digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 7715 233 7715 0 ", bb="0,0,7715,233", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 7707 63 7707 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ", bb="8,8,7707,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="62,17.5", lwidth=1.28, rank=same, style=dashed ]; tumor_summary_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4722 35.5 4722 54.5 4878 54.5 4878 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4800 42.5 0 140 24 -tumor_summary_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_summary_hs_metrics, pos="4800,45", rects="4722,35.5,4878,54.5", width=2.1667]; 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normal_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3237 35.5 3237 54.5 3347 54.5 3347 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3292 42.5 0 94 17 -normal_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_hs_metrics, pos="3292,45", rects="3237,35.5,3347,54.5", width=1.5278]; tumor_per_target_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5332 35.5 5332 54.5 5492 54.5 5492 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5412 42.5 0 144 27 -tumor_per_target_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_per_target_hs_metrics, pos="5412,45", rects="5332,35.5,5492,54.5", width=2.2222]; docm_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2022 35.5 2022 54.5 2126 54.5 2126 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2074 42.5 0 88 17 -docm_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=docm_filtered_vcf, pos="2074,45", rects="2022,35.5,2126,54.5", width=1.4444]; varscan_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2130.5 35.5 2130.5 54.5 2245.5 54.5 2245.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2188 42.5 0 99 20 -varscan_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=varscan_filtered_vcf, pos="2188,45", rects="2130.5,35.5,2245.5,54.5", width=1.5972]; 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tumor_indel_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 190 35.5 190 54.5 366 54.5 366 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 278 42.5 0 160 29 -tumor_indel_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=tumor_indel_bam_readcount_tsv, pos="278,45", rects="190,35.5,366,54.5", width=2.4444]; intervals_target [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7043 35.5 7043 54.5 7137 54.5 7137 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7090 42.5 0 78 16 -intervals_target ", fillcolor="#94DDF4", height=0.27778, label=intervals_target, pos="7090,45", rects="7043,35.5,7137,54.5", width=1.3056]; vep_summary [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 370 35.5 370 54.5 456 54.5 456 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 413 42.5 0 70 11 -vep_summary ", fillcolor="#94DDF4", height=0.27778, label=vep_summary, pos="413,45", rects="370,35.5,456,54.5", width=1.1944]; tumor_target_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7141.5 35.5 7141.5 54.5 7272.5 54.5 7272.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7207 42.5 0 115 21 -tumor_target_coverage ", fillcolor="#94DDF4", height=0.27778, label=tumor_target_coverage, pos="7207,45", rects="7141.5,35.5,7272.5,54.5", width=1.8194]; tumor_verify_bam_id_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5496 35.5 5496 54.5 5658 54.5 5658 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5577 42.5 0 146 27 -tumor_verify_bam_id_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_verify_bam_id_metrics, pos="5577,45", rects="5496,35.5,5658,54.5", width=2.25]; normal_indel_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 460 35.5 460 54.5 642 54.5 642 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 551 42.5 0 166 30 -normal_indel_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=normal_indel_bam_readcount_tsv, pos="551,45", rects="460,35.5,642,54.5", width=2.5278]; pindel_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 646.5 35.5 646.5 54.5 765.5 54.5 765.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 706 42.5 0 103 21 -pindel_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=pindel_unfiltered_vcf, pos="706,45", rects="646.5,35.5,765.5,54.5", width=1.6528]; normal_target_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7277 35.5 7277 54.5 7413 54.5 7413 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7345 42.5 0 120 22 -normal_target_coverage ", fillcolor="#94DDF4", height=0.27778, label=normal_target_coverage, pos="7345,45", rects="7277,35.5,7413,54.5", width=1.8889]; normal_per_target_coverage_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3506.5 35.5 3506.5 54.5 3705.5 54.5 3705.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3606 42.5 0 183 34 -normal_per_target_coverage_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_per_target_coverage_metrics, pos="3606,45", rects="3506.5,35.5,3705.5,54.5", width=2.7639]; final_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 770 35.5 770 54.5 828 54.5 828 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 799 42.5 0 42 9 -final_vcf ", fillcolor="#94DDF4", height=0.27778, label=final_vcf, pos="799,45", rects="770,35.5,828,54.5", width=0.80556]; normal_per_base_coverage_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3709.5 35.5 3709.5 54.5 3902.5 54.5 3902.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3806 42.5 0 177 32 -normal_per_base_coverage_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_per_base_coverage_metrics, pos="3806,45", rects="3709.5,35.5,3902.5,54.5", width=2.6806]; tumor_cram [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5662 35.5 5662 54.5 5738 54.5 5738 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5700 42.5 0 60 10 -tumor_cram ", fillcolor="#94DDF4", height=0.27778, label=tumor_cram, pos="5700,45", rects="5662,35.5,5738,54.5", width=1.0556]; normal_per_target_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3906.5 35.5 3906.5 54.5 4071.5 54.5 4071.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3989 42.5 0 149 28 -normal_per_target_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_per_target_hs_metrics, pos="3989,45", rects="3906.5,35.5,4071.5,54.5", width=2.2917]; docm_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 832 35.5 832 54.5 948 54.5 948 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 890 42.5 0 100 19 -docm_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=docm_unfiltered_vcf, pos="890,45", rects="832,35.5,948,54.5", width=1.6111]; varscan_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 952.5 35.5 952.5 54.5 1079.5 54.5 1079.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1016 42.5 0 111 22 -varscan_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=varscan_unfiltered_vcf, pos="1016,45", rects="952.5,35.5,1079.5,54.5", width=1.7639]; tumor_per_base_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5742 35.5 5742 54.5 5896 54.5 5896 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5819 42.5 0 138 25 -tumor_per_base_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_per_base_hs_metrics, pos="5819,45", rects="5742,35.5,5896,54.5", width=2.1389]; tumor_mark_duplicates_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5900 35.5 5900 54.5 6074 54.5 6074 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5987 42.5 0 158 29 -tumor_mark_duplicates_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_mark_duplicates_metrics, pos="5987,45", rects="5900,35.5,6074,54.5", width=2.4167]; normal_summary_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4075.5 35.5 4075.5 54.5 4236.5 54.5 4236.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4156 42.5 0 145 25 -normal_summary_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_summary_hs_metrics, pos="4156,45", rects="4075.5,35.5,4236.5,54.5", width=2.2361]; mutect_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1083.5 35.5 1083.5 54.5 1194.5 54.5 1194.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1139 42.5 0 95 19 -mutect_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=mutect_filtered_vcf, pos="1139,45", rects="1083.5,35.5,1194.5,54.5", width=1.5417]; tumor_verify_bam_id_depth [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6078.5 35.5 6078.5 54.5 6231.5 54.5 6231.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6155 42.5 0 137 25 -tumor_verify_bam_id_depth ", fillcolor="#94DDF4", height=0.27778, label=tumor_verify_bam_id_depth, pos="6155,45", rects="6078.5,35.5,6231.5,54.5", width=2.125]; tumor_flagstats [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6235.5 35.5 6235.5 54.5 6328.5 54.5 6328.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6282 42.5 0 77 15 -tumor_flagstats ", fillcolor="#94DDF4", height=0.27778, label=tumor_flagstats, pos="6282,45", rects="6235.5,35.5,6328.5,54.5", width=1.2917]; normal_cram [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4240.5 35.5 4240.5 54.5 4321.5 54.5 4321.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4281 42.5 0 65 11 -normal_cram ", fillcolor="#94DDF4", height=0.27778, label=normal_cram, pos="4281,45", rects="4240.5,35.5,4321.5,54.5", width=1.125]; strelka_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1199 35.5 1199 54.5 1309 54.5 1309 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1254 42.5 0 94 20 -strelka_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=strelka_filtered_vcf, pos="1254,45", rects="1199,35.5,1309,54.5", width=1.5278]; normal_mark_duplicates_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2249.5 35.5 2249.5 54.5 2428.5 54.5 2428.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2339 42.5 0 163 30 -normal_mark_duplicates_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_mark_duplicates_metrics, pos="2339,45", rects="2249.5,35.5,2428.5,54.5", width=2.4861]; normal_flagstats [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2433 35.5 2433 54.5 2531 54.5 2531 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2482 42.5 0 82 16 -normal_flagstats ", fillcolor="#94DDF4", height=0.27778, label=normal_flagstats, pos="2482,45", rects="2433,35.5,2531,54.5", width=1.3611]; strelka_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1313 35.5 1313 54.5 1435 54.5 1435 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1374 42.5 0 106 22 -strelka_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=strelka_unfiltered_vcf, pos="1374,45", rects="1313,35.5,1435,54.5", width=1.6944]; tumor_bin_level_ratios [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7417 35.5 7417 54.5 7545 54.5 7545 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7481 42.5 0 112 22 -tumor_bin_level_ratios ", fillcolor="#94DDF4", height=0.27778, label=tumor_bin_level_ratios, pos="7481,45", rects="7417,35.5,7545,54.5", width=1.7778]; tumor_alignment_summary_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4326 35.5 4326 54.5 4520 54.5 4520 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4423 42.5 0 178 31 -tumor_alignment_summary_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_alignment_summary_metrics, pos="4423,45", rects="4326,35.5,4520,54.5", width=2.6944]; normal_per_base_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2535.5 35.5 2535.5 54.5 2694.5 54.5 2694.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2615 42.5 0 143 26 -normal_per_base_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_per_base_hs_metrics, pos="2615,45", rects="2535.5,35.5,2694.5,54.5", width=2.2083]; pindel_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1439.5 35.5 1439.5 54.5 1546.5 54.5 1546.