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cluster_outputs {\n    rank = \"same\";\n    style = \"dashed\";\n    labelloc = \"b\";\n    label = \"Workflow Outputs\";\n    \"final_outputs\" [fillcolor=\"#94DDF4\",label=\"final_outputs\"];\n  }\n  \"somatic_exome\" [label=\"exome alignment and somatic variant detection\", fillcolor=\"#F3CEA1\"];\n  \"gatherer\" [label=\"gatherer\"];\n  \"per_target_intervals\" -> \"somatic_exome\" [label=\"per_target_intervals\"];\n  \"varscan_strand_filter\" -> \"somatic_exome\" [label=\"varscan_strand_filter\"];\n  \"target_intervals\" -> \"somatic_exome\" [label=\"target_intervals\"];\n  \"tumor_cram_name\" -> \"somatic_exome\" [label=\"tumor_cram_name\"];\n  \"vep_to_table_fields\" -> \"somatic_exome\" [label=\"vep_to_table_fields\"];\n  \"qc_minimum_mapping_quality\" -> \"somatic_exome\" [label=\"qc_minimum_mapping_quality\"];\n  \"cosmic_vcf\" -> \"somatic_exome\" [label=\"cosmic_vcf\"];\n  \"mutect_max_alt_alleles_in_normal_count\" -> \"somatic_exome\" [label=\"mutect_max_alt_alleles_in_normal_count\"];\n  \"vep_ensembl_assembly\" -> \"somatic_exome\" [label=\"vep_ensembl_assembly\"];\n  \"interval_list\" -> \"somatic_exome\" [label=\"interval_list\"];\n  \"reference\" -> \"somatic_exome\" [label=\"reference\"];\n  \"mutect_scatter_count\" -> \"somatic_exome\" [label=\"mutect_scatter_count\"];\n  \"mills\" -> \"somatic_exome\" [label=\"mills\"];\n  \"bait_intervals\" -> \"somatic_exome\" [label=\"bait_intervals\"];\n  \"mutect_max_alt_allele_in_normal_fraction\" -> \"somatic_exome\" [label=\"mutect_max_alt_allele_in_normal_fraction\"];\n  \"normal_readgroups\" -> \"somatic_exome\" [label=\"normal_readgroups\"];\n  \"vep_ensembl_version\" -> \"somatic_exome\" [label=\"vep_ensembl_version\"];\n  \"known_indels\" -> \"somatic_exome\" [label=\"known_indels\"];\n  \"strelka_cpu_reserved\" -> \"somatic_exome\" [label=\"strelka_cpu_reserved\"];\n  \"picard_metric_accumulation_level\" -> \"somatic_exome\" [label=\"picard_metric_accumulation_level\"];\n  \"bqsr_intervals\" -> \"somatic_exome\" [label=\"bqsr_intervals\"];\n  \"variants_to_table_genotype_fields\" -> \"somatic_exome\" [label=\"variants_to_table_genotype_fields\"];\n  \"omni_vcf\" -> \"somatic_exome\" [label=\"omni_vcf\"];\n  \"hgvs_annotation\" -> \"somatic_exome\" [label=\"hgvs_annotation\"];\n  \"tumor_bams\" -> \"somatic_exome\" [label=\"tumor_bams\"];\n  \"cle_vcf_filter\" -> \"somatic_exome\" [label=\"cle_vcf_filter\"];\n  \"variants_to_table_fields\" -> \"somatic_exome\" [label=\"variants_to_table_fields\"];\n  \"normal_cram_name\" -> \"somatic_exome\" [label=\"normal_cram_name\"];\n  \"panel_of_normals_vcf\" -> \"somatic_exome\" [label=\"panel_of_normals_vcf\"];\n  \"docm_vcf\" -> \"somatic_exome\" [label=\"docm_vcf\"];\n  \"tumor_readgroups\" -> \"somatic_exome\" [label=\"tumor_readgroups\"];\n  \"mutect_artifact_detection_mode\" -> \"somatic_exome\" [label=\"mutect_artifact_detection_mode\"];\n  \"summary_intervals\" -> \"somatic_exome\" [label=\"summary_intervals\"];\n  \"vep_cache_dir\" -> \"somatic_exome\" [label=\"vep_cache_dir\"];\n  \"per_base_intervals\" -> \"somatic_exome\" [label=\"per_base_intervals\"];\n  \"varscan_min_var_freq\" -> \"somatic_exome\" [label=\"varscan_min_var_freq\"];\n  \"qc_minimum_base_quality\" -> \"somatic_exome\" [label=\"qc_minimum_base_quality\"];\n  \"pindel_insert_size\" -> \"somatic_exome\" [label=\"pindel_insert_size\"];\n  \"custom_gnomad_vcf\" -> \"somatic_exome\" [label=\"custom_gnomad_vcf\"];\n  \"dbsnp_vcf\" -> \"somatic_exome\" [label=\"dbsnp_vcf\"];\n  \"varscan_max_normal_freq\" -> \"somatic_exome\" [label=\"varscan_max_normal_freq\"];\n  \"normal_bams\" -> \"somatic_exome\" [label=\"normal_bams\"];\n  \"synonyms_file\" -> \"somatic_exome\" [label=\"synonyms_file\"];\n  \"vep_pick\" -> \"somatic_exome\" [label=\"vep_pick\"];\n  \"varscan_min_coverage\" -> \"somatic_exome\" [label=\"varscan_min_coverage\"];\n  \"somalier_vcf\" -> \"somatic_exome\" [label=\"somalier_vcf\"];\n  \"annotate_coding_only\" -> \"somatic_exome\" [label=\"annotate_coding_only\"];\n  \"vep_ensembl_species\" -> \"somatic_exome\" [label=\"vep_ensembl_species\"];\n  \"varscan_p_value\" -> \"somatic_exome\" [label=\"varscan_p_value\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"somatic_exome\" -> \"gatherer\" [label=\"all_files\"];\n  \"output_dir\" -> \"gatherer\" [label=\"output_dir\"];\n  \"gatherer\" -> \"final_outputs\";\n}\n","licenseLink":"https://spdx.org/licenses/MIT","permalink":"https://w3id.org/cwl/view/git/479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9/definitions/pipelines/gathered_somatic_exome.cwl","packed":false,"visualisationXdot":"/graph/xdot/github.com/genome/analysis-workflows/blob/479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9/definitions/pipelines/gathered_somatic_exome.cwl","visualisationPng":"/graph/png/github.com/genome/analysis-workflows/blob/479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9/definitions/pipelines/gathered_somatic_exome.cwl","visualisationSvg":"/graph/svg/github.com/genome/analysis-workflows/blob/479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9/definitions/pipelines/gathered_somatic_exome.cwl","roBundle":"/robundle/github.com/genome/analysis-workflows/blob/479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9/definitions/pipelines/gathered_somatic_exome.cwl","licenseName":"MIT License"}