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	generate_qc_metrics	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1393 80.5 1393 99.5 1527 99.5 1527 80.5 ",
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		lp="1052,247.5",
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	transcript_to_gene	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 822.5 80.5 822.5 99.5 965.5 99.5 965.5 80.5 ",
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	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 10 136.14 268.58 193.48 256.28 292 233.98 292 226 292 226 292 226 292 134 292 108.11 650.9 96.57 814.46 92.65 ",
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	refFlat -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1623.87 268.63 1623.3 253.6 1620.57 221.43 1608 198 1581.25 148.16 1566.66 136.85 1518 108 1514.43 105.88 1510.57 \
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	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 1209.23 268.55 1195.36 264.5 1179.52 258.98 1166 252 1160.08 248.94 1159.96 245.99 1154 243 1149.67 240.83 1145.02 \
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	read_group_id -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1348.19 268.64 1339.92 265.47 1330.13 262.11 1321 260 1288.77 252.54 1277.77 264.13 1247 252 1240.8 249.55 1241.18 \
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		label=read_group_id,
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		label=StringTie,
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	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 4 1707.7 268.6 1693.13 245.53 1652.34 180.9 1633.62 151.24 ",
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		label=reference_annotation,
		lp="1712.5,202.5",
		pos="e,1629.2,144.18 1707.7,268.6 1693.1,245.53 1652.3,180.9 1633.6,151.24"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 7 1816.12 268.56 1806.68 252.84 1784.49 218.8 1758 198 1728.05 174.49 1687.74 157.39 1659.18 147.18 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1797 200.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="1797,202.5",
		pos="e,1651.5,144.48 1816.1,268.56 1806.7,252.84 1784.5,218.8 1758,198 1728,174.49 1687.7,157.39 1659.2,147.18"];
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		height=0.27778,
		label="Kallisto: Quant",
		pos="1096,135",
		rects="1051.5,125.5,1140.5,144.5",
		width=1.2361];
	kallisto_index -> kallisto	[_draw_="c 7 -#000000 B 7 241.87 268.64 249.87 265.54 259.26 262.24 268 260 555.58 186.16 911.39 151.21 1043.45 140.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1043.55 142.55 1050.32 139.53 1043.14 137.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 589.5 200.6 0 55 14 -kallisto_index ",
		label=kallisto_index,
		lp="589.5,202.5",
		pos="e,1051.8,139.4 241.87,268.64 249.87,265.54 259.26,262.24 268,260 555.58,186.16 911.39,151.21 1043.5,140.1"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1450.76 268.58 1438.83 265.43 1424.85 262.12 1412 260 1368.88 252.9 1354.86 267.5 1314 252 1307.77 249.64 1308.23 \
245.37 1302 243 1286.85 237.25 1256.73 233.44 1224.1 230.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1224.43 228.48 1217.27 230.41 1224.07 233.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1323.5 245.6 0 19 3 -bam ",
		label=bam,
		lp="1323.5,247.5",
		pos="e,1215.8,230.3 1450.8,268.58 1438.8,265.43 1424.8,262.12 1412,260 1368.9,252.9 1354.9,267.5 1314,252 1307.8,249.64 1308.2,245.37 \
1302,243 1286.8,237.25 1256.7,233.44 1224.1,230.91"];
	reference_index -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 454.16 268.59 463.46 265.28 474.62 261.84 485 260 510.4 255.5 693.66 262.97 717 252 721.84 249.72 720.17 245.3 \
725 243 736.07 237.72 865 232.71 967.8 229.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 967.66 231.97 974.58 229.31 967.51 227.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 758 245.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="758,247.5",
		pos="e,976.09,229.26 454.16,268.59 463.46,265.28 474.62,261.84 485,260 510.4,255.5 693.66,262.97 717,252 721.84,249.72 720.17,245.3 725,\
243 736.07,237.72 865,232.71 967.8,229.52"];
	strand -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1556.94 268.58 1543.52 259.85 1526 244.84 1526 226 1526 226 1526 226 1526 134 1526 119.23 1514.25 109.27 1500.67 \
102.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1501.79 100.5 1494.39 99.97 1499.84 105 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1539.5 178.1 0 27 6 -strand ",
		label=strand,
		lp="1539.5,180",
		pos="e,1493,99.371 1556.9,268.58 1543.5,259.85 1526,244.84 1526,226 1526,226 1526,226 1526,134 1526,119.23 1514.3,109.27 1500.7,102.69"];
