digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 892 233 892 0 ",
		bb="0,0,892,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 98 170 98 225 884 225 884 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 148 213 0 84 15 -Workflow Inputs ",
			bb="98,170,884,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="148,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 106 178.5 106 197.5 180 197.5 180 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 143 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_plot,
			pos="143,188",
			rects="106,178.5,180,197.5",
			width=1.0278];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 184.5 178.5 184.5 197.5 241.5 197.5 241.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 213 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=diagram,
			pos="213,188",
			rects="184.5,178.5,241.5,197.5",
			width=0.79167];
		segment_filter	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 684.5 178.5 684.5 197.5 771.5 197.5 771.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 728 185.5 0 71 14 -segment_filter ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=segment_filter,
			pos="728,188",
			rects="684.5,178.5,771.5,197.5",
			width=1.2083];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 246 178.5 246 197.5 332 197.5 332 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 289 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="289,188",
			rects="246,178.5,332,197.5",
			width=1.1944];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 776 178.5 776 197.5 876 197.5 876 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 826 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="826,188",
			rects="776,178.5,876,197.5",
			width=1.3889];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 510.5 178.5 510.5 197.5 603.5 197.5 603.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 557 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=male_reference,
			pos="557,188",
			rects="510.5,178.5,603.5,197.5",
			width=1.2917];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 336.5 178.5 336.5 197.5 447.5 197.5 447.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 392 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=drop_low_coverage,
			pos="392,188",
			rects="336.5,178.5,447.5,197.5",
			width=1.5417];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 452 178.5 452 197.5 506 197.5 506 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 479 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="479,188",
			rects="452,178.5,506,197.5",
			width=0.75];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 607.5 178.5 607.5 197.5 680.5 197.5 680.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 644 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="644,188",
			rects="607.5,178.5,680.5,197.5",
			width=1.0139];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 828 63 828 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,828,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 369.5 35.5 369.5 54.5 500.5 54.5 500.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 435 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="435,45",
			rects="369.5,35.5,500.5,54.5",
			width=1.8194];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 504.5 35.5 504.5 54.5 653.5 54.5 653.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 579 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="579,45",
			rects="504.5,35.5,653.5,54.5",
			width=2.0694];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 657.5 35.5 657.5 54.5 748.5 54.5 748.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 703 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="703,45",
			rects="657.5,35.5,748.5,54.5",
			width=1.2639];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 35.5 16 54.5 90 54.5 90 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 53 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="53,45",
			rects="16,35.5,90,54.5",
			width=1.0278];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 94 35.5 94 54.5 222 54.5 222 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 158 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="158,45",
			rects="94,35.5,222,54.5",
			width=1.7778];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 752.5 35.5 752.5 54.5 819.5 54.5 819.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 786 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="786,45",
			rects="752.5,35.5,819.5,54.5",
			width=0.93056];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 226.5 35.5 226.5 54.5 365.5 54.5 365.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 296 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="296,45",
			rects="226.5,35.5,365.5,54.5",
			width=1.9306];
	}
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 396.5 125.5 396.5 144.5 473.5 144.5 473.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 435 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="435,135",
		rects="396.5,125.5,473.5,144.5",
		width=1.0694];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 155.09 178.6 167.5 170.47 187.66 158.59 207 153 239.82 143.51 331.62 139.1 388.22 137.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 388.21 139.67 395.13 137 388.06 134.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 231.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="231.5,157.5",
		pos="e,396.64,136.95 155.09,178.6 167.5,170.47 187.66,158.59 207,153 239.82,143.51 331.62,139.1 388.22,137.22"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 226.21 178.56 239.49 170.53 260.84 158.82 281 153 316.08 142.87 357.25 138.71 388.2 137.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 388.26 139.48 395.13 136.69 388.02 134.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 298 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="298,157.5",
		pos="e,396.64,136.61 226.21,178.56 239.49,170.53 260.84,158.82 281,153 316.08,142.87 357.25,138.71 388.2,137.03"];
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 507.5 80.5 507.5 99.5 802.5 99.5 802.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 655 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="655,90",
		rects="507.5,80.5,802.5,99.5",
		width=4.0972];
	segment_filter -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 721.84 178.51 713.09 166.51 696.53 143.92 682 125 677.12 118.64 671.63 111.69 666.88 105.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 668.97 104.43 662.68 100.5 665.15 107.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 725.5 133.1 0 59 14 -segment_filter ",
		label=segment_filter,
		lp="725.5,135",