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1493 42.5 0 91 19 -pindel_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=pindel_filtered_vcf, pos="1493,45", rects="1439.5,35.5,1546.5,54.5", width=1.4861]; normal_snv_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1550.5 35.5 1550.5 54.5 1725.5 54.5 1725.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1638 42.5 0 159 28 -normal_snv_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=normal_snv_bam_readcount_tsv, pos="1638,45", rects="1550.5,35.5,1725.5,54.5", width=2.4306]; tumor_per_target_coverage_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4524 35.5 4524 54.5 4718 54.5 4718 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4621 42.5 0 178 33 -tumor_per_target_coverage_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_per_target_coverage_metrics, pos="4621,45", rects="4524,35.5,4718,54.5", width=2.6944]; tumor_antitarget_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7549.5 35.5 7549.5 54.5 7698.5 54.5 7698.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7624 42.5 0 133 25 -tumor_antitarget_coverage ", fillcolor="#94DDF4", height=0.27778, label=tumor_antitarget_coverage, pos="7624,45", rects="7549.5,35.5,7698.5,54.5", width=2.0694]; normal_alignment_summary_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2699 35.5 2699 54.5 2899 54.5 2899 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2799 42.5 0 184 32 -normal_alignment_summary_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_alignment_summary_metrics, pos="2799,45", rects="2699,35.5,2899,54.5", width=2.7778]; } subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 74 170 74 225 5300 225 5300 170 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 124 213 0 84 15 -Workflow Inputs ", bb="74,170,5300,225", label="Workflow Inputs", lheight=0.15, lp="124,215.5", lwidth=1.17, rank=same, style=dashed ]; vep_to_table_fields [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2665.5 178.5 2665.5 197.5 2776.5 197.5 2776.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2721 185.5 0 95 19 -vep_to_table_fields ", fillcolor="#94DDF4", height=0.27778, label=vep_to_table_fields, pos="2721,188", rects="2665.5,178.5,2776.5,197.5", width=1.5417]; varscan_min_var_freq [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2780.5 178.5 2780.5 197.5 2905.5 197.5 2905.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2843 185.5 0 109 20 -varscan_min_var_freq ", fillcolor="#94DDF4", height=0.27778, label=varscan_min_var_freq, pos="2843,188", rects="2780.5,178.5,2905.5,197.5", width=1.7361]; vep_pick [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2910 178.5 2910 197.5 2970 197.5 2970 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2940 185.5 0 44 8 -vep_pick ", fillcolor="#94DDF4", height=0.27778, label=vep_pick, pos="2940,188", rects="2910,178.5,2970,197.5", width=0.83333]; per_base_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3993.5 178.5 3993.5 197.5 4102.5 197.5 4102.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4048 185.5 0 93 18 -per_base_intervals ", fillcolor="#94DDF4", height=0.27778, label=per_base_intervals, pos="4048,188", rects="3993.5,178.5,4102.5,197.5", width=1.5139]; bqsr_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3589 178.5 3589 197.5 3675 197.5 3675 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3632 185.5 0 70 14 -bqsr_intervals ", fillcolor="#94DDF4", height=0.27778, label=bqsr_intervals, pos="3632,188", rects="3589,178.5,3675,197.5", width=1.1944]; mutect_max_alt_alleles_in_normal_count [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2974 178.5 2974 197.5 3194 197.5 3194 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3084 185.5 0 204 38 -mutect_max_alt_alleles_in_normal_count ", fillcolor="#94DDF4", height=0.27778, label=mutect_max_alt_alleles_in_normal_count, pos="3084,188", rects="2974,178.5,3194,197.5", width=3.0556]; mutect_artifact_detection_mode [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 82 178.5 82 197.5 258 197.5 258 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 170 185.5 0 160 30 -mutect_artifact_detection_mode ", fillcolor="#94DDF4", height=0.27778, label=mutect_artifact_detection_mode, pos="170,188", rects="82,178.5,258,197.5", width=2.4444]; normal_readgroups [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3285.5 178.5 3285.5 197.5 3396.5 197.5 3396.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3341 185.5 0 95 17 -normal_readgroups ", fillcolor="#94DDF4", height=0.27778, label=normal_readgroups, pos="3341,188", rects="3285.5,178.5,3396.5,197.5", width=1.5417]; qc_minimum_base_quality [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4449 178.5 4449 197.5 4597 197.5 4597 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4523 185.5 0 132 23 -qc_minimum_base_quality ", fillcolor="#94DDF4", height=0.27778, label=qc_minimum_base_quality, pos="4523,188", rects="4449,178.5,4597,197.5", width=2.0556]; docm_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 262 178.5 262 197.5 326 197.5 326 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 294 185.5 0 48 8 -docm_vcf ", fillcolor="#94DDF4", height=0.27778, label=docm_vcf, pos="294,188", rects="262,178.5,326,197.5", width=0.88889]; synonyms_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 330.5 178.5 330.5 197.5 417.5 197.5 417.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 374 185.5 0 71 13 -synonyms_file ", fillcolor="#94DDF4", height=0.27778, label=synonyms_file, pos="374,188", rects="330.5,178.5,417.5,197.5", width=1.2083]; panel_of_normals_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 422 178.5 422 197.5 546 197.5 546 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 484 185.5 0 108 20 -panel_of_normals_vcf ", fillcolor="#94DDF4", height=0.27778, label=panel_of_normals_vcf, pos="484,188", rects="422,178.5,546,197.5", width=1.7222]; target_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3679 178.5 3679 197.5 3773 197.5 3773 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3726 185.5 0 78 16 -target_intervals ", fillcolor="#94DDF4", height=0.27778, label=target_intervals, pos="3726,188", rects="3679,178.5,3773,197.5", width=1.3056]; mills [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3777.5 178.5 3777.5 197.5 3818.5 197.5 3818.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3798 185.5 0 25 5 -mills ", fillcolor="#94DDF4", height=0.27778, label=mills, pos="3798,188", rects="3777.5,178.5,3818.5,197.5", width=0.56944]; normal_bams [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3198.5 178.5 3198.5 197.5 3281.5 197.5 3281.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3240 185.5 0 67 11 -normal_bams ", fillcolor="#94DDF4", height=0.27778, label=normal_bams, pos="3240,188", rects="3198.5,178.5,3281.5,197.5", width=1.1528]; vep_cache_dir [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 550 178.5 550 197.5 636 197.5 636 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 593 185.5 0 70 13 -vep_cache_dir ", fillcolor="#94DDF4", height=0.27778, label=vep_cache_dir, pos="593,188", rects="550,178.5,636,197.5", width=1.1944]; picard_metric_accumulation_level [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4173 178.5 4173 197.5 4357 197.5 4357 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4265 185.5 0 168 32 -picard_metric_accumulation_level ", fillcolor="#94DDF4", height=0.27778, label=picard_metric_accumulation_level, pos="4265,188", rects="4173,178.5,4357,197.5", width=2.5556]; summary_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4601.5 178.5 4601.5 197.5 4712.5 197.5 4712.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4657 185.5 0 95 17 -summary_intervals ", fillcolor="#94DDF4", height=0.27778, label=summary_intervals, pos="4657,188", rects="4601.5,178.5,4712.5,197.5", width=1.5417]; qc_minimum_mapping_quality [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3822.5 178.5 3822.5 197.5 3989.5 197.5 3989.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3906 185.5 0 151 26 -qc_minimum_mapping_quality ", fillcolor="#94DDF4", height=0.27778, label=qc_minimum_mapping_quality, pos="3906,188", rects="3822.5,178.5,3989.5,197.5", width=2.3194]; custom_clinvar_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 640.5 178.5 640.5 197.5 751.5 197.5 751.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 696 185.5 0 95 18 -custom_clinvar_vcf ", fillcolor="#94DDF4", height=0.27778, label=custom_clinvar_vcf, pos="696,188", rects="640.5,178.5,751.5,197.5", width=1.5417]; tumor_readgroups [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4903 178.5 4903 197.5 5009 197.5 5009 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4956 185.5 0 90 16 -tumor_readgroups ", fillcolor="#94DDF4", height=0.27778, label=tumor_readgroups, pos="4956,188", rects="4903,178.5,5009,197.5", width=1.4722]; variants_to_table_genotype_fields [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 756 178.5 756 197.5 940 197.5 940 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 848 185.5 0 168 33 -variants_to_table_genotype_fields ", fillcolor="#94DDF4", height=0.27778, label=variants_to_table_genotype_fields, pos="848,188", rects="756,178.5,940,197.5", width=2.5556]; reference [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4835.5 178.5 4835.5 197.5 4898.5 197.5 4898.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4867 185.5 0 47 9 -reference ", fillcolor="#94DDF4", height=0.27778, label=reference, pos="4867,188", rects="4835.5,178.5,4898.5,197.5", width=0.875]; varscan_strand_filter [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 944.5 178.5 944.5 197.5 1063.5 197.5 1063.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1004 185.5 0 103 21 -varscan_strand_filter ", fillcolor="#94DDF4", height=0.27778, label=varscan_strand_filter, pos="1004,188", rects="944.5,178.5,1063.5,197.5", width=1.6528]; normal_cram_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3471 178.5 3471 197.5 3585 197.5 3585 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3528 185.5 0 98 16 -normal_cram_name ", fillcolor="#94DDF4", height=0.27778, label=normal_cram_name, pos="3528,188", rects="3471,178.5,3585,197.5", width=1.5833]; bait_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5013.5 178.5 5013.5 197.5 5096.5 197.5 5096.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5055 185.5 0 67 14 -bait_intervals ", fillcolor="#94DDF4", height=0.27778, label=bait_intervals, pos="5055,188", rects="5013.5,178.5,5096.5,197.5", width=1.1528]; interval_list [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1068 178.5 1068 197.5 1142 197.5 1142 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1105 185.5 0 58 13 -interval_list ", fillcolor="#94DDF4", height=0.27778, label=interval_list, pos="1105,188", rects="1068,178.5,1142,197.5", width=1.0278]; mutect_max_alt_allele_in_normal_fraction [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1146.5 178.5 1146.5 197.5 1371.5 197.5 1371.