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style = \"dashed\";\n    label = \"Workflow Inputs\";\n    \"normal_cram\" [fillcolor=\"#94DDF4\",label=\"normal_cram\"];\n    \"insert_size\" [fillcolor=\"#94DDF4\",label=\"insert_size\"];\n    \"interval_list\" [fillcolor=\"#94DDF4\",label=\"interval_list\"];\n    \"reference\" [fillcolor=\"#94DDF4\",label=\"reference\"];\n    \"tumor_cram\" [fillcolor=\"#94DDF4\",label=\"tumor_cram\"];\n  }\n  subgraph cluster_outputs {\n    rank = \"same\";\n    style = \"dashed\";\n    labelloc = \"b\";\n    label = \"Workflow Outputs\";\n    \"unfiltered_vcf\" [fillcolor=\"#94DDF4\",label=\"unfiltered_vcf\"];\n    \"filtered_vcf\" [fillcolor=\"#94DDF4\",label=\"filtered_vcf\"];\n  }\n  \"get_chromosome_list\" [label=\"get_chromosome_list\"];\n  \"remove_end_tags\" [label=\"remove END INFO tags\"];\n  \"region_filter\" [label=\"SelectVariants (GATK 3.6)\"];\n  \"reindex\" [label=\"vcf index\"];\n  \"cat_all\" [label=\"cat_all\"];\n  \"somaticfilter\" [label=\"pindel somatic filter v1\"];\n  \"filter\" [label=\"fp_filter workflow\", fillcolor=\"#F3CEA1\"];\n  \"bgzip\" [label=\"bgzip VCF\"];\n  \"pindel_cat\" [label=\"Per-chromosome pindel\", fillcolor=\"#F3CEA1\"];\n  \"index\" [label=\"vcf index\"];\n  \"interval_list\" -> \"get_chromosome_list\" [label=\"interval_list\"];\n  \"region_filter\" -> \"remove_end_tags\" [label=\"vcf\"];\n  \"index\" -> \"region_filter\" [label=\"vcf\"];\n  \"reference\" -> \"region_filter\" [label=\"reference\"];\n  \"interval_list\" -> \"region_filter\" [label=\"interval_list\"];\n  \"remove_end_tags\" -> \"reindex\" [label=\"vcf\"];\n  \"pindel_cat\" -> \"cat_all\" [label=\"chromosome_pindel_outs\"];\n  \"cat_all\" -> \"somaticfilter\" [label=\"pindel_output_summary\"];\n  \"reference\" -> \"somaticfilter\" [label=\"reference\"];\n  \"reindex\" -> \"filter\" [label=\"vcf\"];\n  \"reference\" -> \"filter\" [label=\"reference\"];\n  \"tumor_cram\" -> \"filter\" [label=\"cram\"];\n  \"somaticfilter\" -> \"bgzip\" [label=\"file\"];\n  \"tumor_cram\" -> \"pindel_cat\" [label=\"tumor_cram\"];\n  \"reference\" -> \"pindel_cat\" [label=\"reference\"];\n  \"normal_cram\" -> \"pindel_cat\" [label=\"normal_cram\"];\n  \"insert_size\" -> \"pindel_cat\" [label=\"insert_size\"];\n  \"get_chromosome_list\" -> \"pindel_cat\" [label=\"chromosome\"];\n  \"bgzip\" -> \"index\" [label=\"vcf\"];\n  \"filter\" -> \"unfiltered_vcf\";\n  \"filter\" -> \"filtered_vcf\";\n}\n","licenseLink":"https://spdx.org/licenses/MIT","permalink":"https://w3id.org/cwl/view/git/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/pindel.cwl","packed":false,"visualisationXdot":"/graph/xdot/github.com/genome/analysis-workflows/blob/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/pindel.cwl","visualisationPng":"/graph/png/github.com/genome/analysis-workflows/blob/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/pindel.cwl","visualisationSvg":"/graph/svg/github.com/genome/analysis-workflows/blob/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/pindel.cwl","roBundle":"/robundle/github.com/genome/analysis-workflows/blob/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/pindel.cwl","licenseName":"MIT License"}