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[fillcolor=\"#94DDF4\",label=\"mutect_scatter_count\"];\n    \"tumor_sample_name\" [fillcolor=\"#94DDF4\",label=\"tumor_sample_name\"];\n    \"tumor_name\" [fillcolor=\"#94DDF4\",label=\"tumor_name\"];\n    \"vep_ensembl_version\" [fillcolor=\"#94DDF4\",label=\"vep_ensembl_version\"];\n    \"normal_sample_name\" [fillcolor=\"#94DDF4\",label=\"normal_sample_name\"];\n    \"tumor_sequence\" [fillcolor=\"#94DDF4\",label=\"tumor_sequence\"];\n    \"per_target_intervals\" [fillcolor=\"#94DDF4\",label=\"per_target_intervals\"];\n    \"somalier_vcf\" [fillcolor=\"#94DDF4\",label=\"somalier_vcf\"];\n    \"omni_vcf\" [fillcolor=\"#94DDF4\",label=\"omni_vcf\"];\n    \"variants_to_table_fields\" [fillcolor=\"#94DDF4\",label=\"variants_to_table_fields\"];\n    \"mills\" [fillcolor=\"#94DDF4\",label=\"mills\"];\n    \"qc_minimum_mapping_quality\" [fillcolor=\"#94DDF4\",label=\"qc_minimum_mapping_quality\"];\n    \"qc_minimum_base_quality\" [fillcolor=\"#94DDF4\",label=\"qc_minimum_base_quality\"];\n    \"varscan_max_normal_freq\" [fillcolor=\"#94DDF4\",label=\"varscan_max_normal_freq\"];\n    \"vep_ensembl_species\" [fillcolor=\"#94DDF4\",label=\"vep_ensembl_species\"];\n    \"vep_to_table_fields\" [fillcolor=\"#94DDF4\",label=\"vep_to_table_fields\"];\n    \"strelka_cpu_reserved\" [fillcolor=\"#94DDF4\",label=\"strelka_cpu_reserved\"];\n    \"filter_docm_variants\" [fillcolor=\"#94DDF4\",label=\"filter_docm_variants\"];\n    \"germline_tsv_prefix\" [fillcolor=\"#94DDF4\",label=\"germline_tsv_prefix\"];\n    \"germline_variants_to_table_genotype_fields\" [fillcolor=\"#94DDF4\",label=\"germline_variants_to_table_genotype_fields\"];\n    \"vep_cache_dir\" [fillcolor=\"#94DDF4\",label=\"vep_cache_dir\"];\n  }\n  subgraph cluster_outputs {\n    rank = \"same\";\n    style = \"dashed\";\n    labelloc = \"b\";\n    label = \"Workflow Outputs\";\n    \"final_outputs\" [fillcolor=\"#94DDF4\",label=\"final_outputs\"];\n  }\n  \"aml_trio\" [label=\"Replace legacy AML Trio Assay\", fillcolor=\"#F3CEA1\"];\n  \"gatherer\" [label=\"gatherer\"];\n  \"followup_name\" -> \"aml_trio\" [label=\"followup_name\"];\n  \"followup_sequence\" -> \"aml_trio\" [label=\"followup_sequence\"];\n  \"known_indels\" -> \"aml_trio\" [label=\"known_indels\"];\n  \"bait_intervals\" -> \"aml_trio\" [label=\"bait_intervals\"];\n  \"reference\" -> \"aml_trio\" [label=\"reference\"];\n  \"cle_vcf_filter\" -> \"aml_trio\" [label=\"cle_vcf_filter\"];\n  \"normal_name\" -> \"aml_trio\" [label=\"normal_name\"];\n  \"disclaimer_text\" -> \"aml_trio\" [label=\"disclaimer_text\"];\n  \"docm_vcf\" -> \"aml_trio\" [label=\"docm_vcf\"];\n  \"germline_vep_to_table_fields\" -> \"aml_trio\" [label=\"germline_vep_to_table_fields\"];\n  \"filter_minimum_depth\" -> \"aml_trio\" [label=\"filter_minimum_depth\"];\n  \"mutect_scatter_count\" -> \"aml_trio\" [label=\"mutect_scatter_count\"];\n  \"varscan_min_var_freq\" -> \"aml_trio\" [label=\"varscan_min_var_freq\"];\n  \"variants_to_table_fields\" -> \"aml_trio\" [label=\"variants_to_table_fields\"];\n  \"vep_cache_dir\" -> \"aml_trio\" [label=\"vep_cache_dir\"];\n  \"dbsnp_vcf\" -> \"aml_trio\" [label=\"dbsnp_vcf\"];\n  \"normal_sequence\" -> \"aml_trio\" [label=\"normal_sequence\"];\n  \"disclaimer_version\" -> \"aml_trio\" [label=\"disclaimer_version\"];\n  \"mills\" -> \"aml_trio\" [label=\"mills\"];\n  \"vep_to_table_fields\" -> \"aml_trio\" [label=\"vep_to_table_fields\"];\n  \"germline_tsv_prefix\" -> \"aml_trio\" [label=\"germline_tsv_prefix\"];\n  \"strelka_cpu_reserved\" -> \"aml_trio\" [label=\"strelka_cpu_reserved\"];\n  \"vep_ensembl_species\" -> \"aml_trio\" [label=\"vep_ensembl_species\"];\n  \"filter_docm_variants\" -> \"aml_trio\" [label=\"filter_docm_variants\"];\n  \"variant_reporting_intervals\" -> \"aml_trio\" [label=\"variant_reporting_intervals\"];\n  \"germline_variants_to_table_genotype_fields\" -> \"aml_trio\" [label=\"germline_variants_to_table_genotype_fields\"];\n  \"per_base_intervals\" -> \"aml_trio\" [label=\"per_base_intervals\"];\n  \"omni_vcf\" -> \"aml_trio\" [label=\"omni_vcf\"];\n  \"tumor_name\" -> \"aml_trio\" [label=\"tumor_name\"];\n  \"pindel_insert_size\" -> \"aml_trio\" [label=\"pindel_insert_size\"];\n  \"target_intervals\" -> \"aml_trio\" [label=\"target_intervals\"];\n  \"vep_ensembl_assembly\" -> \"aml_trio\" [label=\"vep_ensembl_assembly\"];\n  \"vep_ensembl_version\" -> \"aml_trio\" [label=\"vep_ensembl_version\"];\n  \"gvcf_gq_bands\" -> \"aml_trio\" [label=\"gvcf_gq_bands\"];\n  \"annotate_coding_only\" -> \"aml_trio\" [label=\"annotate_coding_only\"];\n  \"pindel_region_file\" -> \"aml_trio\" [label=\"pindel_region_file\"];\n  \"varscan_p_value\" -> \"aml_trio\" [label=\"varscan_p_value\"];\n  \"varscan_strand_filter\" -> \"aml_trio\" [label=\"varscan_strand_filter\"];\n  \"varscan_max_normal_freq\" -> \"aml_trio\" [label=\"varscan_max_normal_freq\"];\n  \"varscan_min_coverage\" -> \"aml_trio\" [label=\"varscan_min_coverage\"];\n  \"intervals\" -> \"aml_trio\" [label=\"intervals\"];\n  \"qc_minimum_mapping_quality\" -> \"aml_trio\" [label=\"qc_minimum_mapping_quality\"];\n  \"variants_to_table_genotype_fields\" -> \"aml_trio\" [label=\"variants_to_table_genotype_fields\"];\n  \"tumor_sample_name\" -> \"aml_trio\" [label=\"tumor_sample_name\"];\n  \"tumor_sequence\" -> \"aml_trio\" [label=\"tumor_sequence\"];\n  \"somalier_vcf\" -> \"aml_trio\" [label=\"somalier_vcf\"];\n  \"qc_minimum_base_quality\" -> \"aml_trio\" [label=\"qc_minimum_base_quality\"];\n  \"per_target_intervals\" -> \"aml_trio\" [label=\"per_target_intervals\"];\n  \"germline_coding_only\" -> \"aml_trio\" [label=\"germline_coding_only\"];\n  \"vep_custom_annotations\" -> \"aml_trio\" [label=\"vep_custom_annotations\"];\n  \"bqsr_intervals\" -> \"aml_trio\" [label=\"bqsr_intervals\"];\n  \"picard_metric_accumulation_level\" -> \"aml_trio\" [label=\"picard_metric_accumulation_level\"];\n  \"normal_sample_name\" -> \"aml_trio\" [label=\"normal_sample_name\"];\n  \"summary_intervals\" -> \"aml_trio\" [label=\"summary_intervals\"];\n  \"interval_list\" -> \"aml_trio\" [label=\"interval_list\"];\n  \"vep_pick\" -> \"aml_trio\" [label=\"vep_pick\"];\n  \"germline_variants_to_table_fields\" -> \"aml_trio\" [label=\"germline_variants_to_table_fields\"];\n  \"emit_reference_confidence\" -> \"aml_trio\" [label=\"emit_reference_confidence\"];\n  \"synonyms_file\" -> \"aml_trio\" [label=\"synonyms_file\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" 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[label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"aml_trio\" -> \"gatherer\" [label=\"all_files\"];\n  \"output_dir\" -> \"gatherer\" [label=\"output_dir\"];\n  \"gatherer\" -> \"final_outputs\";\n}\n","licenseLink":"https://spdx.org/licenses/MIT","permalink":"https://w3id.org/cwl/view/git/6bfb64375e7ebb6eb40f463ede86d8deccdb9eff/definitions/pipelines/aml_trio_cle_gathered.cwl","packed":false,"visualisationXdot":"/graph/xdot/github.com/genome/analysis-workflows/blob/6bfb64375e7ebb6eb40f463ede86d8deccdb9eff/definitions/pipelines/aml_trio_cle_gathered.cwl","visualisationPng":"/graph/png/github.com/genome/analysis-workflows/blob/6bfb64375e7ebb6eb40f463ede86d8deccdb9eff/definitions/pipelines/aml_trio_cle_gathered.cwl","visualisationSvg":"/graph/svg/github.com/genome/analysis-workflows/blob/6bfb64375e7ebb6eb40f463ede86d8deccdb9eff/definitions/pipelines/aml_trio_cle_gathered.cwl","roBundle":"/robundle/github.com/genome/analysis-workflows/blob/6bfb64375e7ebb6eb40f463ede86d8deccdb9eff/definitions/pipelines/aml_trio_cle_gathered.cwl","licenseName":"MIT License"}