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1259 185.5 0 209 40 -mutect_max_alt_allele_in_normal_fraction ", fillcolor="#94DDF4", height=0.27778, label=mutect_max_alt_allele_in_normal_fraction, pos="1259,188", rects="1146.5,178.5,1371.5,197.5", width=3.125]; varscan_max_normal_freq [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1376 178.5 1376 197.5 1522 197.5 1522 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1449 185.5 0 130 23 -varscan_max_normal_freq ", fillcolor="#94DDF4", height=0.27778, label=varscan_max_normal_freq, pos="1449,188", rects="1376,178.5,1522,197.5", width=2.0278]; omni_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4107 178.5 4107 197.5 4169 197.5 4169 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4138 185.5 0 46 8 -omni_vcf ", fillcolor="#94DDF4", height=0.27778, label=omni_vcf, pos="4138,188", rects="4107,178.5,4169,197.5", width=0.86111]; pindel_insert_size [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1526 178.5 1526 197.5 1630 197.5 1630 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1578 185.5 0 88 18 -pindel_insert_size ", fillcolor="#94DDF4", height=0.27778, label=pindel_insert_size, pos="1578,188", rects="1526,178.5,1630,197.5", width=1.4444]; varscan_p_value [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1634 178.5 1634 197.5 1732 197.5 1732 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1683 185.5 0 82 15 -varscan_p_value ", fillcolor="#94DDF4", height=0.27778, label=varscan_p_value, pos="1683,188", rects="1634,178.5,1732,197.5", width=1.3611]; custom_gnomad_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1736 178.5 1736 197.5 1854 197.5 1854 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1795 185.5 0 102 17 -custom_gnomad_vcf ", fillcolor="#94DDF4", height=0.27778, label=custom_gnomad_vcf, pos="1795,188", rects="1736,178.5,1854,197.5", width=1.6389]; known_indels [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4361.5 178.5 4361.5 197.5 4444.5 197.5 4444.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4403 185.5 0 67 12 -known_indels ", fillcolor="#94DDF4", height=0.27778, label=known_indels, pos="4403,188", rects="4361.5,178.5,4444.5,197.5", width=1.1528]; dbsnp_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3401 178.5 3401 197.5 3467 197.5 3467 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3434 185.5 0 50 9 -dbsnp_vcf ", fillcolor="#94DDF4", height=0.27778, label=dbsnp_vcf, pos="3434,188", rects="3401,178.5,3467,197.5", width=0.91667]; variants_to_table_fields [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1858.5 178.5 1858.5 197.5 1991.5 197.5 1991.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1925 185.5 0 117 24 -variants_to_table_fields ", fillcolor="#94DDF4", height=0.27778, label=variants_to_table_fields, pos="1925,188", rects="1858.5,178.5,1991.5,197.5", width=1.8472]; cosmic_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1995.5 178.5 1995.5 197.5 2066.5 197.5 2066.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2031 185.5 0 55 10 -cosmic_vcf ", fillcolor="#94DDF4", height=0.27778, label=cosmic_vcf, pos="2031,188", rects="1995.5,178.5,2066.5,197.5", width=0.98611]; mutect_scatter_count [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2071 178.5 2071 197.5 2193 197.5 2193 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2132 185.5 0 106 20 -mutect_scatter_count ", fillcolor="#94DDF4", height=0.27778, label=mutect_scatter_count, pos="2132,188", rects="2071,178.5,2193,197.5", width=1.6944]; per_target_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4716.5 178.5 4716.5 197.5 4831.5 197.5 4831.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4774 185.5 0 99 20 -per_target_intervals ", fillcolor="#94DDF4", height=0.27778, label=per_target_intervals, pos="4774,188", rects="4716.5,178.5,4831.5,197.5", width=1.5972]; tumor_cram_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5100.5 178.5 5100.5 197.5 5209.5 197.5 5209.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5155 185.5 0 93 15 -tumor_cram_name ", fillcolor="#94DDF4", height=0.27778, label=tumor_cram_name, pos="5155,188", rects="5100.5,178.5,5209.5,197.5", width=1.5139]; annotate_coding_only [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2197 178.5 2197 197.5 2321 197.5 2321 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2259 185.5 0 108 20 -annotate_coding_only ", fillcolor="#94DDF4", height=0.27778, label=annotate_coding_only, pos="2259,188", rects="2197,178.5,2321,197.5", width=1.7222]; strelka_cpu_reserved [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2325 178.5 2325 197.5 2445 197.5 2445 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2385 185.5 0 104 20 -strelka_cpu_reserved ", fillcolor="#94DDF4", height=0.27778, label=strelka_cpu_reserved, pos="2385,188", rects="2325,178.5,2445,197.5", width=1.6667]; varscan_min_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2449.5 178.5 2449.5 197.5 2578.5 197.5 2578.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2514 185.5 0 113 20 -varscan_min_coverage ", fillcolor="#94DDF4", height=0.27778, label=varscan_min_coverage, pos="2514,188", rects="2449.5,178.5,2578.5,197.5", width=1.7917]; tumor_bams [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5214 178.5 5214 197.5 5292 197.5 5292 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5253 185.5 0 62 10 -tumor_bams ", fillcolor="#94DDF4", height=0.27778, label=tumor_bams, pos="5253,188", rects="5214,178.5,5292,197.5", width=1.0833]; cle_vcf_filter [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2582.5 178.5 2582.5 197.5 2661.5 197.5 2661.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2622 185.5 0 63 14 -cle_vcf_filter ", fillcolor="#94DDF4", height=0.27778, label=cle_vcf_filter, pos="2622,188", rects="2582.5,178.5,2661.5,197.5", width=1.0972]; } detect_variants [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1533.5 80.5 1533.5 99.5 1672.5 99.5 1672.5 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1603 87.5 0 123 24 -Detect Variants workflow ", fillcolor="#F3CEA1", height=0.27778, label="Detect Variants workflow", pos="1603,90", rects="1533.5,80.5,1672.5,99.5", width=1.9306]; vep_to_table_fields -> detect_variants [_draw_="c 7 -#000000 B 7 2728.78 178.9 2742.98 163.15 2769.89 128.19 2750 108 2731.22 88.94 1935.45 89.9 1680.63 90.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.66 88.25 1673.67 90.72 1680.68 93.15 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2796.5 133.1 0 79 19 -vep_to_table_fields ", label=vep_to_table_fields, lp="2796.5,135", pos="e,1672.2,90.728 2728.8,178.9 2743,163.15 2769.9,128.19 2750,108 2731.2,88.943 1935.5,89.903 1680.6,90.701"]; varscan_min_var_freq -> detect_variants [_draw_="c 7 -#000000 B 10 2844.83 178.55 2847.15 165.33 2849.39 139.76 2836 125 2811.57 98.08 2792.12 112.06 2756 108 2650.08 96.08 1922.39 \ 92.23 1680.78 91.27 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.92 88.82 1673.91 91.24 1680.9 93.72 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2889 133.1 0 88 20 -varscan_min_var_freq ", label=varscan_min_var_freq, lp="2889,135", pos="e,1672.4,91.236 2844.8,178.55 2847.2,165.33 2849.4,139.76 2836,125 2811.6,98.082 2792.1,112.06 2756,108 2650.1,96.08 1922.4,92.227 \ 1680.8,91.269"]; vep_pick -> detect_variants [_draw_="c 7 -#000000 B 10 2941.74 178.82 2944.05 165.52 2946.31 139.24 2932 125 2888.51 81.72 2856.21 112.22 2795 108 2577.28 92.98 1909.32 \ 91.17 1680.7 91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.94 88.55 1673.94 90.99 1680.94 93.45 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2959 133.1 0 36 8 -vep_pick ", label=vep_pick, lp="2959,135", pos="e,1672.4,90.993 2941.7,178.82 2944,165.52 2946.3,139.24 2932,125 2888.5,81.721 2856.2,112.22 2795,108 2577.3,92.984 1909.3,91.171 \ 1680.7,90.999"]; normal_alignment_and_qc [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 3510 125.5 3510 144.5 3650 144.5 3650 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3580 132.5 0 124 23 -exome alignment with qc ", fillcolor="#F3CEA1", height=0.27778, label="exome alignment with qc", pos="3580,135", rects="3510,125.5,3650,144.5", width=1.9444]; per_base_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 4023.74 178.54 4013.46 175.31 4001.27 171.94 3990 170 3958.63 164.6 3876.9 172.9 3847 162 3840.74 159.72 3841.25 \ 155.32 3835 153 3803.7 141.39 3721.07 137.56 3658.29 136.37 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3658.51 133.92 3651.47 136.25 3658.43 138.82 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3885.5 155.6 0 77 18 -per_base_intervals ", label=per_base_intervals, lp="3885.5,157.5", pos="e,3650,136.22 4023.7,178.54 4013.5,175.31 4001.3,171.94 3990,170 3958.6,164.6 3876.9,172.9 3847,162 3840.7,159.72 3841.3,155.32 \ 3835,153 3803.7,141.39 3721.1,137.56 3658.3,136.37"]; tumor_alignment_and_qc [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 4915 125.5 4915 144.5 5055 144.5 5055 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4985 132.5 0 124 23 -exome alignment with qc ", fillcolor="#F3CEA1", height=0.27778, label="exome alignment with qc", pos="4985,135", rects="4915,125.5,5055,144.5", width=1.9444]; per_base_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 4022.23 178.52 4012.25 175.48 4000.68 172.25 3990 170 3976.62 167.18 3938.02 172.28 3929 162 3926.36 158.99 3926.19 \ 155.85 3929 153 3946.12 135.6 4665.62 135.39 4906.99 135.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4906.86 138.25 4913.86 135.82 4906.86 133.35 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3967.5 155.6 0 77 18 -per_base_intervals ", label=per_base_intervals, lp="3967.5,157.5", pos="e,4915.4,135.82 4022.2,178.52 4012.3,175.48 4000.7,172.25 3990,170 3976.6,167.18 3938,172.28 3929,162 3926.4,158.99 3926.2,155.85 \ 3929,153 3946.1,135.6 4665.6,135.39 4907,135.81"]; bqsr_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 3613.18 178.62 3604.74 175.28 3594.55 171.8 3585 170 3568.07 166.81 3287.02 174.34 3275 162 3272.21 159.14 3272.25 \ 155.91 3275 153 3282.72 144.84 3413.97 140.03 3501.76 137.71 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3501.67 140.17 3508.6 137.54 3501.54 135.27 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3304 155.6 0 58 14 -bqsr_intervals ", label=bqsr_intervals, lp="3304,157.5", pos="e,3510.1,137.5 3613.2,178.62 3604.7,175.28 3594.5,171.8 3585,170 3568.1,166.81 3287,174.34 3275,162 3272.2,159.14 3272.3,155.91 \ 3275,153 3282.7,144.84 3414,140.03 3501.8,137.71"]; bqsr_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 3613.17 178.66 3604.73 175.32 3594.54 171.84 3585 170 3572.01 167.5 3356.2 171.51 3347 162 3344.22 159.12 3344.19 \ 155.84 3347 153 3353.94 145.99 4581.67 138.35 4906.77 136.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4906.71 138.9 4913.69 136.41 4906.68 134 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3376 155.6 0 58 14 -bqsr_intervals ", label=bqsr_intervals, lp="3376,157.5", pos="e,4915.2,136.4 3613.2,178.66 3604.7,175.32 3594.5,171.84 3585,170 3572,167.5 3356.2,171.51 3347,162 3344.2,159.12 3344.2,155.84 \ 3347,153 3353.9,145.99 4581.7,138.35 4906.8,136.45"]; mutect_max_alt_alleles_in_normal_count -> detect_variants [_draw_="c 7 -#000000 B 13 3066.53 178.64 3057.07 173.97 3045.25 167.92 3035 162 3008.85 146.89 3006.26 135.66 2978 125 2929.25 106.61 2913.94 \ 112.14 2862 108 2744.85 98.67 1936.16 93.02 1680.38 91.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.77 89 1673.76 91.41 1680.74 93.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3093 133.1 0 166 38 -mutect_max_alt_alleles_in_normal_count ", label=mutect_max_alt_alleles_in_normal_count, lp="3093,135", pos="e,1672.2,91.4 3066.5,178.64 3057.1,173.97 3045.3,167.92 3035,162 3008.8,146.89 3006.3,135.66 2978,125 2929.2,106.61 2913.9,112.14 \ 2862,108 2744.9,98.666 1936.2,93.018 1680.4,91.449"]; mutect_artifact_detection_mode -> detect_variants [_draw_="c 7 -#000000 B 10 173.97 178.78 181.18 164.92 197.81 137.2 221 125 298.78 84.09 330.23 112.41 418 108 634.56 97.12 1297.78 92.63 \ 1525.38 91.39 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1525.12 93.84 1532.1 91.35 1525.09 88.94 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 287 133.1 0 132 30 -mutect_artifact_detection_mode ", label=mutect_artifact_detection_mode, lp="287,135", pos="e,1533.6,91.341 173.97,178.78 181.18,164.92 197.81,137.2 221,125 298.78,84.087 330.23,112.41 418,108 634.56,97.117 1297.8,92.631 \ 1525.4,91.385"]; normal_readgroups -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 3316.62 178.53 3306.1 175.25 3293.58 171.85 3282 170 3270.14 168.1 3074.33 170.65 3066 162 3063.22 159.12 3063.22 \ 155.87 3066 153 3073.46 145.29 3359.73 139.57 3501.74 137.2 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3501.58 139.65 3508.54 137.09 3501.5 134.76 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3090 155.6 0 48 10 -readgroups ", label=readgroups, lp="3090,157.5", pos="e,3510,137.06 3316.6,178.53 3306.1,175.25 3293.6,171.85 3282,170 3270.1,168.1 3074.3,170.65 3066,162 3063.2,159.12 3063.2,155.87 \ 3066,153 3073.5,145.29 3359.7,139.57 3501.7,137.2"]; qc_minimum_base_quality -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 4525.87 178.79 4528 171.05 4529.54 159.65 4523 153 4507.93 137.65 3882 136.05 3658.39 135.