n    \"region_file\" [fillcolor=\"#94DDF4\",label=\"region_file\"];\n    \"normal_sample_name\" [fillcolor=\"#94DDF4\",label=\"normal_sample_name\"];\n    \"insert_size\" [fillcolor=\"#94DDF4\",label=\"insert_size\"];\n    \"reference\" [fillcolor=\"#94DDF4\",label=\"reference\"];\n    \"reference\" [fillcolor=\"#94DDF4\",label=\"reference\"];\n    \"normal_bam\" [fillcolor=\"#94DDF4\",label=\"normal_bam\"];\n  }\n  subgraph cluster_outputs {\n    rank = \"same\";\n    style = \"dashed\";\n    labelloc = \"b\";\n    label = \"Workflow Outputs\";\n    \"per_region_pindel_out\" [fillcolor=\"#94DDF4\",label=\"per_region_pindel_out\"];\n  }\n  \"pindel\" [label=\"pindel v0.2.5b8\"];\n  \"cat\" [label=\"cat\"];\n  \"reference\" -> \"pindel\" [label=\"reference\"];\n  \"insert_size\" -> \"pindel\" [label=\"insert_size\"];\n  \"normal_bam\" -> \"pindel\" [label=\"normal_bam\"];\n  \"tumor_bam\" -> \"pindel\" [label=\"tumor_bam\"];\n  \"region_file\" -> \"pindel\" [label=\"region_file\"];\n  \"normal_sample_name\" -> \"pindel\" [label=\"normal_sample_name\"];\n  \"tumor_sample_name\" -> \"pindel\" [label=\"tumor_sample_name\"];\n  \"pindel\" -> \"cat\" [label=\"pindel_outs\"];\n  \"pindel\" -> \"cat\" [label=\"pindel_outs\"];\n  \"pindel\" -> \"cat\" [label=\"pindel_outs\"];\n  \"pindel\" -> \"cat\" [label=\"pindel_outs\"];\n  \"pindel\" -> \"cat\" [label=\"pindel_outs\"];\n  \"cat\" -> \"per_region_pindel_out\";\n}\n","licenseLink":"https://spdx.org/licenses/MIT","permalink":"https://w3id.org/cwl/view/git/6d03a918639a69ddf6a7b93fe9f72128ef37edc3/definitions/subworkflows/pindel_cat.cwl","packed":false,"visualisationXdot":"/graph/xdot/github.com/genome/analysis-workflows/blob/6d03a918639a69ddf6a7b93fe9f72128ef37edc3/definitions/subworkflows/pindel_cat.cwl","visualisationPng":"/graph/png/github.com/genome/analysis-workflows/blob/6d03a918639a69ddf6a7b93fe9f72128ef37edc3/definitions/subworkflows/pindel_cat.cwl","visualisationSvg":"/graph/svg/github.com/genome/analysis-workflows/blob/6d03a918639a69ddf6a7b93fe9f72128ef37edc3/definitions/subworkflows/pindel_cat.cwl","roBundle":"/robundle/github.com/genome/analysis-workflows/blob/6d03a918639a69ddf6a7b93fe9f72128ef37edc3/definitions/subworkflows/pindel_cat.cwl","licenseName":"MIT License"}