digraph workflow {
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			fillcolor="#94DDF4",
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			fillcolor="#94DDF4",
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			label=trimming_adapter_trim_end,
			pos="1289,323",
			rects="1212.5,313.5,1365.5,332.5",
			width=2.125];
		read_group_id	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 631 313.5 631 332.5 717 332.5 717 313.5 ",
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			fillcolor="#94DDF4",
			height=0.27778,
			label=read_group_id,
			pos="674,323",
			rects="631,313.5,717,332.5",
			width=1.1944];
		instrument_data_bams	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 497.5 313.5 497.5 332.5 626.5 332.5 626.5 313.5 ",
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			fillcolor="#94DDF4",
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			pos="562,323",
			rects="497.5,313.5,626.5,332.5",
			width=1.7917];
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	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 116 8 116 63 343 63 343 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 170 15 0 92 16 -Workflow Outputs ",
			bb="116,8,343,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="170,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		cpg_bedgraph	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 124.5 35.5 124.5 54.5 209.5 54.5 209.5 35.5 ",
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			fillcolor="#94DDF4",
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			label=cpg_bedgraph,
			pos="167,45",
			rects="124.5,35.5,209.5,54.5",
			width=1.1806];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 293.5 35.5 293.5 54.5 334.5 54.5 334.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 314 42.5 0 25 4 -cram ",
			fillcolor="#94DDF4",
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			label=cram,
			pos="314,45",
			rects="293.5,35.5,334.5,54.5",
			width=0.56944];
		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 250.5 35.5 250.5 54.5 289.5 54.5 289.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 270 42.5 0 23 4 -cpgs ",
			fillcolor="#94DDF4",
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			label=cpgs,
			pos="270,45",
			rects="250.5,35.5,289.5,54.5",
			width=0.54167];
		vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 214 35.5 214 54.5 246 54.5 246 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 230 42.5 0 16 3 -vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=vcf,
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			rects="214,35.5,246,54.5",
			width=0.44444];
	}
	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 552.5 260.5 552.5 279.5 795.5 279.5 795.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 674 267.5 0 227 44 -bam to trimmed fastqs and biscuit alignments ",
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		pos="674,270",
		rects="552.5,260.5,795.5,279.5",
		width=3.375];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 292.69 313.56 301.9 310.33 312.83 306.96 323 305 376.79 294.63 392.84 310.23 446 297 455.46 294.65 456.56 290.43 \
466 288 490.93 281.58 518.05 277.41 544.22 274.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 544.44 277.18 551.17 274.07 543.97 272.3 ",
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		lp="499,292.5",
		pos="e,552.68,273.92 292.69,313.56 301.9,310.33 312.83,306.96 323,305 376.79,294.63 392.84,310.23 446,297 455.46,294.65 456.56,290.43 \
466,288 490.93,281.58 518.05,277.41 544.22,274.74"];
	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 453 170.5 453 189.5 593 189.5 593 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 523 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="523,180",
		rects="453,170.5,593,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 7 280.23 313.58 305.33 291.17 377.72 229.59 449 198 454.39 195.61 460.15 193.54 465.99 191.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 466.46 194.16 472.52 189.89 465.11 189.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 389 245.6 0 40 9 -reference ",
		label=reference,
		lp="389,247.5",
		pos="e,473.97,189.47 280.23,313.58 305.33,291.17 377.72,229.59 449,198 454.39,195.61 460.15,193.54 465.99,191.75"];
	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 261.5 170.5 261.5 189.5 344.5 189.5 344.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 303 177.5 0 67 14 -Biscuit pileup ",
		height=0.27778,
		label="Biscuit pileup",
		pos="303,180",
		rects="261.5,170.5,344.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 4 272.91 313.6 278.08 290.82 292.44 227.55 299.28 197.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 301.65 198.02 300.81 190.65 296.87 196.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 309 245.6 0 40 9 -reference ",
		label=reference,
		lp="309,247.5",
		pos="e,301.14,189.18 272.91,313.6 278.08,290.82 292.44,227.55 299.28,197.39"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 452.22 313.56 486.62 306.93 529.14 298.56 533 297 539.86 294.23 540.06 290.55 547 288 553.98 285.44 561.3 283.25 \
568.75 281.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 569.14 283.82 575.41 279.84 568.03 279.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 590 290.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="590,292.5",
		pos="e,576.88,279.5 452.22,313.56 486.62,306.93 529.14,298.56 533,297 539.86,294.23 540.06,290.55 547,288 553.98,285.44 561.3,283.25 \
568.75,281.39"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 845.15 313.58 809.69 304.76 753.94 290.89 715.77 281.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 716.76 279.11 709.37 279.8 715.57 283.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 804.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="804.5,292.5",
		pos="e,707.9,279.43 845.15,313.58 809.69,304.76 753.94,290.89 715.77,281.39"];
	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 0 80.5 0 99.5 168 99.5 168 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 84 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="84,90",
		rects="0,80.5,168,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 154.46 313.53 139.18 305.13 120 290.67 120 271 120 271 120 271 120 134 120 122.21 111.94 111.95 103.45 104.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 105.16 102.64 98.17 100.15 102.08 106.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 152.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="152.5,202.5",
		pos="e,96.997,99.197 154.46,313.53 139.18,305.13 120,290.67 120,271 120,271 120,271 120,134 120,122.21 111.94,111.95 103.45,104.41"];