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3658.48 133.51 3651.48 135.96 3658.48 138.41 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4574 155.6 0 94 20 -minimum_base_quality ", label=minimum_base_quality, lp="4574,157.5", pos="e,3650,135.96 4525.9,178.79 4528,171.05 4529.5,159.65 4523,153 4507.9,137.65 3882,136.05 3658.4,135.96"]; qc_minimum_base_quality -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 4561.18 178.52 4587.95 172.44 4619.99 164.84 4626 162 4632.03 159.16 4631.73 155.26 4638 153 4662.51 144.16 4812.01 \ 139.51 4906.61 137.42 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4906.56 139.87 4913.51 137.27 4906.46 134.97 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4685 155.6 0 94 20 -minimum_base_quality ", label=minimum_base_quality, lp="4685,157.5", pos="e,4915,137.24 4561.2,178.52 4587.9,172.44 4620,164.84 4626,162 4632,159.16 4631.7,155.26 4638,153 4662.5,144.16 4812,139.51 4906.6,\ 137.42"]; docm_vcf -> detect_variants [_draw_="c 7 -#000000 B 10 304.48 178.62 322.06 165.01 359.12 138.32 395 125 439.32 108.54 452.91 112.15 500 108 699.32 90.42 1308.13 90.21 \ 1525.15 90.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1525.11 93.18 1532.12 90.75 1525.12 88.28 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 414.5 133.1 0 39 8 -docm_vcf ", label=docm_vcf, lp="414.5,135", pos="e,1533.6,90.752 304.48,178.62 322.06,165.01 359.12,138.32 395,125 439.32,108.54 452.91,112.15 500,108 699.32,90.422 1308.1,90.214 \ 1525.1,90.73"]; synonyms_file -> detect_variants [_draw_="c 7 -#000000 B 10 384.56 178.53 402.3 164.8 439.69 137.94 476 125 527.57 106.62 543.42 112.25 598 108 777.75 94.01 1322.1 91.53 \ 1525.36 91.09 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1525.1 93.54 1532.1 91.08 1525.09 88.64 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 505 133.1 0 58 13 -synonyms_file ", label=synonyms_file, lp="505,135", pos="e,1533.6,91.075 384.56,178.53 402.3,164.8 439.69,137.94 476,125 527.57,106.62 543.42,112.25 598,108 777.75,94.008 1322.1,91.528 \ 1525.4,91.092"]; panel_of_normals_vcf -> detect_variants [_draw_="c 7 -#000000 B 10 492.59 178.81 507.68 164.99 540.53 137.34 574 125 642.75 99.65 664.86 112.5 738 108 1028.04 90.15 1373.73 89.57 \ 1525.3 90.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1525.16 92.8 1532.17 90.39 1525.18 87.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 618 133.1 0 88 20 -panel_of_normals_vcf ", label=panel_of_normals_vcf, lp="618,135", pos="e,1533.7,90.398 492.59,178.81 507.68,164.99 540.53,137.34 574,125 642.75,99.648 664.86,112.5 738,108 1028,90.148 1373.7,89.57 1525.3,\ 90.352"]; target_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 3705.51 178.65 3696.34 175.31 3685.29 171.83 3675 170 3660.44 167.41 3419.3 172.61 3409 162 3393.94 146.48 3449.97 \ 140.19 3501.85 137.66 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3501.74 140.12 3508.62 137.36 3501.51 135.23 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3441 155.6 0 64 16 -target_intervals ", label=target_intervals, lp="3441,157.5", pos="e,3510.1,137.29 3705.5,178.65 3696.3,175.31 3685.3,171.83 3675,170 3660.4,167.41 3419.3,172.61 3409,162 3393.9,146.48 3450,140.19 \ 3501.8,137.66"]; target_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 3705.01 178.53 3695.93 175.26 3685.1 171.86 3675 170 3633.75 162.4 3457.51 182.83 3487 153 3499.6 140.26 4601.2 \ 136.86 4907.03 136.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4906.9 138.61 4913.9 136.14 4906.89 133.71 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3519 155.6 0 64 16 -target_intervals ", label=target_intervals, lp="3519,157.5", pos="e,4915.4,136.14 3705,178.53 3695.9,175.26 3685.1,171.86 3675,170 3633.7,162.4 3457.5,182.83 3487,153 3499.6,140.26 4601.2,136.86 \ 4907,136.16"]; mills -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 3788.9 178.66 3784.69 175.32 3779.42 171.83 3774 170 3762.47 166.1 3563.45 170.76 3555 162 3551.12 157.97 3552.99 \ 153.59 3557.08 149.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3558.48 151.6 3562.49 145.37 3555.46 147.74 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3564.5 155.6 0 19 5 -mills ", label=mills, lp="3564.5,157.5", pos="e,3563.7,144.44 3788.9,178.66 3784.7,175.32 3779.4,171.83 3774,170 3762.5,166.1 3563.5,170.76 3555,162 3551.1,157.97 3553,153.59 \ 3557.1,149.59"]; mills -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 3788.9 178.67 3784.68 175.33 3779.41 171.85 3774 170 3732.83 155.96 3548.43 183.94 3579 153 3590.75 141.1 4613.33 \ 137.12 4906.97 136.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4906.94 138.67 4913.93 136.19 4906.93 133.77 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3588.5 155.6 0 19 5 -mills ", label=mills, lp="3588.5,157.5", pos="e,4915.4,136.19 3788.9,178.67 3784.7,175.33 3779.4,171.85 3774,170 3732.8,155.96 3548.4,183.94 3579,153 3590.8,141.1 4613.3,137.12 \ 4907,136.22"]; normal_bams -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 3221.56 178.55 3213.56 175.28 3203.99 171.88 3195 170 3160.87 162.86 3014.73 178.04 3039 153 3042.97 148.9 3353.04 \ 141.22 3501.9 137.76 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3501.72 140.22 3508.66 137.61 3501.6 135.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3050.5 155.6 0 23 4 -bams ", label=bams, lp="3050.5,157.5", pos="e,3510.2,137.57 3221.6,178.55 3213.6,175.28 3204,171.88 3195,170 3160.9,162.86 3014.7,178.04 3039,153 3043,148.9 3353,141.22 3501.9,\ 137.76"]; vep_cache_dir -> detect_variants [_draw_="c 7 -#000000 B 10 605.31 178.51 625.93 164.75 669.21 137.84 710 125 768.95 106.45 786.37 112.48 848 108 977.8 98.57 1360.32 93.54 \ 1525.54 91.76 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1525.24 94.21 1532.21 91.69 1525.18 89.31 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 739 133.1 0 58 13 -vep_cache_dir ", label=vep_cache_dir, lp="739,135", pos="e,1533.7,91.672 605.31,178.51 625.93,164.75 669.21,137.84 710,125 768.95,106.45 786.37,112.48 848,108 977.8,98.568 1360.3,93.541 \ 1525.5,91.76"]; picard_metric_accumulation_level -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 4219.16 178.51 4203.29 175.68 4185.39 172.58 4169 170 4143.29 165.95 4135.07 171.9 4111 162 4104.83 159.46 4105.29 \ 155.21 4099 153 4058.65 138.81 3792.91 136.32 3658.12 135.98 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3658.35 133.53 3651.35 135.96 3658.34 138.43 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4180 155.6 0 138 32 -picard_metric_accumulation_level ", label=picard_metric_accumulation_level, lp="4180,157.5", pos="e,3649.8,135.96 4219.2,178.51 4203.3,175.68 4185.4,172.58 4169,170 4143.3,165.95 4135.1,171.9 4111,162 4104.8,159.46 4105.3,155.21 \ 4099,153 4058.6,138.81 3792.9,136.32 3658.1,135.98"]; picard_metric_accumulation_level -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 4259.62 178.57 4255.47 170.88 4251.43 159.73 4258 153 4269.21 141.52 4721.43 137.55 4906.89 136.4 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4906.75 138.86 4913.73 136.36 4906.72 133.96 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4327 155.6 0 138 32 -picard_metric_accumulation_level ", label=picard_metric_accumulation_level, lp="4327,157.5", pos="e,4915.2,136.35 4259.6,178.57 4255.5,170.88 4251.4,159.73 4258,153 4269.2,141.52 4721.4,137.55 4906.9,136.4"]; summary_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 4686.3 178.58 4705.03 172.9 4726.32 165.77 4729 162 4731.32 158.74 4731.81 155.85 4729 153 4710.2 133.92 3913.95 \ 134.89 3658.2 135.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3658.21 133.25 3651.21 135.72 3658.22 138.15 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4768.5 155.6 0 77 17 -summary_intervals ", label=summary_intervals, lp="4768.5,157.5", pos="e,3649.7,135.72 4686.3,178.58 4705,172.9 4726.3,165.77 4729,162 4731.3,158.74 4731.8,155.85 4729,153 4710.2,133.92 3913.9,134.89 \ 3658.2,135.7"]; summary_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 4682.73 178.52 4693.25 175.37 4705.6 172.06 4717 170 4760 162.23 4774.14 177.5 4815 162 4821.23 159.64 4820.8 \ 155.44 4827 153 4841.73 147.2 4875.01 143.18 4907.25 140.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4907.12 142.98 4913.9 139.98 4906.73 138.1 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4865.5 155.6 0 77 17 -summary_intervals ", label=summary_intervals, lp="4865.5,157.5", pos="e,4915.4,139.86 4682.7,178.52 4693.2,175.37 4705.6,172.06 4717,170 4760,162.23 4774.1,177.5 4815,162 4821.2,159.64 4820.8,155.44 \ 4827,153 4841.7,147.2 4875,143.18 4907.2,140.51"]; qc_minimum_mapping_quality -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 3869.37 178.54 3853.91 175.31 3835.66 171.94 3819 170 3796.03 167.33 3632.58 170.32 3611 162 3609.04 161.25 3602.16 \ 155.54 3595.38 149.66 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3597.34 148.12 3590.46 145.35 3594.11 151.8 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3665.5 155.6 0 109 23 -minimum_mapping_quality ", label=minimum_mapping_quality, lp="3665.5,157.5", pos="e,3589.3,144.35 3869.4,178.54 3853.9,175.31 3835.7,171.94 3819,170 3796,167.33 3632.6,170.32 3611,162 3609,161.25 3602.2,155.54 \ 3595.4,149.66"]; qc_minimum_mapping_quality -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 3867.61 178.57 3852.52 175.5 3835 172.24 3819 170 3808.62 168.55 3732.09 169.72 3725 162 3722.29 159.05 3722.19 \ 155.85 3725 153 3735.42 142.44 4633.53 137.57 4906.91 136.33 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4906.71 138.78 4913.69 136.3 4906.68 133.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3779.5 155.6 0 109 23 -minimum_mapping_quality ", label=minimum_mapping_quality, lp="3779.5,157.5", pos="e,4915.2,136.29 3867.6,178.57 3852.5,175.5 3835,172.24 3819,170 3808.6,168.55 3732.1,169.72 3725,162 3722.3,159.05 3722.2,155.85 \ 3725,153 3735.4,142.44 4633.5,137.57 4906.9,136.33"]; custom_clinvar_vcf -> detect_variants [_draw_="c 7 -#000000 B 10 708.53 178.68 729.95 164.92 775.42 137.69 818 125 884.41 105.2 903.86 112.72 973 108 1171.81 94.44 1406.61 91.57 \ 1525.56 91.04 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1525.42 93.49 1532.41 91.01 1525.4 88.59 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 856.5 133.1 0 77 18 -custom_clinvar_vcf ", label=custom_clinvar_vcf, lp="856.5,135", pos="e,1533.9,91.008 708.53,178.68 729.95,164.92 775.42,137.69 818,125 884.41,105.2 903.86,112.72 973,108 1171.8,94.438 1406.6,91.569 \ 1525.6,91.042"]; tumor_readgroups -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 4979.54 178.56 4989.7 175.3 5001.8 171.89 5013 170 5022.82 168.34 5185.12 169.19 5192 162 5211.6 141.51 5129.81 \ 136.36 5063.31 135.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5063.41 133 5056.39 135.37 5063.36 137.