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		pos="e,860.27,228.89 452.78,268.55 461.78,265.47 472.28,262.22 482,260 537.95,247.25 552.84,248.1 610,243 690.33,235.83 780.75,231.61 \
852.1,229.16"];
	transcript_to_gene	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 725.5 80.5 725.5 99.5 868.5 99.5 868.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 797 87.5 0 127 26 -Kallisto: TranscriptToGene ",
		height=0.27778,
		label="Kallisto: TranscriptToGene",
		pos="797,90",
		rects="725.5,80.5,868.5,99.5",
		width=1.9861];
	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 10 97.05 268.71 98.24 258.63 100 241.1 100 226 100 226 100 226 100 134 100 103.37 534.58 94.3 717.43 91.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 717.2 94.29 724.17 91.75 717.14 89.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 160.5 178.1 0 121 28 -gene_transcript_lookup_table ",
		label=gene_transcript_lookup_table,
		lp="160.5,180",
		pos="e,725.68,91.732 97.051,268.71 98.236,258.63 100,241.1 100,226 100,226 100,226 100,134 100,103.37 534.58,94.3 717.43,91.841"];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 7 1542.05 268.82 1542.04 246.65 1540.98 186.04 1530 170 1523.29 160.19 1512.83 153.01 1502.24 147.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1503.34 145.66 1495.95 145.06 1501.36 150.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1583.5 200.6 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="1583.5,202.5",
		pos="e,1494.6,144.45 1542.1,268.82 1542,246.65 1541,186.04 1530,170 1523.3,160.19 1512.8,153.01 1502.2,147.86"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 576.74 268.58 588.62 265.55 602.38 262.31 615 260 630.52 257.16 740.3 244.54 756 243 787 239.96 820.46 237.16 \
851.82 234.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 851.87 237.2 858.67 234.22 851.5 232.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 765.5 245.6 0 19 3 -bam ",
		label=bam,
		lp="765.5,247.5",
		pos="e,860.18,234.11 576.74,268.58 588.62,265.55 602.38,262.31 615,260 630.52,257.16 740.3,244.54 756,243 787,239.96 820.46,237.16 851.82,\
234.75"];
	read_group_fields -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1351.74 268.53 1342.05 265.34 1330.61 262 1320 260 1271.83 250.93 1255.91 269.18 1210 252 1203.76 249.66 1204.24 \
245.35 1198 243 1180.83 236.52 1145.53 232.51 1108.25 230.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1108.41 227.59 1101.27 229.59 1108.1 232.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1246.5 245.6 0 73 17 -read_group_fields ",
		label=read_group_fields,
		lp="1246.5,247.5",
		pos="e,1099.8,229.49 1351.7,268.53 1342.1,265.34 1330.6,262 1320,260 1271.8,250.93 1255.9,269.18 1210,252 1203.8,249.66 1204.2,245.35 \
1198,243 1180.8,236.52 1145.5,232.51 1108.2,230.03"];
	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 349.85 268.55 359.87 265.58 371.39 262.39 382 260 427.26 249.78 438.83 247.58 485 243 609.22 230.67 751.73 226.86 \
851.84 225.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 851.7 228.32 858.67 225.8 851.65 223.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 503.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="503.5,247.5",
		pos="e,860.19,225.79 349.85,268.55 359.87,265.58 371.39,262.39 382,260 427.26,249.78 438.83,247.58 485,243 609.22,230.67 751.73,226.86 \
851.84,225.87"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 722.41 268.62 744.4 260.75 779.05 249.27 810 243 824.73 240.02 840.29 237.55 855.77 235.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 855.72 237.99 862.35 234.67 855.1 233.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 853 245.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="853,247.5",
		pos="e,863.86,234.48 722.41,268.62 744.4,260.75 779.05,249.27 810,243 824.73,240.02 840.29,237.55 855.77,235.51"];
	refFlat -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1836.64 268.78 1833.97 258.76 1830 241.28 1830 226 1830 226 1830 226 1830 134 1830 113.68 1782.8 102.81 1738.74 \
97.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1739.31 94.68 1732.06 96.25 1738.71 99.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1843.5 178.1 0 27 7 -refFlat ",
		label=refFlat,
		lp="1843.5,180",
		pos="e,1730.6,96.069 1836.6,268.78 1834,258.76 1830,241.28 1830,226 1830,226 1830,226 1830,134 1830,113.68 1782.8,102.81 1738.7,97.079"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 7 1649.82 268.5 1649.04 252.69 1645.21 218.5 1627 198 1595.02 162 1539.78 146.78 1502.82 140.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1503.56 138.07 1496.26 139.38 1502.79 142.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1662 200.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="1662,202.5",
		pos="e,1494.8,139.14 1649.8,268.5 1649,252.69 1645.2,218.5 1627,198 1595,162 1539.8,146.78 1502.8,140.43"];
	kallisto_index -> kallisto	[_draw_="c 7 -#000000 B 7 242.35 268.57 250.26 265.54 259.45 262.3 268 260 510.24 194.72 808.43 155.77 927.39 141.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 927.47 144.3 934.14 141.06 926.9 139.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 570.5 200.6 0 55 14 -kallisto_index ",
		label=kallisto_index,
		lp="570.5,202.5",
		pos="e,935.64,140.88 242.35,268.57 250.26,265.54 259.45,262.3 268,260 510.24,194.72 808.43,155.77 927.39,141.84"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 4 974.44 125.56 964.63 110.67 944.12 79.56 931.86 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 934.19 60.04 928.29 55.55 930.1 62.74 ",
