digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 458 522 458 522 0 ",
		bb="0,0,522,458",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 395 8 450 514 450 514 395 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 438 0 84 15 -Workflow Inputs ",
			bb="8,395,514,450",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,440.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		docm_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 94 403.5 94 422.5 158 422.5 158 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 126 410.5 0 48 8 -docm_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_vcf,
			pos="126,413",
			rects="94,403.5,158,422.5",
			width=0.88889];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 403.5 16.5 422.5 89.5 422.5 89.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 53 410.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="53,413",
			rects="16.5,403.5,89.5,422.5",
			width=1.0139];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 308 403.5 308 422.5 386 422.5 386 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 347 410.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="347,413",
			rects="308,403.5,386,422.5",
			width=1.0833];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 230 403.5 230 422.5 304 422.5 304 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 267 410.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="267,413",
			rects="230,403.5,304,422.5",
			width=1.0278];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 162.5 403.5 162.5 422.5 225.5 422.5 225.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 194 410.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="194,413",
			rects="162.5,403.5,225.5,422.5",
			width=0.875];
		filter_docm_variants	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 390 403.5 390 422.5 506 422.5 506 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 448 410.5 0 100 20 -filter_docm_variants ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filter_docm_variants,
			pos="448,413",
			rects="390,403.5,506,422.5",
			width=1.6111];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 235 8 235 63 361 63 361 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 289 15 0 92 16 -Workflow Outputs ",
			bb="235,8,361,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="289,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		docm_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 243.5 35.5 243.5 54.5 352.5 54.5 352.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 42.5 0 93 17 -docm_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_variants_vcf,
			pos="298,45",
			rects="243.5,35.5,352.5,54.5",
			width=1.5139];
	}
	GATK_haplotype_caller	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 113 350.5 113 369.5 263 369.5 263 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 188 357.5 0 134 26 -HaplotypeCaller (GATK 3.6) ",
		height=0.27778,
		label="HaplotypeCaller (GATK 3.6)",
		pos="188,360",
		rects="113,350.5,263,369.5",
		width=2.0833];
	docm_vcf -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 130.14 403.77 134.29 396.22 141.3 385.16 150 378 152.07 376.3 154.33 374.74 156.69 373.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 157.61 375.59 162.62 370.12 155.29 371.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 169.5 380.6 0 39 8 -docm_vcf ",
		label=docm_vcf,
		lp="169.5,382.5",
		pos="e,163.95,369.41 130.14,403.77 134.29,396.22 141.3,385.16 150,378 152.07,376.3 154.33,374.74 156.69,373.31"];
	docm_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 195.5 170.5 195.5 189.5 400.5 189.5 400.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 177.5 0 189 38 -Filter variants from the DoCM detector ",
		height=0.27778,
		label="Filter variants from the DoCM detector",
		pos="298,180",
		rects="195.5,170.5,400.5,189.5",
		width=2.8472];
	tumor_bam -> docm_filter	[_draw_="c 7 -#000000 B 10 56.55 403.51 60.4 393.52 66 376.35 66 361 66 361 66 361 66 224 66 197 127.5 186.41 187.17 182.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 187.22 184.93 194.06 182.06 186.92 180.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 89 290.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="89,292.5",
		pos="e,195.57,181.97 56.552,403.51 60.401,393.52 66,376.35 66,361 66,361 66,361 66,224 66,197 127.5,186.41 187.17,182.48"];
	tumor_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 67.45 403.63 80.94 396.09 101.82 385.13 121 378 127.31 375.65 134.06 373.52 140.77 371.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 141.02 374.09 147.13 369.89 139.74 369.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 130.5 380.6 0 19 3 -bam ",
		label=bam,
		lp="130.5,382.5",
		pos="e,148.59,369.49 67.448,403.63 80.941,396.09 101.82,385.13 121,378 127.31,375.65 134.06,373.52 140.77,371.62"];
	normal_bam -> docm_filter	[_draw_="c 7 -#000000 B 13 348.31 403.72 349.8 393.65 352 376.12 352 361 352 361 352 361 352 224 352 212.03 353.1 206.81 345 198 343.56 196.43 \
341.97 195.01 340.26 193.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 341.74 191.76 334.5 190.16 339.17 195.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377.5 290.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="377.5,292.5",
		pos="e,333.22,189.37 348.31,403.72 349.8,393.65 352,376.12 352,361 352,361 352,361 352,224 352,212.03 353.1,206.81 345,198 343.56,196.43 \
341.97,195.01 340.26,193.72"];
	normal_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 10 328.05 403.51 318.51 399 306.91 393.12 297 387 291.33 383.5 291.12 380.65 285 378 279.26 375.52 273.19 373.4 266.98 \