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5218 155.6 0 48 10 -readgroups ", label=readgroups, lp="5218,157.5", pos="e,5054.9,135.35 4979.5,178.56 4989.7,175.3 5001.8,171.89 5013,170 5022.8,168.34 5185.1,169.19 5192,162 5211.6,141.51 5129.8,136.36 \ 5063.3,135.45"]; variants_to_table_genotype_fields -> detect_variants [_draw_="c 7 -#000000 B 7 855.99 178.74 870.06 164.8 900.82 136.98 933 125 987.21 104.83 1360.71 95.49 1525.34 92.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1525.04 94.77 1531.99 92.19 1524.94 89.87 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1002.5 133.1 0 139 33 -variants_to_table_genotype_fields ", label=variants_to_table_genotype_fields, lp="1002.5,135", pos="e,1533.5,92.162 855.99,178.74 870.06,164.8 900.82,136.98 933,125 987.21,104.83 1360.7,95.489 1525.3,92.317"]; reference -> detect_variants [_draw_="c 7 -#000000 B 19 4881.57 178.51 4887.94 175.23 4895.62 171.83 4903 170 4940.7 160.63 5104.43 180.52 5077 153 5065.21 141.17 2685.2 \ 153.81 2671 145 2662.55 139.76 2669.13 130.72 2661 125 2609.39 88.66 2582.97 112.37 2520 108 2357.81 96.75 1870.85 92.63 1680.48 \ 91.42 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.72 88.98 1673.7 91.38 1680.69 93.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2691 133.1 0 40 9 -reference ", label=reference, lp="2691,135", pos="e,1672.2,91.372 4881.6,178.51 4887.9,175.23 4895.6,171.83 4903,170 4940.7,160.63 5104.4,180.52 5077,153 5065.2,141.17 2685.2,153.81 \ 2671,145 2662.6,139.76 2669.1,130.72 2661,125 2609.4,88.656 2583,112.37 2520,108 2357.8,96.748 1870.9,92.63 1680.5,91.424"]; cnvkit [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 6520.5 80.5 6520.5 99.5 6861.5 99.5 6861.5 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6691 87.5 0 325 66 -Subworkflow to allow calling cnvkit with cram instead of bam files ", fillcolor="#F3CEA1", height=0.27778, label="Subworkflow to allow calling cnvkit with cram instead of bam files", pos="6691,90", rects="6520.5,80.5,6861.5,99.5", width=4.7361]; reference -> cnvkit [_draw_="c 7 -#000000 B 19 4881.21 178.62 4887.64 175.28 4895.47 171.8 4903 170 4964.19 155.37 5124.68 176.07 5186 162 5195.5 159.82 5196.64 \ 155.72 5206 153 5290.51 128.48 5314.45 133.8 5402 125 5530.9 112.05 5563.54 112.88 5693 108 5979.51 97.2 6312.56 93.26 6512.3 91.82 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6512.04 94.27 6519.02 91.77 6512 89.37 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5422 133.1 0 40 9 -reference ", label=reference, lp="5422,135", pos="e,6520.5,91.762 4881.2,178.62 4887.6,175.28 4895.5,171.8 4903,170 4964.2,155.37 5124.7,176.07 5186,162 5195.5,159.82 5196.6,155.72 \ 5206,153 5290.5,128.48 5314.4,133.8 5402,125 5530.9,112.05 5563.5,112.88 5693,108 5979.5,97.195 6312.6,93.256 6512.3,91.821"]; reference -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 4881.22 178.67 4887.65 175.34 4895.48 171.85 4903 170 4944.38 159.81 5123.96 183.3 5094 153 5081.26 140.12 3966.65 \ 136.81 3658.28 136.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3658.35 133.7 3651.35 136.13 3658.34 138.6 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5117 155.6 0 40 9 -reference ", label=reference, lp="5117,157.5", pos="e,3649.8,136.13 4881.2,178.67 4887.7,175.34 4895.5,171.85 4903,170 4944.4,159.81 5124,183.3 5094,153 5081.3,140.12 3966.6,136.81 \ 3658.3,136.15"]; reference -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 4881.22 178.64 4887.64 175.3 4895.48 171.82 4903 170 4915.97 166.86 5133.73 171.59 5143 162 5145.78 159.12 5145.67 \ 155.98 5143 153 5137.28 146.63 5099.97 142.44 5063.04 139.82 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5063.35 137.38 5056.19 139.35 5063.01 142.27 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5165 155.6 0 40 9 -reference ", label=reference, lp="5165,157.5", pos="e,5054.7,139.25 4881.2,178.64 4887.6,175.3 4895.5,171.82 4903,170 4916,166.86 5133.7,171.59 5143,162 5145.8,159.12 5145.7,155.98 \ 5143,153 5137.3,146.63 5100,142.44 5063,139.82"]; varscan_strand_filter -> detect_variants [_draw_="c 7 -#000000 B 7 1017.79 178.52 1045.08 161.73 1103.6 125.83 1106 125 1181.27 99.1 1405.27 92.87 1525.19 91.41 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1525.15 93.86 1532.13 91.33 1525.1 88.96 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1148.5 133.1 0 85 21 -varscan_strand_filter ", label=varscan_strand_filter, lp="1148.5,135", pos="e,1533.6,91.313 1017.8,178.52 1045.1,161.73 1103.6,125.83 1106,125 1181.3,99.097 1405.3,92.866 1525.2,91.409"]; normal_cram_name -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 3502.77 178.51 3491.9 175.23 3478.95 171.83 3467 170 3453.43 167.92 3229.55 171.86 3220 162 3217.22 159.13 3217.24 \ 155.89 3220 153 3229.58 142.96 3398.84 138.67 3501.82 136.98 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3501.56 139.44 3508.52 136.88 3501.48 134.54 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3243 155.6 0 46 10 -final_name ", label=final_name, lp="3243,157.5", pos="e,3510,136.85 3502.8,178.51 3491.9,175.23 3479,171.83 3467,170 3453.4,167.92 3229.5,171.86 3220,162 3217.2,159.13 3217.2,155.89 \ 3220,153 3229.6,142.96 3398.8,138.67 3501.8,136.98"]; bait_intervals -> cnvkit [_draw_="c 7 -#000000 B 13 5073.4 178.63 5081.66 175.29 5091.64 171.81 5101 170 5162.33 158.13 5321.11 175.98 5382 162 5391.5 159.82 5392.52 \ 155.27 5402 153 5607.32 103.74 6209.05 93.41 6512.17 91.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6512.11 93.83 6519.09 91.34 6512.07 88.93 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5621.5 133.1 0 55 14 -bait_intervals ", label=bait_intervals, lp="5621.5,135", pos="e,6520.6,91.33 5073.4,178.63 5081.7,175.29 5091.6,171.81 5101,170 5162.3,158.13 5321.1,175.98 5382,162 5391.5,159.82 5392.5,155.27 \ 5402,153 5607.3,103.74 6209.1,93.409 6512.2,91.384"]; bait_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 5073.87 178.58 5082.05 175.31 5091.83 171.91 5101 170 5116.47 166.78 5232.14 173.48 5243 162 5245.75 159.09 5245.81 \ 155.84 5243 153 5235.94 145.87 3985.47 138.29 3657.84 136.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3658.33 133.98 3651.32 136.39 3658.3 138.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5272.5 155.6 0 55 14 -bait_intervals ", label=bait_intervals, lp="5272.5,157.5", pos="e,3649.8,136.39 5073.9,178.58 5082,175.31 5091.8,171.91 5101,170 5116.5,166.78 5232.1,173.48 5243,162 5245.7,159.09 5245.8,155.84 \ 5243,153 5235.9,145.87 3985.5,138.29 3657.8,136.43"]; bait_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 5073.41 178.67 5081.67 175.33 5091.64 171.85 5101 170 5113.16 167.6 5315.39 170.92 5324 162 5326.78 159.12 5326.76 \ 155.9 5324 153 5321.77 150.65 5162.28 143.49 5062.89 139.25 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5063.26 136.82 5056.16 138.96 5063.05 141.71 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5353.5 155.6 0 55 14 -bait_intervals ", label=bait_intervals, lp="5353.5,157.5", pos="e,5054.6,138.9 5073.4,178.67 5081.7,175.33 5091.6,171.85 5101,170 5113.2,167.6 5315.4,170.92 5324,162 5326.8,159.12 5326.8,155.9 \ 5324,153 5321.8,150.65 5162.3,143.49 5062.9,139.25"]; interval_list -> detect_variants [_draw_="c 7 -#000000 B 13 1123.14 178.61 1140.85 170.34 1168.48 157.2 1192 145 1208.25 136.57 1210.84 131.38 1228 125 1262.89 112.04 1273.1 \ 112.87 1310 108 1382.73 98.4 1466.33 94.22 1525.57 92.4 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1525.32 94.86 1532.25 92.21 1525.18 89.96 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1251.5 133.1 0 47 13 -interval_list ", label=interval_list, lp="1251.5,135", pos="e,1533.8,92.162 1123.1,178.61 1140.8,170.34 1168.5,157.2 1192,145 1208.2,136.57 1210.8,131.38 1228,125 1262.9,112.04 1273.1,112.87 \ 1310,108 1382.7,98.403 1466.3,94.224 1525.6,92.404"]; mutect_max_alt_allele_in_normal_fraction -> detect_variants [_draw_="c 7 -#000000 B 7 1261.12 178.9 1265.17 165.22 1275.39 137.77 1295 125 1331.75 101.06 1446.64 93.82 1525.22 91.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1525.21 94.18 1532.15 91.55 1525.09 89.28 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1379.5 133.1 0 169 40 -mutect_max_alt_allele_in_normal_fraction ", label=mutect_max_alt_allele_in_normal_fraction, lp="1379.5,135", pos="e,1533.7,91.515 1261.1,178.9 1265.2,165.22 1275.4,137.77 1295,125 1331.8,101.06 1446.6,93.824 1525.2,91.724"]; varscan_max_normal_freq -> detect_variants [_draw_="c 7 -#000000 B 7 1451.09 178.82 1454.92 165.51 1464.33 139.22 1482 125 1495.44 114.18 1512.12 106.8 1528.75 101.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1529.37 104.14 1535.45 99.89 1528.04 99.42 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1535 133.1 0 106 23 -varscan_max_normal_freq ", label=varscan_max_normal_freq, lp="1535,135", pos="e,1536.9,99.484 1451.1,178.82 1454.9,165.51 1464.3,139.22 1482,125 1495.4,114.18 1512.1,106.8 1528.8,101.77"]; omni_vcf -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 4123.48 178.5 4117.35 175.3 4110.02 171.97 4103 170 4066.89 159.87 4053.97 175.53 4019 162 4012.78 159.59 4013.28 \ 155.23 4007 153 3975.16 141.68 3772.37 137.86 3658.08 136.6 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3658.21 134.15 3651.18 136.53 3658.15 139.05 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4037.5 155.6 0 37 8 -omni_vcf ", label=omni_vcf, lp="4037.5,157.5", pos="e,3649.7,136.51 4123.5,178.5 4117.4,175.3 4110,171.97 4103,170 4066.9,159.87 4054,175.53 4019,162 4012.8,159.59 4013.3,155.23 4007,\ 153 3975.2,141.68 3772.4,137.86 3658.1,136.6"]; omni_vcf -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 4123.03 178.65 4116.97 175.56 4109.8 172.25 4103 170 4084.96 164.02 4073.11 176.64 4061 162 4058.45 158.92 4058.2 \ 155.85 4061 153 4075.74 137.99 4686.92 136.16 4907.03 135.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4906.81 138.44 4913.81 135.99 4906.81 133.54 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4079.5 155.6 0 37 8 -omni_vcf ", label=omni_vcf, lp="4079.5,157.5", pos="e,4915.3,135.99 4123,178.65 4117,175.56 4109.8,172.25 4103,170 4085,164.02 4073.1,176.64 4061,162 4058.4,158.92 4058.2,155.85 4061,\ 153 4075.7,137.99 4686.9,136.16 4907,135.99"]; pindel_insert_size -> detect_variants [_draw_="c 7 -#000000 B 4 1580.13 178.82 1584.23 163.09 1593.26 128.4 1598.67 107.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1601.03 108.29 1600.42 100.9 1596.29 107.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1629.5 133.1 0 73 18 -pindel_insert_size ", label=pindel_insert_size, lp="1629.5,135", pos="e,1600.8,99.438 1580.1,178.82 1584.2,163.09 1593.3,128.4 1598.7,107.63"]; varscan_p_value -> detect_variants [_draw_="c 7 -#000000 B 7 1682.92 178.86 1682.39 166.07 1679.66 141.06 1667 125 1659.34 115.29 1648.13 108.02 1637.22 102.75 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1638.53 100.65 1631.14 100.04 1636.53 105.13 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1711 133.1 0 68 15 -varscan_p_value ", label=varscan_p_value, lp="1711,135", pos="e,1629.8,99.418 1682.9,178.86 1682.4,166.07 1679.7,141.06 1667,125 1659.3,115.29 1648.1,108.02 1637.2,102.75"]; custom_gnomad_vcf -> detect_variants [_draw_="c 7 -#000000 B 7 1790.84 178.71 1783.63 165.23 1767.52 138.72 1746 125 1726.45 112.54 1702.77 104.64 1680.35 99.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1681 97.26 1673.64 98.22 1679.99 102.