	strand -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1561.61 268.66 1556.83 265.32 1550.93 261.84 1545 260 1501.88 246.63 1384.54 267.12 1342 252 1335.72 249.77 1336.24 \
245.34 1330 243 1310.11 235.56 1267.6 231.36 1224.19 228.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1224.42 226.55 1217.31 228.64 1224.17 231.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1355.5 245.6 0 27 6 -strand ",
		label=strand,
		lp="1355.5,247.5",
		pos="e,1215.8,228.56 1561.6,268.66 1556.8,265.32 1550.9,261.84 1545,260 1501.9,246.63 1384.5,267.12 1342,252 1335.7,249.77 1336.2,245.34 \
1330,243 1310.1,235.56 1267.6,231.36 1224.2,228.99"];
	strand -> kallisto	[_draw_="c 7 -#000000 B 10 1560.63 268.66 1555.98 265.57 1550.42 262.27 1545 260 1497.41 240.1 1368.73 220.72 1319 207 1250.38 188.06 1171.23 \
161.79 1128.11 147.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1129.08 144.84 1121.66 144.89 1127.5 149.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1332.5 200.6 0 27 6 -strand ",
		label=strand,
		lp="1332.5,202.5",
		pos="e,1120.2,144.4 1560.6,268.66 1556,265.57 1550.4,262.27 1545,260 1497.4,240.1 1368.7,220.72 1319,207 1250.4,188.06 1171.2,161.79 \
1128.1,147.09"];
	strand -> stringtie	[_draw_="c 7 -#000000 B 7 1576.06 268.5 1583.31 253.1 1598.7 219.44 1609 190 1613.37 177.52 1617.33 163.06 1620.08 152.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1622.42 153.01 1621.73 145.62 1617.66 151.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1618.5 200.6 0 27 6 -strand ",
		label=strand,
		lp="1618.5,202.5",
		pos="e,1622.1,144.15 1576.1,268.5 1583.3,253.1 1598.7,219.44 1609,190 1613.4,177.52 1617.3,163.06 1620.1,152.25"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 587.95 268.58 601.45 265.36 617.4 261.98 632 260 649.64 257.6 775.95 259.7 792 252 796.83 249.69 795.18 245.33 \
800 243 815.45 235.52 895.13 231.22 967.93 228.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 967.88 231.27 974.8 228.6 967.72 226.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 832 245.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="832,247.5",
		pos="e,976.31,228.55 587.95,268.58 601.45,265.36 617.4,261.98 632,260 649.64,257.6 775.95,259.7 792,252 796.83,249.69 795.18,245.33 800,\
243 815.45,235.52 895.13,231.22 967.93,228.82"];
	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 711.99 268.52 722.39 265.33 734.66 261.99 746 260 772.1 255.42 841.2 263.66 865 252 869.81 249.65 868.2 245.38 \
873 243 890.38 234.39 928.15 229.91 967.75 227.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 967.85 230.1 974.71 227.28 967.59 225.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 891.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="891.5,247.5",
		pos="e,976.22,227.2 711.99,268.52 722.39,265.33 734.66,261.99 746,260 772.1,255.42 841.2,263.66 865,252 869.81,249.65 868.2,245.38 873,\
243 890.38,234.39 928.15,229.91 967.75,227.65"];
	read_group_fields -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 822.87 268.54 832.5 265.51 843.68 262.28 854 260 878.98 254.49 888.45 264.08 911 252 915.72 249.47 914.23 245.42 \
919 243 928.78 238.03 946.77 234.51 967.66 232.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 967.93 234.46 974.61 231.25 967.39 229.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 955.5 245.6 0 73 17 -read_group_fields ",
		label=read_group_fields,
		lp="955.5,247.5",
		pos="e,976.12,231.08 822.87,268.54 832.5,265.51 843.68,262.28 854,260 878.98,254.49 888.45,264.08 911,252 915.72,249.47 914.23,245.42 \
919,243 928.78,238.03 946.77,234.51 967.66,232.02"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 894 80.71 894 75.59 894 68.85 894 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 896.45 62.78 894 55.78 891.55 62.78 ",
		pos="e,894,54.265 894,80.709 894,75.593 894,68.848 894,62.666"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1368 170.5 1368 189.5 1478 189.5 1478 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1423 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="1423,180",
		rects="1368,170.5,1478,189.5",
		width=1.5278];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1377 125.5 1377 144.5 1469 144.5 1469 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1423 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="1423,135",
		rects="1377,125.5,1469,144.5",
		width=1.2778];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 1423 170.71 1423 165.59 1423 158.85 1423 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1425.45 152.78 1423 145.78 1420.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1432.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1432.5,157.5",