		pos="e,661.73,99.323 721.84,178.51 713.09,166.51 696.53,143.92 682,125 677.12,118.64 671.63,111.69 666.88,105.75"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 7 296.81 178.53 304.64 170.59 317.47 159.06 331 153 348.81 145.02 369.83 140.74 388.3 138.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 388.39 140.91 395.08 137.71 387.85 136.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 360.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="360.5,157.5",
		pos="e,396.58,137.55 296.81,178.53 304.64,170.59 317.47,159.06 331,153 348.81,145.02 369.83,140.74 388.3,138.46"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 818.64 178.6 806.7 165.45 781.85 139.97 756 125 738.64 114.95 717.88 107.32 699.7 101.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 700.41 99.51 693.01 99.92 699.05 104.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 810.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="810.5,135",
		pos="e,691.55,99.495 818.64,178.6 806.7,165.45 781.85,139.97 756,125 738.64,114.95 717.88,107.32 699.7,101.85"];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 568.72 178.56 574.76 173.97 582.08 168.01 588 162 602.67 147.12 602.71 140.25 617 125 623.54 118.02 631.32 110.88 \
638.14 104.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 639.66 106.88 643.4 100.47 636.48 103.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 649 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="649,135",
		pos="e,644.55,99.487 568.72,178.56 574.76,173.97 582.08,168.01 588,162 602.67,147.12 602.71,140.25 617,125 623.54,118.02 631.32,110.88 \
638.14,104.96"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 7 547.53 178.78 538.11 171.03 522.95 159.64 508 153 499.71 149.32 490.53 146.39 481.55 144.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 482.25 141.71 474.87 142.45 481.1 146.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 555 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="555,157.5",
		pos="e,473.4,142.1 547.53,178.78 538.11,171.03 522.95,159.64 508,153 499.71,149.32 490.53,146.39 481.55,144.06"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 390.49 178.62 389.64 171.19 389.64 160.38 395 153 395.96 151.67 397.05 150.45 398.24 149.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 399.46 151.46 403.63 145.33 396.55 147.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 434.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="434.5,157.5",
		pos="e,404.85,144.42 390.49,178.62 389.64,171.19 389.64,160.38 395,153 395.96,151.67 397.05,150.45 398.24,149.32"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 479 178.57 478.58 171.09 476.87 160.26 471 153 469.83 151.56 468.52 150.23 467.09 149.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 468.71 147.15 461.56 145.19 465.93 151.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 491 155.6 0 32 6 -method ",
		label=method,
		lp="491,157.5",
		pos="e,460.31,144.33 479,178.57 478.58,171.09 476.87,160.26 471,153 469.83,151.56 468.52,150.23 467.09,149.02"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 7 633.55 178.72 622.8 170.68 605.23 158.87 588 153 553.66 141.31 512.72 137.24 481.84 135.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 481.99 133.54 474.92 135.76 481.83 138.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 630 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="630,157.5",
		pos="e,473.4,135.71 633.55,178.72 622.8,170.68 605.23,158.87 588,153 553.66,141.31 512.72,137.24 481.84,135.99"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 7 690.69 80.57 708.43 76.02 730.07 69.91 749 63 753.13 61.49 757.43 59.71 761.58 57.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 762.57 60.13 767.92 55 760.53 55.67 ",
		pos="e,769.29,54.368 690.69,80.572 708.43,76.019 730.07,69.914 749,63 753.13,61.492 757.43,59.714 761.58,57.887"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 4 435 125.56 435 111.14 435 81.48 435 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 437.45 62.8 435 55.8 432.55 62.8 ",
		pos="e,435,54.284 435,125.56 435,111.14 435,81.476 435,62.727"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 7 440.37 125.71 449.53 112.22 469.5 85.57 493 71 502.68 65 513.86 60.39 524.88 56.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 525.41 59.26 531.41 54.91 524 54.57 ",
		pos="e,532.86,54.48 440.37,125.71 449.53,112.22 469.5,85.566 493,71 502.68,65.002 513.86,60.39 524.88,56.862"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 10 444.77 125.52 460.87 111.73 492.57 85.4 506 80 567.43 55.3 589.45 77.72 654 63 660.54 61.51 667.43 59.44 673.91 \
57.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 674.61 59.62 680.4 54.99 672.99 54.99 ",
		pos="e,681.83,54.485 444.77,125.52 460.87,111.73 492.57,85.402 506,80 567.43,55.3 589.45,77.717 654,63 660.54,61.508 667.43,59.444 673.91,\
57.267"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 7 396.54 128.48 332.74 118.77 201.39 96.44 94 63 88.98 61.44 83.72 59.5 78.71 57.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 79.91 55.34 72.5 54.92 78.03 59.87 ",
		pos="e,71.106,54.343 396.54,128.48 332.74,118.77 201.39,96.441 94,63 88.979,61.436 83.721,59.498 78.709,57.496"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 4 408.44 125.56 357.98 109.53 248.29 74.68 192.33 56.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 193.34 54.66 185.92 54.87 191.85 59.33 ",
		pos="e,184.48,54.412 408.44,125.56 357.98,109.53 248.29,74.685 192.33,56.907"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 421.67 125.56 397.22 110.08 345.06 77.06 316.22 58.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 317.59 56.77 310.36 55.09 314.97 60.91 ",
		pos="e,309.08,54.284 421.67,125.56 397.22,110.08 345.06,77.061 316.22,58.802"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 468.03 125.57 495.76 118.52 531.97 109.39 539 108 552.52 105.33 567 102.88 580.99 100.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 581.11 103.18 587.67 99.71 580.38 98.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 554.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="554.5,112.5",
		pos="e,589.16,99.487 468.03,125.57 495.76,118.52 531.97,109.39 539,108 552.52,105.33 567,102.88 580.99,100.72"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 473.41 132.93 500.22 131.25 536.52 127.11 567 117 574.74 114.43 575.4 110.97 583 108 589.28 105.55 596.01 103.39 \
602.74 101.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 603.01 103.97 609.15 99.8 601.76 99.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 598 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="598,112.5",
		pos="e,610.61,99.415 473.41,132.93 500.22,131.25 536.52,127.11 567,117 574.74,114.43 575.4,110.97 583,108 589.28,105.55 596.01,103.39 \
602.74,101.5"];
}