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1810 133.1 0 84 17 -custom_gnomad_vcf ", label=custom_gnomad_vcf, lp="1810,135", pos="e,1672.2,97.914 1790.8,178.71 1783.6,165.23 1767.5,138.72 1746,125 1726.5,112.54 1702.8,104.64 1680.4,99.63"]; known_indels -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 4403.14 178.76 4402.77 170.77 4400.82 158.98 4393 153 4378.54 141.94 3859.48 137.67 3658.43 136.42 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3658.5 133.97 3651.48 136.38 3658.47 138.87 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4427 155.6 0 56 12 -known_indels ", label=known_indels, lp="4427,157.5", pos="e,3650,136.37 4403.1,178.76 4402.8,170.77 4400.8,158.98 4393,153 4378.5,141.94 3859.5,137.67 3658.4,136.42"]; known_indels -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 4424.43 178.54 4434.84 174.12 4447.35 168.31 4458 162 4463.73 158.6 4463.71 155.21 4470 153 4509.99 138.93 4773.05 \ 136.38 4906.96 136 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4906.69 138.45 4913.69 135.98 4906.68 133.55 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4498 155.6 0 56 12 -known_indels ", label=known_indels, lp="4498,157.5", pos="e,4915.2,135.98 4424.4,178.54 4434.8,174.12 4447.4,168.31 4458,162 4463.7,158.6 4463.7,155.21 4470,153 4510,138.93 4773.1,136.38 \ 4907,136"]; dbsnp_vcf -> detect_variants [_draw_="c 7 -#000000 B 22 3419.37 178.62 3412.76 175.28 3404.71 171.8 3397 170 3335.74 155.69 3175.18 176.67 3114 162 3104.91 159.82 3104.1 \ 155.13 3095 153 3069.41 147.02 2644.51 158.57 2622 145 2613.31 139.76 2619.47 130.58 2611 125 2545.74 82.02 2514.01 112.58 2436 \ 108 2158.41 91.71 1827.99 90.3 1680.62 90.61 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.97 88.16 1673.97 90.62 1680.98 93.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2643 133.1 0 42 9 -dbsnp_vcf ", label=dbsnp_vcf, lp="2643,135", pos="e,1672.5,90.626 3419.4,178.62 3412.8,175.28 3404.7,171.8 3397,170 3335.7,155.69 3175.2,176.67 3114,162 3104.9,159.82 3104.1,155.13 \ 3095,153 3069.4,147.02 2644.5,158.57 2622,145 2613.3,139.76 2619.5,130.58 2611,125 2545.7,82.019 2514,112.58 2436,108 2158.4,91.708 \ 1828,90.298 1680.6,90.606"]; dbsnp_vcf -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 3419.37 178.63 3412.76 175.28 3404.71 171.8 3397 170 3381.9 166.47 3128.81 173.12 3118 162 3115.21 159.13 3115.22 \ 155.88 3118 153 3131.08 139.43 3373.79 136.62 3502.04 136.09 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3501.82 138.54 3508.81 136.06 3501.8 133.64 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3139 155.6 0 42 9 -dbsnp_vcf ", label=dbsnp_vcf, lp="3139,157.5", pos="e,3510.3,136.06 3419.4,178.63 3412.8,175.28 3404.7,171.8 3397,170 3381.9,166.47 3128.8,173.12 3118,162 3115.2,159.13 3115.2,155.88 \ 3118,153 3131.1,139.43 3373.8,136.62 3502,136.09"]; dbsnp_vcf -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 3419.36 178.65 3412.75 175.31 3404.7 171.83 3397 170 3384.94 167.13 3182.61 170.92 3174 162 3171.22 159.12 3171.18 \ 155.84 3174 153 3177.87 149.09 4559.22 139.02 4906.5 136.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4906.51 139 4913.49 136.5 4906.47 134.1 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3195 155.6 0 42 9 -dbsnp_vcf ", label=dbsnp_vcf, lp="3195,157.5", pos="e,4915,136.49 3419.4,178.65 3412.7,175.31 3404.7,171.83 3397,170 3384.9,167.13 3182.6,170.92 3174,162 3171.2,159.12 3171.2,155.84 \ 3174,153 3177.9,149.09 4559.2,139.02 4906.5,136.55"]; variants_to_table_fields -> detect_variants [_draw_="c 7 -#000000 B 7 1918.44 178.9 1906.85 165.2 1881.28 137.73 1853 125 1823.04 111.51 1742.35 102.16 1680.67 96.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1681.17 94.31 1673.99 96.14 1680.75 99.19 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1931.5 133.1 0 97 24 -variants_to_table_fields ", label=variants_to_table_fields, lp="1931.5,135", pos="e,1672.5,96.014 1918.4,178.9 1906.9,165.2 1881.3,137.73 1853,125 1823,111.51 1742.3,102.16 1680.7,96.722"]; cosmic_vcf -> detect_variants [_draw_="c 7 -#000000 B 7 2027.13 178.81 2020.12 164.99 2003.88 137.34 1981 125 1930.82 97.95 1775.79 91.93 1680.57 90.87 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.66 88.42 1673.63 90.81 1680.61 93.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2026.5 133.1 0 45 10 -cosmic_vcf ", label=cosmic_vcf, lp="2026.5,135", pos="e,1672.1,90.791 2027.1,178.81 2020.1,164.99 2003.9,137.34 1981,125 1930.8,97.947 1775.8,91.932 1680.6,90.874"]; mutect_scatter_count -> detect_variants [_draw_="c 7 -#000000 B 7 2123.8 178.57 2109.97 164.89 2080.5 138.09 2050 125 1985.61 97.36 1790.66 91.78 1680.67 90.9 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.78 88.45 1673.76 90.86 1680.75 93.35 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2127 133.1 0 88 20 -mutect_scatter_count ", label=mutect_scatter_count, lp="2127,135", pos="e,1672.3,90.845 2123.8,178.57 2110,164.89 2080.5,138.09 2050,125 1985.6,97.361 1790.7,91.782 1680.7,90.904"]; per_target_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 4801.57 178.52 4812.24 175.48 4824.61 172.25 4836 170 4850.28 167.18 4891.36 172.9 4901 162 4903.65 159 4903.81 \ 155.85 4901 153 4890.02 141.88 3940.02 137.37 3658.05 136.28 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3658.43 133.83 3651.42 136.25 3658.41 138.73 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4944 155.6 0 82 20 -per_target_intervals ", label=per_target_intervals, lp="4944,157.5", pos="e,3649.9,136.25 4801.6,178.52 4812.2,175.48 4824.6,172.25 4836,170 4850.3,167.18 4891.4,172.9 4901,162 4903.7,159 4903.8,155.85 \ 4901,153 4890,141.88 3940,137.37 3658,136.28"]; per_target_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 4799.97 178.53 4810.97 175.3 4823.99 171.93 4836 170 4853.14 167.24 4980.05 174.58 4992 162 4994.61 159.26 4994.86 \ 155.65 4994 152 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4996.31 151.18 4991.37 145.65 4991.79 153.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5035 155.6 0 82 20 -per_target_intervals ", label=per_target_intervals, lp="5035,157.5", pos="e,4990.8,144.25 4800,178.53 4811,175.3 4824,171.93 4836,170 4853.1,167.24 4980,174.58 4992,162 4994.6,159.26 4994.9,155.65 4994,\ 152"]; tumor_cram_name -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 13 5179.39 178.59 5189.91 175.32 5202.43 171.92 5214 170 5251.02 163.87 5407.96 180.09 5382 153 5374.77 145.45 5204.44 \ 145.45 5194 145 5150.64 143.14 5102.22 141.06 5062.91 139.36 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5063.28 136.93 5056.18 139.07 5063.07 141.82 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5407 155.6 0 46 10 -final_name ", label=final_name, lp="5407,157.5", pos="e,5054.7,139.01 5179.4,178.59 5189.9,175.32 5202.4,171.92 5214,170 5251,163.87 5408,180.09 5382,153 5374.8,145.45 5204.4,145.45 \ 5194,145 5150.6,143.14 5102.2,141.06 5062.9,139.36"]; annotate_coding_only -> detect_variants [_draw_="c 7 -#000000 B 7 2250.75 178.81 2236.25 164.98 2204.62 137.32 2172 125 2127.3 108.11 1826.14 97.35 1680.96 93.09 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1681.05 90.64 1673.99 92.88 1680.91 95.54 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2254.5 133.1 0 91 20 -annotate_coding_only ", label=annotate_coding_only, lp="2254.5,135", pos="e,1672.5,92.841 2250.8,178.81 2236.2,164.98 2204.6,137.32 2172,125 2127.3,108.11 1826.1,97.352 1681,93.088"]; strelka_cpu_reserved -> detect_variants [_draw_="c 7 -#000000 B 7 2377.13 178.72 2363.27 164.76 2332.93 136.9 2301 125 2244.19 103.83 1850.59 94.99 1680.74 92.13 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.89 89.69 1673.85 92.02 1680.81 94.59 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2380.5 133.1 0 87 20 -strelka_cpu_reserved ", label=strelka_cpu_reserved, lp="2380.5,135", pos="e,1672.3,91.994 2377.1,178.72 2363.3,164.76 2332.9,136.9 2301,125 2244.2,103.83 1850.6,94.993 1680.7,92.134"]; varscan_min_coverage -> detect_variants [_draw_="c 7 -#000000 B 7 2502.34 178.64 2479.21 162.07 2429.34 126.56 2425 125 2356.24 100.32 1872.41 93.37 1680.84 91.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1681.02 89.13 1674 91.51 1680.98 94.03 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2501 133.1 0 94 20 -varscan_min_coverage ", label=varscan_min_coverage, lp="2501,135", pos="e,1672.5,91.5 2502.3,178.64 2479.2,162.07 2429.3,126.56 2425,125 2356.2,100.32 1872.4,93.372 1680.8,91.577"]; tumor_bams -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 5291.62 185.41 5349.81 182.32 5451.17 173.87 5431 153 5421.84 143.53 5207.16 145.51 5194 145 5150.63 143.33 5102.21 \ 141.26 5062.9 139.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5063.27 137.09 5056.17 139.23 5063.06 141.99 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5444.5 155.6 0 23 4 -bams ", label=bams, lp="5444.5,157.5", pos="e,5054.7,139.16 5291.6,185.41 5349.8,182.32 5451.2,173.87 5431,153 5421.8,143.53 5207.2,145.51 5194,145 5150.6,143.33 5102.2,141.26 \ 5062.9,139.53"]; cle_vcf_filter -> detect_variants [_draw_="c 7 -#000000 B 13 2608.07 178.65 2595.56 170.8 2577.07 158.3 2563 145 2554.73 137.18 2557.05 130.34 2547 125 2464.31 81.06 2430.51 \ 112.86 2337 108 2097.92 95.56 1814.57 92.23 1680.59 91.33 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.9 88.88 1673.88 91.29 1680.87 93.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2588.5 133.1 0 51 14 -cle_vcf_filter ", label=cle_vcf_filter, lp="2588.5,135", pos="e,1672.4,91.276 2608.1,178.65 2595.6,170.8 2577.1,158.3 2563,145 2554.7,137.18 2557.1,130.34 2547,125 2464.3,81.062 2430.5,112.86 \ 2337,108 2097.9,95.565 1814.6,92.226 1680.6,91.329"]; detect_variants -> final_filtered_vcf [_draw_="c 7 -#000000 B 7 1648.53 80.53 1671.84 75.9 1700.58 69.74 1726 63 1732.71 61.22 1739.83 59.1 1746.61 56.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1746.99 59.42 1752.91 54.95 1745.49 54.75 ", pos="e,1754.3,54.484 1648.5,80.528 1671.8,75.901 1700.6,69.745 1726,63 1732.7,61.219 1739.8,59.098 1746.6,56.968"]; detect_variants -> final_tsv [_draw_="c 7 -#000000 B 7 1672.49 87.41 1717.64 84.81 1777.31 78.42 1828 63 1831.95 61.8 1836 60.13 1839.84 58.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1840.89 60.52 1846 55.14 1838.65 56.16 ", pos="e,1847.3,54.444 1672.5,87.408 1717.6,84.814 1777.3,78.424 1828,63 1832,61.797 1836,60.13 1839.8,58.307"]; detect_variants -> mutect_unfiltered_vcf [_draw_="c 7 -#000000 B 7 1672.4 86.11 1731.02 82.86 1816.99 76.21 1891 63 1900.41 61.32 1910.46 58.97 1919.78 56.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1920.15 58.99 1926.28 54.82 1918.88 54.26 ", pos="e,1927.7,54.432 1672.4,86.109 1731,82.864 1817,76.212 1891,63 1900.4,61.319 1910.5,58.972 1919.8,56.556"]; detect_variants -> docm_filtered_vcf [_draw_="c 7 -#000000 B 7 1672.25 89.55 1755.12 89.08 1897.76 84.71 2018 63 2026.09 61.54 2034.66 59.3 2042.6 56.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2043.2 59.31 2049.15 54.88 2041.74 54.63 ", pos="e,2050.6,54.432 1672.2,89.546 1755.1,89.079 1897.8,84.712 2018,63 2026.1,61.539 2034.7,59.304 2042.6,56.93"]; detect_variants -> varscan_filtered_vcf [_draw_="c 7 -#000000 B 7 1672.02 87.53 1793.69 84.62 2041.52 77.13 2127 63 2135.96 61.52 2145.49 59.22 2154.29 56.