{"@id":"https://w3id.org/cwl/view/git/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/docm_cle.cwl","retrievedFrom":{"repoUrl":"https://github.com/genome/analysis-workflows.git","branch":"526df6d2937f92ecd00c3029748958faa692ac55","path":"definitions/subworkflows/docm_cle.cwl","packedId":null,"type":"GITHUB","rawUrl":"https://raw.githubusercontent.com/genome/analysis-workflows/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/docm_cle.cwl","url":"https://github.com/genome/analysis-workflows/blob/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/docm_cle.cwl"},"retrievedOn":"2026-10-19T00:11:15.189+00:00","lastCommit":"526df6d2937f92ecd00c3029748958faa692ac55","label":"Detect Docm 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   labeljust = \"left\"\n    clusterrank = \"local\"\n    ranksep = \"0.22\"\n    nodesep = \"0.05\"\n  ]\n  node [\n    fontname = \"Helvetica\"\n    fontsize = \"10\"\n    fontcolor = \"black\"\n    shape = \"record\"\n    height = \"0\"\n    width = \"0\"\n    color = \"black\"\n    fillcolor = \"lightgoldenrodyellow\"\n    style = \"filled\"\n  ];\n  edge [\n    fontname=\"Helvetica\"\n    fontsize=\"8\"\n    fontcolor=\"black\"\n    color=\"black\"\n    arrowsize=\"0.7\"\n  ];\n  subgraph cluster_inputs {\n    rank = \"same\";\n    style = \"dashed\";\n    label = \"Workflow Inputs\";\n    \"tumor_cram\" [fillcolor=\"#94DDF4\",label=\"tumor_cram\"];\n    \"reference\" [fillcolor=\"#94DDF4\",label=\"reference\"];\n    \"interval_list\" [fillcolor=\"#94DDF4\",label=\"interval_list\"];\n    \"docm_vcf\" [fillcolor=\"#94DDF4\",label=\"docm_vcf\"];\n    \"normal_cram\" [fillcolor=\"#94DDF4\",label=\"normal_cram\"];\n  }\n  subgraph cluster_outputs {\n    rank = \"same\";\n    style = 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\"docm_filter\" -> \"bgzip\" [label=\"file\"];\n  \"GATK_haplotype_caller\" -> \"unfiltered_vcf\";\n  \"index\" -> \"filtered_vcf\";\n}\n","licenseLink":"https://spdx.org/licenses/MIT","permalink":"https://w3id.org/cwl/view/git/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/docm_cle.cwl","packed":false,"visualisationXdot":"/graph/xdot/github.com/genome/analysis-workflows/blob/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/docm_cle.cwl","visualisationPng":"/graph/png/github.com/genome/analysis-workflows/blob/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/docm_cle.cwl","visualisationSvg":"/graph/svg/github.com/genome/analysis-workflows/blob/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/docm_cle.cwl","roBundle":"/robundle/github.com/genome/analysis-workflows/blob/526df6d2937f92ecd00c3029748958faa692ac55/definitions/subworkflows/docm_cle.cwl","licenseName":"MIT License"}