	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 979.46 313.55 969.37 310.55 957.73 307.34 947 305 894.73 293.59 835.94 285.66 786.33 280.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 786.86 277.93 779.64 279.63 786.35 282.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 920.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="920.5,292.5",
		pos="e,778.14,279.48 979.46,313.55 969.37,310.55 957.73,307.34 947,305 894.73,293.59 835.94,285.66 786.33,280.34"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1102.4 313.52 1089.74 310.58 1075.27 307.42 1062 305 976.64 289.41 879.36 280.9 803.57 276.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 804.01 273.87 796.88 275.9 803.72 278.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1041 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="1041,292.5",
		pos="e,795.37,275.81 1102.4,313.52 1089.7,310.58 1075.3,307.42 1062,305 976.64,289.41 879.36,280.9 803.57,276.3"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1252.48 313.56 1238.88 310.6 1223.28 307.41 1209 305 1071.93 281.85 912.69 274.14 803.81 271.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 803.97 269.29 796.92 271.59 803.87 274.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1187 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="1187,292.5",
		pos="e,795.41,271.55 1252.5,313.56 1238.9,310.6 1223.3,307.41 1209,305 1071.9,281.85 912.69,274.14 803.81,271.73"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 674 313.58 674 306.52 674 296.24 674 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 676.45 287.78 674 280.78 671.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 703 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="703,292.5",
		pos="e,674,279.26 674,313.58 674,306.52 674,296.24 674,287.55"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 591.38 313.58 604.69 309.32 620.45 303.63 634 297 641.54 293.31 649.38 288.47 656.1 283.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 657.27 286.13 661.64 280.14 654.48 282.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 657.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="657.5,292.5",
		pos="e,662.88,279.28 591.38,313.58 604.69,309.32 620.45,303.63 634,297 641.54,293.31 649.38,288.47 656.1,283.96"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 468 215.5 468 234.5 578 234.5 578 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 523 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="523,225",
		rects="468,215.5,578,234.5",
		width=1.5278];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 523 215.71 523 210.59 523 203.85 523 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 525.45 197.78 523 190.78 520.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 532.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="532.5,202.5",
		pos="e,523,189.27 523,215.71 523,210.59 523,203.85 523,197.67"];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 479.54 215.5 442.83 208.33 390.28 198.06 352.07 190.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 352.97 188.27 345.63 189.33 352.03 193.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 441.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="441.5,202.5",
		pos="e,344.14,189.04 479.54,215.5 442.83,208.33 390.28,198.06 352.07,190.59"];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 644.17 260.5 620.28 253.7 586.62 244.12 560.84 236.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 561.63 234.45 554.23 234.89 560.29 239.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 623.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="623.5,247.5",
		pos="e,552.77,234.48 644.17,260.5 620.28,253.7 586.62,244.12 560.84,236.78"];
	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 142 125.5 142 144.5 524 144.5 524 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 333 132.5 0 366 77 -convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script ",
		height=0.27778,
		label="convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script",
		pos="333,135",
		rects="142,125.5,524,144.5",
		width=5.3056];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 4 326.96 125.56 316.3 110.67 294.03 79.56 280.71 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 282.88 59.78 276.81 55.51 278.89 62.63 ",
		pos="e,275.93,54.284 326.96,125.56 316.3,110.67 294.03,79.565 280.71,60.963"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 283.81 125.5 242.8 118.42 184.32 108.32 141.22 100.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 141.9 98.51 134.58 99.74 141.06 103.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 251 110.6 0 40 8 -bedgraph ",
		label=bedgraph,
		lp="251,112.5",
		pos="e,133.09,99.478 283.81,125.5 242.8,118.42 184.32,108.32 141.22,100.88"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 383.5 80.5 383.5 99.5 502.5 99.5 502.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 443 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="443,90",
		rects="383.5,80.5,502.5,99.5",
		width=1.6528];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 417.51 80.5 395.8 73.27 364.64 62.88 342.19 55.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 343.2 53.15 335.78 53.26 341.65 57.8 ",
		pos="e,334.35,52.782 417.51,80.505 395.8,73.267 364.64,62.881 342.19,55.397"];
	bedgraph_to_bigwig -> cpg_bedgraph	[_draw_="c 7 -#000000 B 4 100.4 80.5 112.68 74.14 129.65 65.35 143.39 58.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 144.2 60.57 149.29 55.17 141.95 56.22 ",
		pos="e,150.64,54.478 100.4,80.505 112.68,74.144 129.65,65.351 143.39,58.233"];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 525.91 170.5 529.24 159.11 533.14 138.74 524 125 517.21 114.78 506.69 107.63 495.45 102.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 496.41 100.37 489 100.05 494.6 104.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 539.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="539.5,135",
		pos="e,487.6,99.491 525.91,170.5 529.24,159.11 533.14,138.74 524,125 517.21,114.78 506.69,107.63 495.45,102.62"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 10 261.67 176.07 219.06 172.09 156.8 163.25 142 145 136.4 138.1 138.38 133.12 142 125 143.93 120.67 188.85 81.49 \
213.75 59.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 215.34 61.85 219.04 55.42 212.14 58.14 ",
		pos="e,220.19,54.43 261.67,176.07 219.06,172.09 156.8,163.25 142,145 136.4,138.1 138.38,133.12 142,125 143.93,120.67 188.85,81.491 213.75,\
59.984"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 308.78 170.71 312.69 165.12 317.94 157.58 322.57 150.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 324.37 152.65 326.37 145.51 320.35 149.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 326.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="326.5,157.5",
		pos="e,327.23,144.27 308.78,170.71 312.69,165.12 317.94,157.58 322.57,150.96"];
}