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2154.95 59.15 2161 54.86 2153.59 54.44 ", pos="e,2162.5,54.446 1672,87.532 1793.7,84.618 2041.5,77.13 2127,63 2136,61.519 2145.5,59.224 2154.3,56.794"]; detect_variants -> tumor_snv_bam_readcount_tsv [_draw_="c 7 -#000000 B 10 1533.73 88.33 1357.81 86.55 879.53 81.18 481 72 351.64 69.02 318.62 77.18 190 63 175.62 61.41 160.09 58.77 146.09 \ 56.04 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 146.87 53.7 139.53 54.73 145.91 58.51 ", pos="e,138.04,54.43 1533.7,88.33 1357.8,86.547 879.53,81.181 481,72 351.64,69.02 318.62,77.183 190,63 175.62,61.415 160.09,58.775 146.09,\ 56.043"]; detect_variants -> tumor_indel_bam_readcount_tsv [_draw_="c 7 -#000000 B 10 1533.53 89.1 1360.43 89.1 895.96 87.52 509 72 447.14 69.52 431.43 70.64 370 63 355.72 61.22 340.3 58.64 326.24 \ 56.02 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 326.97 53.67 319.63 54.76 326.05 58.48 ", pos="e,318.14,54.482 1533.5,89.103 1360.4,89.104 895.96,87.524 509,72 447.14,69.518 431.43,70.638 370,63 355.72,61.224 340.3,58.641 326.24,\ 56.022"]; detect_variants -> vep_summary [_draw_="c 7 -#000000 B 10 1533.52 87.62 1395.21 84.86 1075.6 78.35 807 72 652.77 68.35 611.6 91.61 460 63 453.29 61.73 446.25 59.64 439.74 \ 57.34 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 440.65 55.07 433.24 54.91 438.93 59.66 ", pos="e,431.82,54.375 1533.5,87.623 1395.2,84.858 1075.6,78.352 807,72 652.77,68.353 611.6,91.605 460,63 453.29,61.733 446.25,59.637 439.74,\ 57.342"]; detect_variants -> normal_indel_bam_readcount_tsv [_draw_="c 7 -#000000 B 10 1533.67 87.96 1400.55 85.84 1099.91 80.5 847 72 757.63 68.99 734.87 72.9 646 63 630.83 61.31 614.42 58.67 599.58 \ 55.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 600.33 53.62 593 54.74 599.43 58.43 ", pos="e,591.51,54.468 1533.7,87.957 1400.5,85.84 1099.9,80.505 847,72 757.63,68.995 734.87,72.898 646,63 630.83,61.31 614.42,58.669 599.58,\ 55.969"]; detect_variants -> pindel_unfiltered_vcf [_draw_="c 7 -#000000 B 10 1533.68 89 1403.11 88.65 1111.83 86.17 867 72 823.78 69.5 812.63 70.58 770 63 760.81 61.37 751.02 59.06 741.93 \ 56.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 742.67 54.33 735.27 54.87 741.39 59.06 ", pos="e,733.81,54.471 1533.7,89.001 1403.1,88.648 1111.8,86.168 867,72 823.78,69.499 812.63,70.584 770,63 760.81,61.366 751.02,59.059 \ 741.93,56.671"]; detect_variants -> final_vcf [_draw_="c 7 -#000000 B 10 1533.75 87.3 1426.01 84.57 1211.75 78.83 1030 72 941.97 68.69 917.12 85.69 832 63 827.83 61.89 823.58 60.19 819.57 \ 58.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 820.96 56.25 813.62 55.2 818.7 60.6 ", pos="e,812.27,54.499 1533.7,87.298 1426,84.57 1211.8,78.826 1030,72 941.97,68.694 917.12,85.694 832,63 827.83,61.887 823.58,60.191 819.57,\ 58.295"]; detect_variants -> docm_unfiltered_vcf [_draw_="c 7 -#000000 B 7 1533.56 88.28 1389.47 86.45 1062.25 80.47 952 63 942.8 61.54 933.01 59.23 923.99 56.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 924.82 54.46 917.42 54.91 923.49 59.18 ", pos="e,915.97,54.496 1533.6,88.282 1389.5,86.455 1062.3,80.465 952,63 942.8,61.543 933.01,59.229 923.99,56.772"]; detect_variants -> varscan_unfiltered_vcf [_draw_="c 7 -#000000 B 7 1533.73 89.88 1433.81 90.16 1243.69 87.01 1084 63 1073.75 61.46 1062.8 59.06 1052.74 56.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1053.4 54.19 1046.01 54.81 1052.17 58.93 ", pos="e,1044.5,54.428 1533.7,89.876 1433.8,90.157 1243.7,87.013 1084,63 1073.8,61.459 1062.8,59.062 1052.7,56.55"]; detect_variants -> mutect_filtered_vcf [_draw_="c 7 -#000000 B 7 1533.86 88.98 1452.99 87.95 1315.37 83 1199 63 1190.27 61.5 1180.99 59.22 1172.4 56.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1173.28 54.52 1165.87 54.91 1171.91 59.22 ", pos="e,1164.4,54.49 1533.9,88.984 1453,87.946 1315.4,82.998 1199,63 1190.3,61.499 1181,59.221 1172.4,56.815"]; detect_variants -> strelka_filtered_vcf [_draw_="c 7 -#000000 B 7 1533.64 86.51 1474.57 83.5 1387.65 76.97 1313 63 1304.59 61.43 1295.66 59.17 1287.35 56.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1288.16 54.49 1280.75 54.87 1286.78 59.2 ", pos="e,1279.3,54.441 1533.6,86.507 1474.6,83.497 1387.7,76.969 1313,63 1304.6,61.427 1295.7,59.169 1287.4,56.811"]; detect_variants -> strelka_unfiltered_vcf [_draw_="c 7 -#000000 B 7 1540.04 80.5 1509.42 75.99 1472.15 69.95 1439 63 1430.26 61.17 1420.94 58.91 1412.16 56.65 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1412.81 54.29 1405.41 54.88 1411.56 59.03 ", pos="e,1403.9,54.493 1540,80.503 1509.4,75.993 1472.2,69.946 1439,63 1430.3,61.169 1420.9,58.914 1412.2,56.651"]; detect_variants -> pindel_filtered_vcf [_draw_="c 7 -#000000 B 4 1581.27 80.5 1564.47 73.94 1541.04 64.78 1522.54 57.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1523.51 55.3 1516.1 55.03 1521.72 59.86 ", pos="e,1514.7,54.478 1581.3,80.505 1564.5,73.938 1541,64.779 1522.5,57.547"]; detect_variants -> normal_snv_bam_readcount_tsv [_draw_="c 7 -#000000 B 4 1609.75 80.71 1614.4 75 1620.7 67.26 1626.17 60.54 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1627.8 62.41 1630.32 55.44 1624 59.32 ", pos="e,1631.3,54.265 1609.7,80.709 1614.4,74.998 1620.7,67.258 1626.2,60.535"]; cnvkit -> intervals_antitarget [_draw_="c 7 -#000000 B 7 6576.42 80.52 6536.23 76.52 6490.92 70.85 6450 63 6441.41 61.35 6432.27 59.08 6423.74 56.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6424.66 54.46 6417.26 54.91 6423.32 59.17 ", pos="e,6415.8,54.495 6576.4,80.519 6536.2,76.521 6490.9,70.853 6450,63 6441.4,61.351 6432.3,59.085 6423.7,56.744"]; cnvkit -> reference_coverage [_draw_="c 7 -#000000 B 7 6647.23 80.55 6623.42 75.77 6593.5 69.46 6567 63 6559.15 61.09 6550.78 58.87 6542.84 56.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6543.62 54.36 6536.21 54.84 6542.3 59.08 ", pos="e,6534.8,54.429 6647.2,80.546 6623.4,75.765 6593.5,69.463 6567,63 6559.2,61.086 6550.8,58.87 6542.8,56.683"]; cnvkit -> cn_diagram [_draw_="c 7 -#000000 B 4 6673.81 80.5 6660.94 74.14 6643.15 65.35 6628.75 58.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6629.87 56.05 6622.51 55.15 6627.7 60.45 ", pos="e,6621.2,54.478 6673.8,80.505 6660.9,74.144 6643.2,65.351 6628.8,58.233"]; cnvkit -> cn_scatter_plot [_draw_="c 7 -#000000 B 4 6691 80.71 6691 75.59 6691 68.85 6691 62.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6693.45 62.78 6691 55.78 6688.55 62.78 ", pos="e,6691,54.265 6691,80.709 6691,75.593 6691,68.848 6691,62.666"]; cnvkit -> normal_antitarget_coverage [_draw_="c 7 -#000000 B 4 6716.09 80.5 6735.83 73.82 6763.51 64.45 6785.04 57.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6785.68 59.53 6791.53 54.96 6784.11 54.89 ", pos="e,6793,54.478 6716.1,80.505 6735.8,73.82 6763.5,64.449 6785,57.16"]; cnvkit -> tumor_segmented_ratios [_draw_="c 7 -#000000 B 7 6773.09 80.54 6810.69 76.17 6855.74 70.22 6896 63 6906.41 61.13 6917.57 58.74 6927.95 56.34 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6928.35 58.76 6934.61 54.77 6927.23 53.99 ", pos="e,6936.1,54.423 6773.1,80.54 6810.7,76.166 6855.7,70.22 6896,63 6906.4,61.133 6917.6,58.738 6927.9,56.338"]; cnvkit -> intervals_target [_draw_="c 7 -#000000 B 7 6861.18 84.7 6918.12 81.04 6981.68 74.51 7039 63 7046.1 61.57 7053.59 59.45 7060.57 57.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7061.21 59.55 7067.05 54.97 7059.63 54.91 ", pos="e,7068.5,54.486 6861.2,84.702 6918.1,81.037 6981.7,74.51 7039,63 7046.1,61.574 7053.6,59.449 7060.6,57.181"]; cnvkit -> tumor_target_coverage [_draw_="c 7 -#000000 B 7 6861.33 86.63 6945.07 83.55 7047.24 76.94 7138 63 7148.39 61.4 7159.51 58.99 7169.72 56.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7170.04 58.92 7176.22 54.82 7168.83 54.17 ", pos="e,7177.7,54.447 6861.3,86.631 6945.1,83.554 7047.2,76.943 7138,63 7148.4,61.404 7159.5,58.986 7169.7,56.471"]; cnvkit -> normal_target_coverage [_draw_="c 7 -#000000 B 7 6861.32 84.96 7004.09 80.91 7196.5 73.73 7273 63 7284.05 61.45 7295.89 59 7306.71 56.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7307.07 58.86 7313.29 54.82 7305.91 54.1 ", pos="e,7314.8,54.455 6861.3,84.96 7004.1,80.912 7196.5,73.73 7273,63 7284,61.45 7295.9,58.995 7306.7,56.428"]; cnvkit -> tumor_bin_level_ratios [_draw_="c 7 -#000000 B 7 6861.41 87.02 7040.65 84.19 7310.64 77.61 7413 63 7423.46 61.51 7434.64 59.07 7444.85 56.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7445.18 58.95 7451.34 54.82 7443.95 54.21 ", pos="e,7452.8,54.435 6861.4,87.017 7040.6,84.187 7310.6,77.612 7413,63 7423.5,61.507 7434.6,59.073 7444.9,56.506"]; cnvkit -> tumor_antitarget_coverage [_draw_="c 7 -#000000 B 10 6861.28 85.15 6989.81 82.07 7170.5 77.4 7329 72 7425.47 68.71 7450.26 75.32 7546 63 7558.17 61.43 7571.26 58.92 \ 7583.17 56.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7583.44 58.74 7589.73 54.81 7582.36 53.97 ", pos="e,7591.2,54.471 6861.3,85.148 6989.8,82.074 7170.5,77.398 7329,72 7425.5,68.714 7450.3,75.324 7546,63 7558.2,61.433 7571.3,58.916 \ 7583.2,56.293"]; normal_alignment_and_qc -> normal_verify_bam_id_metrics [_draw_="c 7 -#000000 B 16 3519.97 125.54 3503.42 123.01 3485.48 120.08 3469 117 3434.55 110.57 3424.21 113.82 3392 100 3370.82 90.91 3370.94 \ 78.06 3349 71 3320.01 61.67 3105.27 66.34 3075 63 3060.78 61.43 3045.42 58.79 3031.58 56.06 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3032.45 53.74 3025.1 54.75 3031.48 58.54 ", pos="e,3023.6,54.448 3520,125.54 3503.4,123.01 3485.5,120.08 3469,117 3434.5,110.57 3424.2,113.82 3392,100 3370.8,90.911 3370.9,78.06 \ 3349,71 3320,61.672 3105.3,66.344 3075,63 3060.8,61.429 3045.4,58.793 3031.6,56.061"]; normal_alignment_and_qc -> normal_verify_bam_id_depth [_draw_="c 7 -#000000 B 16 3542.81 125.57 3531.31 122.9 3518.62 119.89 3507 117 3478.44 109.88 3471.08 108.8 3443 100 3406.91 88.69 3400.02 \ 78.72 3363 71 3308.07 59.55 3292.62 70.43 3237 63 3224.2 61.29 3210.42 58.76 3197.84 56.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3198.6 53.82 3191.25 54.77 3197.59 58.61 ", pos="e,3189.8,54.456 3542.8,125.57 3531.3,122.9 3518.6,119.89 3507,117 3478.4,109.88 3471.1,108.8 3443,100 3406.9,88.69 3400,78.721 3363,\ 71 3308.1,59.545 3292.6,70.425 3237,63 3224.2,61.292 3210.4,58.756 3197.8,56.162"]; normal_alignment_and_qc -> normal_hs_metrics [_draw_="c 7 -#000000 B 13 3556.2 125.61 3537.35 118.89 3510.39 109.11 3487 100 3455.62 87.77 3449.57 79.55 3417 71 3388.42 63.5 3379.96 \ 68.89 3351 63 3342.77 61.33 3334.03 59.08 3325.85 56.76 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3326.78 54.48 3319.37 54.86 3325.4 59.18 ", pos="e,3317.9,54.439 3556.2,125.61 3537.3,118.89 3510.4,109.11 3487,100 3455.6,87.771 3449.6,79.55 3417,71 3388.4,63.498 3380,68.887 \ 3351,63 3342.8,61.327 3334,59.075 3325.9,56.758"]; normal_alignment_and_qc -> normal_insert_size_metrics [_draw_="c 7 -#000000 B 4 3565.33 125.56 3538.19 109.95 3480.02 76.5 3448.45 58.34 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3450 56.4 3442.71 55.04 3447.56 60.65 ", pos="e,3441.4,54.284 3565.3,125.56 3538.2,109.95 3480,76.498 3448.5,58.339"]; normal_alignment_and_qc -> normal_per_target_coverage_metrics [_draw_="c 7 -#000000 B 4 3582.49 125.56 3586.79 111 3595.68 80.93 3601.21 62.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3603.49 63.14 3603.12 55.74 3598.79 61.75 ", pos="e,3603.6,54.284 3582.5,125.56 3586.8,111 3595.7,80.933 3601.2,62.216"]; normal_alignment_and_qc -> normal_per_base_coverage_metrics [_draw_="c 7 -#000000 B 4 3601.67 125.56 3642.42 109.69 3730.5 75.4 3776.57 57.46 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3777.35 59.78 3782.99 54.96 3775.57 55.22 ", pos="e,3784.4,54.412 3601.7,125.56 3642.4,109.69 3730.5,75.397 3776.6,57.459"]; normal_alignment_and_qc -> normal_per_target_hs_metrics [_draw_="c 7 -#000000 B 4 3619.22 125.56 3694.7 109.32 3859.92 73.77 3941.5 56.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3941.79 58.66 3948.12 54.8 3940.76 53.87 ", pos="e,3949.6,54.477 3619.2,125.56 3694.7,109.32 3859.9,73.772 3941.5,56.22"]; normal_alignment_and_qc -> normal_summary_hs_metrics [_draw_="c 7 -#000000 B 7 3647.04 125.54 3741.9 113.3 3920.64 89.22 4072 63 4083.91 60.94 4096.72 58.47 4108.66 56.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4108.92 58.51 4115.29 54.72 4107.94 53.71 ", pos="e,4116.8,54.416 3647,125.54 3741.9,113.3 3920.6,89.217 4072,63 4083.9,60.937 4096.7,58.471 4108.7,56.066"]; normal_alignment_and_qc -> normal_cram [_draw_="c 7 -#000000 B 10 3649.9 127.08 3680.35 124.03 3716.44 120.39 3749 117 3966.04 94.41 4025.05 114.91 4237 63 4242.91 61.55 4249.09 \ 59.52 4254.89 57.