		pos="e,927.46,54.284 974.44,125.56 964.63,110.67 944.12,79.565 931.86,60.963"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 988.34 125.56 1003.32 110.41 1034.91 78.46 1053.17 59.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1054.57 62.06 1057.75 55.36 1051.08 58.62 ",
		pos="e,1058.8,54.284 988.34,125.56 1003.3,110.41 1034.9,78.458 1053.2,59.987"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 4 1000.04 125.56 1037.57 109.76 1118.51 75.68 1161.25 57.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1162.13 59.97 1167.63 55 1160.22 55.46 ",
		pos="e,1169,54.412 1000,125.56 1037.6,109.76 1118.5,75.68 1161.3,57.683"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 935.74 129.88 913.91 127.25 887.32 123.15 864 117 850.14 113.35 835.24 107.74 823.01 102.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 824.19 100.51 816.79 100.03 822.28 105.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 903.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="903.5,112.5",
		pos="e,815.4,99.434 935.74,129.88 913.91,127.25 887.32,123.15 864,117 850.14,113.35 835.24,107.74 823.01,102.66"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1330 170.5 1330 189.5 1440 189.5 1440 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1385 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="1385,180",
		rects="1330,170.5,1440,189.5",
		width=1.5278];
	merge -> stringtie	[_draw_="c 7 -#000000 B 4 1400.81 170.5 1412.53 164.2 1428.7 155.51 1441.87 148.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1442.89 150.67 1447.89 145.19 1440.57 146.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1441.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1441.5,157.5",
		pos="e,1449.2,144.48 1400.8,170.5 1412.5,164.2 1428.7,155.51 1441.9,148.43"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1339 125.5 1339 144.5 1431 144.5 1431 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1385 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="1385,135",
		rects="1339,125.5,1431,144.5",
		width=1.2778];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 1385 170.71 1385 165.59 1385 158.85 1385 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1387.45 152.78 1385 145.78 1382.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1394.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1394.5,157.5",
		pos="e,1385,144.27 1385,170.71 1385,165.59 1385,158.85 1385,152.67"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 797 80.71 797 75.59 797 68.85 797 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 799.45 62.78 797 55.78 794.55 62.78 ",
		pos="e,797,54.265 797,80.709 797,75.593 797,68.848 797,62.666"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 980 215.56 980 201.14 980 171.48 980 152.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 982.45 152.8 980 145.8 977.55 152.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 993 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="993,180",
		pos="e,980,144.28 980,215.56 980,201.14 980,171.48 980,152.73"];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 7 1099.62 222.08 1199 219.89 1327.75 215.47 1351 207 1358.23 204.37 1365.17 199.61 1370.87 194.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1372.22 196.97 1375.81 190.48 1368.96 193.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1377.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1377.5,202.5",
		pos="e,1376.9,189.47 1099.6,222.08 1199,219.89 1327.8,215.47 1351,207 1358.2,204.37 1365.2,199.61 1370.9,194.88"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 1458.1 125.56 1445.81 110.54 1420.01 79.01 1404.84 60.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1407.06 59.32 1400.74 55.46 1403.27 62.42 ",
		pos="e,1399.8,54.284 1458.1,125.56 1445.8,110.54 1420,79.013 1404.8,60.472"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 1472.57 125.56 1486.06 110.54 1514.36 79.01 1531.01 60.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1532.7 62.26 1535.55 55.41 1529.05 58.98 ",
		pos="e,1536.6,54.284 1472.6,125.56 1486.1,110.54 1514.4,79.013 1531,60.472"];
	index_bam -> final_bam	[_draw_="c 7 -#000000 B 4 1374.36 125.56 1355.08 110.28 1314.24 77.9 1291.04 59.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1292.64 57.65 1285.63 55.22 1289.6 61.49 ",
		pos="e,1284.4,54.284 1374.4,125.56 1355.1,110.28 1314.2,77.901 1291,59.509"];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 7 1430.77 125.7 1432.19 125.46 1433.61 125.23 1435 125 1488.77 116.17 1549.8 107.16 1595.34 100.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1595.57 103.07 1602.15 99.66 1594.88 98.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1550.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1550.5,112.5",
		pos="e,1603.7,99.444 1430.8,125.7 1432.2,125.46 1433.6,125.23 1435,125 1488.8,116.17 1549.8,107.16 1595.3,100.63"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 1669.01 80.71 1672.32 75.24 1676.76 67.9 1680.7 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1682.69 62.82 1684.22 55.56 1678.5 60.28 ",
		pos="e,1685,54.265 1669,80.709 1672.3,75.236 1676.8,67.899 1680.7,61.381"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 1659.18 80.71 1656 75.24 1651.73 67.9 1647.94 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1650.2 60.39 1644.57 55.57 1645.97 62.86 ",
		pos="e,1643.8,54.265 1659.2,80.709 1656,75.236 1651.7,67.899 1647.9,61.381"];
}