		pos="e,1423,144.27 1423,170.71 1423,165.59 1423,158.85 1423,152.67"];
	merge -> stringtie	[_draw_="c 7 -#000000 B 4 1462.71 170.5 1498.51 162.85 1550.8 151.66 1586.04 144.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1586.36 146.56 1592.7 142.7 1585.34 141.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1550.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1550.5,157.5",
		pos="e,1594.2,142.38 1462.7,170.5 1498.5,162.85 1550.8,151.66 1586,144.12"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 1454.99 80.71 1451.68 75.24 1447.24 67.9 1443.3 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1445.5 60.28 1439.78 55.56 1441.31 62.82 ",
		pos="e,1439,54.265 1455,80.709 1451.7,75.236 1447.2,67.899 1443.3,61.381"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 1464.82 80.71 1468 75.24 1472.27 67.9 1476.06 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1478.03 62.86 1479.43 55.57 1473.8 60.39 ",
		pos="e,1480.2,54.265 1464.8,80.709 1468,75.236 1472.3,67.899 1476.1,61.381"];
	index_bam -> final_bam	[_draw_="c 7 -#000000 B 7 1413.22 125.6 1406.25 119.17 1397.06 109.78 1391 100 1383.69 88.2 1378.42 73.31 1375.14 62.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1377.55 61.7 1373.33 55.6 1372.83 63 ",
		pos="e,1372.9,54.143 1413.2,125.6 1406.2,119.17 1397.1,109.78 1391,100 1383.7,88.199 1378.4,73.311 1375.1,62.157"];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 4 1430.13 125.71 1435.05 120 1441.71 112.26 1447.49 105.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1449.19 107.32 1451.9 100.41 1445.48 104.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1453.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1453.5,112.5",
		pos="e,1452.9,99.265 1430.1,125.71 1435,120 1441.7,112.26 1447.5,105.54"];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 7 1215.91 222.27 1257.71 219.98 1304.72 215.51 1347 207 1363.34 203.71 1380.99 197.82 1395.17 192.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1396.02 194.78 1401.66 189.97 1394.25 190.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1389.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1389.5,202.5",
		pos="e,1403.1,189.43 1215.9,222.27 1257.7,219.98 1304.7,215.51 1347,207 1363.3,203.71 1381,197.82 1395.2,192.48"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 1096 215.56 1096 201.14 1096 171.48 1096 152.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1098.45 152.8 1096 145.8 1093.55 152.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1109 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="1109,180",
		pos="e,1096,144.28 1096,215.56 1096,201.14 1096,171.48 1096,152.73"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 1098.11 125.56 1101.73 111.07 1109.2 81.21 1113.88 62.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1116.24 63.14 1115.56 55.75 1111.49 61.95 ",
		pos="e,1115.9,54.284 1098.1,125.56 1101.7,111.07 1109.2,81.205 1113.9,62.471"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 4 1112.01 125.56 1141.76 109.88 1205.66 76.22 1240.02 58.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1240.89 60.42 1245.94 54.99 1238.61 56.09 ",
		pos="e,1247.3,54.284 1112,125.56 1141.8,109.88 1205.7,76.215 1240,58.11"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 4 1086.41 125.56 1069.12 110.35 1032.57 78.18 1011.62 59.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1013.42 58.07 1006.55 55.28 1010.19 61.75 ",
		pos="e,1005.4,54.284 1086.4,125.56 1069.1,110.35 1032.6,78.18 1011.6,59.747"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 1051.69 131.28 1024.84 128.94 990.09 124.68 960 117 946.2 113.48 931.39 107.83 919.31 102.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 920.59 100.58 913.19 100.03 918.63 105.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 999.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="999.5,112.5",
		pos="e,911.8,99.427 1051.7,131.28 1024.8,128.94 990.09,124.68 960,117 946.2,113.48 931.39,107.83 919.31,102.7"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 1619.21 125.56 1610.82 110.81 1593.38 80.11 1582.78 61.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1585.04 60.48 1579.45 55.6 1580.78 62.9 ",
		pos="e,1578.7,54.284 1619.2,125.56 1610.8,110.81 1593.4,80.114 1582.8,61.46"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 1633.68 125.56 1651.15 110.35 1688.07 78.18 1709.22 59.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1710.68 61.72 1714.35 55.28 1707.46 58.03 ",
		pos="e,1715.5,54.284 1633.7,125.56 1651.1,110.35 1688.1,78.18 1709.2,59.747"];
}