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4255.47 59.76 4261.09 54.92 4253.68 55.19 ", pos="e,4262.5,54.366 3649.9,127.08 3680.3,124.03 3716.4,120.39 3749,117 3966,94.408 4025.1,114.91 4237,63 4242.9,61.554 4249.1,59.516 \ 4254.9,57.352"]; normal_alignment_and_qc -> normal_mark_duplicates_metrics [_draw_="c 7 -#000000 B 10 3510.01 129.88 3452.32 126.48 3368.35 121.48 3295 117 3199.21 111.14 2528.27 74.56 2433 63 2418.41 61.23 2402.66 \ 58.65 2388.3 56.03 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2388.84 53.64 2381.51 54.77 2387.95 58.46 ", pos="e,2380,54.489 3510,129.88 3452.3,126.48 3368.3,121.48 3295,117 3199.2,111.14 2528.3,74.559 2433,63 2418.4,61.23 2402.7,58.649 2388.3,\ 56.03"]; normal_alignment_and_qc -> normal_flagstats [_draw_="c 7 -#000000 B 16 3510.16 131.73 3462.35 129.51 3397.6 125.22 3341 117 3306.32 111.97 3298.15 107.89 3264 100 3210.54 87.64 3198.44 \ 77.85 3144 71 3076.86 62.55 2601.79 73.9 2535 63 2527.16 61.72 2518.88 59.51 2511.26 57.09 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2512.15 54.81 2504.74 54.91 2510.6 59.46 ", pos="e,2503.3,54.431 3510.2,131.73 3462.4,129.51 3397.6,125.22 3341,117 3306.3,111.97 3298.1,107.89 3264,100 3210.5,87.64 3198.4,77.848 \ 3144,71 3076.9,62.554 2601.8,73.899 2535,63 2527.2,61.72 2518.9,59.508 2511.3,57.094"]; normal_alignment_and_qc -> normal_per_base_hs_metrics [_draw_="c 7 -#000000 B 13 3510.23 131.6 3471.34 129.39 3422.19 125.15 3379 117 3308.39 103.68 3295.03 81.87 3224 71 3108.66 53.35 2815.01 \ 75.51 2699 63 2685.4 61.53 2670.74 58.93 2657.53 56.19 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2658.35 53.86 2650.99 54.79 2657.33 58.65 ", pos="e,2649.5,54.479 3510.2,131.6 3471.3,129.39 3422.2,125.15 3379,117 3308.4,103.68 3295,81.871 3224,71 3108.7,53.348 2815,75.514 2699,\ 63 2685.4,61.533 2670.7,58.928 2657.5,56.191"]; normal_alignment_and_qc -> normal_alignment_summary_metrics [_draw_="c 7 -#000000 B 16 3510.36 130.54 3480.18 128.11 3444.59 123.99 3413 117 3390.49 112.02 3384.31 110.91 3364 100 3345.28 89.95 3346.06 \ 77.99 3326 71 3303.81 63.26 2926.41 65.12 2903 63 2885.7 61.43 2866.92 58.69 2850.15 55.85 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2850.89 53.5 2843.58 54.72 2850.06 58.33 ", pos="e,2842.1,54.462 3510.4,130.54 3480.2,128.11 3444.6,123.99 3413,117 3390.5,112.02 3384.3,110.91 3364,100 3345.3,89.947 3346.1,77.993 \ 3326,71 3303.8,63.264 2926.4,65.124 2903,63 2885.7,61.43 2866.9,58.686 2850.1,55.855"]; normal_alignment_and_qc -> detect_variants [_draw_="c 7 -#000000 B 10 3510.37 133.18 3414.17 131.7 3235.23 127.65 3083 117 3045.1 114.35 3035.92 110.23 2998 108 2738.76 92.73 1935 \ 91.11 1680.87 90.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.93 88.54 1673.93 90.99 1680.93 93.44 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3109.5 110.6 0 53 11 -normal_cram ", label=normal_cram, lp="3109.5,112.5", pos="e,1672.4,90.988 3510.4,133.18 3414.2,131.7 3235.2,127.65 3083,117 3045.1,114.35 3035.9,110.23 2998,108 2738.8,92.729 1935,91.113 \ 1680.9,90.991"]; normal_alignment_and_qc -> cnvkit [_draw_="c 7 -#000000 B 10 3649.93 131.94 3758.17 128.76 3972.82 122.43 4155 117 4288.33 113.03 4321.63 110.51 4455 108 5220.29 93.61 6133.13 \ 91.3 6512.27 91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6512.06 93.45 6519.06 91 6512.06 88.55 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4479.5 110.6 0 49 10 -tumor_cram ", label=tumor_cram, lp="4479.5,112.5", pos="e,6520.6,90.995 3649.9,131.94 3758.2,128.76 3972.8,122.43 4155,117 4288.3,113.03 4321.6,110.51 4455,108 5220.3,93.613 6133.1,91.303 \ 6512.3,91.001"]; tumor_alignment_and_qc -> tumor_summary_hs_metrics [_draw_="c 7 -#000000 B 4 4967.26 125.56 4934.25 109.86 4863.29 76.1 4825.27 58.02 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4826.43 55.86 4819.05 55.06 4824.32 60.28 ", pos="e,4817.7,54.412 4967.3,125.56 4934.2,109.86 4863.3,76.105 4825.3,58.021"]; tumor_alignment_and_qc -> tumor_insert_size_metrics [_draw_="c 7 -#000000 B 4 4982.12 125.56 4977.16 111 4966.91 80.93 4960.53 62.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4962.89 61.55 4958.31 55.72 4958.25 63.13 ", pos="e,4957.8,54.284 4982.1,125.56 4977.2,111 4966.9,80.933 4960.5,62.216"]; tumor_alignment_and_qc -> tumor_per_base_coverage_metrics [_draw_="c 7 -#000000 B 7 4985.98 125.61 4988.04 111.98 4994.12 85.12 5011 71 5015.81 66.97 5042.47 61.06 5068.9 55.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5069.16 58.44 5075.59 54.73 5068.26 53.62 ", pos="e,5077.1,54.45 4986,125.61 4988,111.98 4994.1,85.123 5011,71 5015.8,66.975 5042.5,61.059 5068.9,55.993"]; tumor_alignment_and_qc -> tumor_hs_metrics [_draw_="c 7 -#000000 B 10 4988.6 125.82 4995.64 110.24 5011.45 77.33 5022 71 5040.88 59.68 5198.29 66.67 5220 63 5228.18 61.62 5236.84 59.39 \ 5244.84 56.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5245.5 59.35 5251.44 54.92 5244.03 54.68 ", pos="e,5252.9,54.462 4988.6,125.82 4995.6,110.24 5011.4,77.327 5022,71 5040.9,59.678 5198.3,66.672 5220,63 5228.2,61.617 5236.8,59.387 \ 5244.8,56.991"]; tumor_alignment_and_qc -> tumor_per_target_hs_metrics [_draw_="c 7 -#000000 B 10 4991.84 125.74 5005.51 109.35 5035.44 74.02 5042 71 5070.87 57.7 5296.42 66.61 5328 63 5341.47 61.46 5355.98 58.86 \ 5369.1 56.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5369.25 58.63 5375.59 54.78 5368.23 53.84 ", pos="e,5377.1,54.467 4991.8,125.74 5005.5,109.35 5035.4,74.024 5042,71 5070.9,57.7 5296.4,66.611 5328,63 5341.5,61.461 5356,58.864 5369.1,\ 56.158"]; tumor_alignment_and_qc -> tumor_verify_bam_id_metrics [_draw_="c 7 -#000000 B 16 4996.32 125.51 4999.78 122.83 5003.59 119.84 5007 117 5015.71 109.75 5017.84 107.86 5026 100 5038.91 87.57 5037.57 \ 78.15 5054 71 5076.31 61.29 5467.8 65.62 5492 63 5505.75 61.51 5520.59 58.9 5533.96 56.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5534.24 58.61 5540.59 54.77 5533.23 53.81 ", pos="e,5542.1,54.453 4996.3,125.51 4999.8,122.83 5003.6,119.84 5007,117 5015.7,109.75 5017.8,107.86 5026,100 5038.9,87.574 5037.6,78.151 \ 5054,71 5076.3,61.285 5467.8,65.619 5492,63 5505.8,61.511 5520.6,58.9 5534,56.164"]; tumor_alignment_and_qc -> tumor_cram [_draw_="c 7 -#000000 B 16 5001.73 125.53 5006.45 122.96 5011.51 120.01 5016 117 5025.97 110.31 5027.82 107.74 5037 100 5051.92 87.41 5051.78 \ 78.01 5070 71 5100.49 59.27 5625.98 69.46 5658 63 5663.8 61.83 5669.82 59.88 5675.43 57.71 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5676.37 59.97 5681.88 55.01 5674.48 55.45 ", pos="e,5683.3,54.431 5001.7,125.53 5006.5,122.96 5011.5,120.01 5016,117 5026,110.31 5027.8,107.74 5037,100 5051.9,87.41 5051.8,78.011 \ 5070,71 5100.5,59.269 5626,69.462 5658,63 5663.8,61.829 5669.8,59.878 5675.4,57.706"]; tumor_alignment_and_qc -> tumor_per_base_hs_metrics [_draw_="c 7 -#000000 B 13 5006.48 125.65 5012.56 123.07 5019.13 120.1 5025 117 5058.59 99.29 5060.62 81.88 5097 71 5131.12 60.8 5702.6 66.9 \ 5738 63 5751.12 61.56 5765.26 58.96 5777.99 56.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5778.35 58.65 5784.65 54.74 5777.29 53.87 ", pos="e,5786.1,54.413 5006.5,125.65 5012.6,123.07 5019.1,120.1 5025,117 5058.6,99.29 5060.6,81.877 5097,71 5131.1,60.799 5702.6,66.898 \ 5738,63 5751.1,61.555 5765.3,58.958 5778,56.221"]; tumor_alignment_and_qc -> tumor_mark_duplicates_metrics [_draw_="c 7 -#000000 B 16 5013.4 125.54 5020.85 123.05 5028.82 120.14 5036 117 5050.4 110.71 5053.58 108.18 5067 100 5086.68 88 5087.99 \ 77.85 5110 71 5151.7 58.02 5852.54 67.25 5896 63 5910.98 61.54 5927.17 58.87 5941.69 56.08 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5942.14 58.48 5948.53 54.72 5941.19 53.68 ", pos="e,5950,54.423 5013.4,125.54 5020.9,123.05 5028.8,120.14 5036,117 5050.4,110.71 5053.6,108.18 5067,100 5086.7,88.001 5088,77.851 \ 5110,71 5151.7,58.021 5852.5,67.248 5896,63 5911,61.536 5927.2,58.869 5941.7,56.075"]; tumor_alignment_and_qc -> tumor_verify_bam_id_depth [_draw_="c 7 -#000000 B 16 5021.02 125.53 5029.94 123.1 5039.41 120.21 5048 117 5064.2 110.94 5068.22 108.98 5083 100 5101.46 88.79 5101.52 \ 77.87 5122 71 5147.1 62.57 6048.68 65.88 6075 63 6087.97 61.58 6101.93 58.99 6114.51 56.25 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6114.78 58.71 6121.07 54.78 6113.7 53.92 ", pos="e,6122.5,54.445 5021,125.53 5029.9,123.1 5039.4,120.21 5048,117 5064.2,110.94 5068.2,108.98 5083,100 5101.5,88.788 5101.5,77.874 \ 5122,71 5147.1,62.575 6048.7,65.877 6075,63 6088,61.582 6101.9,58.993 6114.5,56.255"]; tumor_alignment_and_qc -> tumor_flagstats [_draw_="c 7 -#000000 B 10 5024.68 125.55 5054.37 119.59 5096.04 111.99 5133 108 5619.04 55.59 5751.43 152.6 6232 63 6239.13 61.67 6246.62 \ 59.54 6253.57 57.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6254.21 59.61 6260.01 54.98 6252.59 54.98 ", pos="e,6261.4,54.477 5024.7,125.55 5054.4,119.59 5096,111.99 5133,108 5619,55.592 5751.4,152.6 6232,63 6239.1,61.671 6246.6,59.542 6253.6,\ 57.233"]; tumor_alignment_and_qc -> tumor_alignment_summary_metrics [_draw_="c 7 -#000000 B 7 4928.18 125.51 4841.12 112.44 4669.5 86.45 4524 63 4509.99 60.74 4494.89 58.24 4480.75 55.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4481.35 53.48 4474.04 54.73 4480.54 58.31 ", pos="e,4472.6,54.482 4928.2,125.51 4841.1,112.44 4669.5,86.449 4524,63 4510,60.741 4494.9,58.238 4480.8,55.863"]; tumor_alignment_and_qc -> tumor_per_target_coverage_metrics [_draw_="c 7 -#000000 B 4 4950.1 125.56 4883.19 109.39 4737.06 74.06 4664.16 56.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4664.91 54.1 4657.53 54.83 4663.76 58.86 ", pos="e,4656.1,54.477 4950.1,125.56 4883.2,109.39 4737.1,74.059 4664.2,56.434"]; tumor_alignment_and_qc -> detect_variants [_draw_="c 7 -#000000 B 10 4915.29 134.42 4829.01 134.21 4677.72 131.5 4549 117 4527.43 114.57 4522.61 110.07 4501 108 4356.84 94.17 2127.12 \ 91.47 1680.52 91.06 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.7 88.61 1673.69 91.06 1680.69 93.51 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4573.5 110.6 0 49 10 -tumor_cram ", label=tumor_cram, lp="4573.5,112.5", pos="e,1672.2,91.054 4915.3,134.42 4829,134.21 4677.7,131.5 4549,117 4527.4,114.57 4522.6,110.07 4501,108 4356.8,94.175 2127.1,91.466 \ 1680.5,91.062"]; tumor_alignment_and_qc -> cnvkit [_draw_="c 7 -#000000 B 10 5054.69 133.23 5079.19 131.05 5106.46 126.4 5130 117 5136.19 114.53 5135.69 110.14 5142 108 5174 97.14 6111.28 \ 92.85 6512.05 91.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6512.04 93.96 6519.03 91.49 6512.02 89.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5168.5 110.6 0 53 11 -normal_cram ", label=normal_cram, lp="5168.5,112.5", pos="e,6520.5,91.484 5054.7,133.23 5079.2,131.05 5106.5,126.4 5130,117 5136.2,114.53 5135.7,110.14 5142,108 5174,97.137 6111.3,92.851 \ 6512.1,91.512"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2713 125.5 2713 144.5 2749 144.5 2749 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2731 132.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="2731,135", rects="2713,125.5,2749,144.5", width=0.5]; default1 -> detect_variants [_draw_="c 7 -#000000 B 13 2713.34 126.42 2711.88 125.9 2710.42 125.42 2709 125 2690.78 119.6 2684.38 124.68 2667 117 2660.9 114.31 2661.31 \ 110.16 2655 108 2609.13 92.3 1915.48 90.95 1680.3 90.94 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1680.64 88.49 1673.64 90.94 1680.64 93.39 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2710 110.6 0 86 18 -strelka_exome_mode ", label=strelka_exome_mode, lp="2710,112.5", pos="e,1672.1,90.945 2713.3,126.42 2711.9,125.9 2710.4,125.42 2709,125 2690.8,119.6 2684.4,124.68 2667,117 2660.9,114.31 2661.3,110.16 \ 2655,108 2609.1,92.296 1915.5,90.948 1680.3,90.945"]; }