371.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 267.93 369.3 260.54 369.85 266.66 374.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 322.5 380.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="322.5,382.5",
		pos="e,259.08,369.45 328.05,403.51 318.51,399 306.91,393.12 297,387 291.33,383.5 291.12,380.65 285,378 279.26,375.52 273.19,373.4 266.98,\
371.59"];
	interval_list -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 258.52 403.8 249.35 395.05 235.22 381.91 229 378 226.06 376.15 222.89 374.43 219.66 372.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 220.86 370.7 213.47 370.03 218.83 375.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 262.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="262.5,382.5",
		pos="e,212.09,369.4 258.52,403.8 249.35,395.05 235.22,381.91 229,378 226.06,376.15 222.89,374.43 219.66,372.85"];
	reference -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 4 193.01 403.58 192.18 396.52 190.97 386.24 189.95 377.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 192.4 377.43 189.15 370.77 187.53 378.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 211 380.6 0 40 9 -reference ",
		label=reference,
		lp="211,382.5",
		pos="e,188.97,369.26 193.01,403.58 192.18,396.52 190.97,386.24 189.95,377.55"];
	filter_docm_variants -> docm_filter	[_draw_="c 7 -#000000 B 10 443.63 403.59 438.89 393.68 432 376.59 432 361 432 361 432 361 432 224 432 208.56 399.35 197.89 366.28 191.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 367.16 188.71 359.82 189.76 366.21 193.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 473 290.6 0 82 20 -filter_docm_variants ",
		label=filter_docm_variants,
		lp="473,292.5",
		pos="e,358.34,189.46 443.63,403.59 438.89,393.68 432,376.59 432,361 432,361 432,361 432,224 432,208.56 399.35,197.89 366.28,191.04"];
	index2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 267 80.5 267 99.5 329 99.5 329 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="298,90",
		rects="267,80.5,329,99.5",
		width=0.86111];
	index2 -> docm_variants_vcf	[_draw_="c 7 -#000000 B 4 298 80.71 298 75.59 298 68.85 298 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 300.45 62.78 298 55.78 295.55 62.78 ",
		pos="e,298,54.265 298,80.709 298,75.593 298,68.848 298,62.666"];
	bgzip2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 265.5 125.5 265.5 144.5 330.5 144.5 330.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 132.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="298,135",
		rects="265.5,125.5,330.5,144.5",
		width=0.90278];
	docm_filter -> bgzip2	[_draw_="c 7 -#000000 B 4 298 170.71 298 165.59 298 158.85 298 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 300.45 152.78 298 145.78 295.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 304.5 155.6 0 13 4 -file ",
		label=file,
		lp="304.5,157.5",
		pos="e,298,144.27 298,170.71 298,165.59 298,158.85 298,152.67"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 161.5 305.5 161.5 324.5 226.5 324.5 226.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 194 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="194,315",
		rects="161.5,305.5,226.5,324.5",
		width=0.90278];
	GATK_haplotype_caller -> bgzip	[_draw_="c 7 -#000000 B 4 189.16 350.71 189.87 345.59 190.81 338.85 191.67 332.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 194.1 333.04 192.64 325.76 189.24 332.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 197.5 335.6 0 13 4 -file ",
		label=file,
		lp="197.5,337.5",
		pos="e,192.85,324.27 189.16,350.71 189.87,345.59 190.81,338.85 191.67,332.67"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 203 260.5 203 279.5 265 279.5 265 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 234 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="234,270",
		rects="203,260.5,265,279.5",
		width=0.86111];
	decompose	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 202 215.5 202 234.5 306 234.5 306 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 254 222.5 0 88 16 -run vt decompose ",
		height=0.27778,
		label="run vt decompose",
		pos="254,225",
		rects="202,215.5,306,234.5",
		width=1.4444];
	index -> decompose	[_draw_="c 7 -#000000 B 4 237.86 260.71 240.35 255.36 243.67 248.22 246.65 241.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 248.79 243.02 249.52 235.64 244.34 240.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 251.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="251.5,247.5",
		pos="e,250.16,234.27 237.86,260.71 240.35,255.36 243.67,248.22 246.65,241.81"];
	decompose -> docm_filter	[_draw_="c 7 -#000000 B 7 257.51 215.53 260.08 210.05 264.01 203.03 269 198 270.44 196.55 272.03 195.18 273.7 193.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 274.72 196.16 279.14 190.21 271.97 192.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 308.5 200.6 0 79 17 -docm_raw_variants ",
		label=docm_raw_variants,
		lp="308.5,202.5",
		pos="e,280.39,189.36 257.51,215.53 260.08,210.05 264.01,203.03 269,198 270.44,196.55 272.03,195.18 273.7,193.89"];
	bgzip2 -> index2	[_draw_="c 7 -#000000 B 4 298 125.71 298 120.59 298 113.85 298 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 300.45 107.78 298 100.78 295.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 304.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="304.5,112.5",
		pos="e,298,99.265 298,125.71 298,120.59 298,113.85 298,107.67"];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 201.71 305.71 207.14 299.88 214.53 291.93 220.87 285.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 222.31 287.17 225.28 280.37 218.72 283.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 223.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="223.5,292.5",
		pos="e,226.31,279.27 201.71,305.71 207.14,299.88 214.53,291.93 220.87,285.12"];
}