@prefix rdf:   <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix CommandLineBinding: <https://w3id.org/cwl/cwl#CommandLineBinding/> .
@prefix Dirent: <https://w3id.org/cwl/cwl#Dirent/> .
@prefix xsd:   <http://www.w3.org/2001/XMLSchema#> .
@prefix cwl:   <https://w3id.org/cwl/cwl#> .
@prefix Workflow: <https://w3id.org/cwl/cwl#Workflow/> .
@prefix sld:   <https://w3id.org/cwl/salad#> .
@prefix rdfs:  <http://www.w3.org/2000/01/rdf-schema#> .
@prefix CommandOutputBinding: <https://w3id.org/cwl/cwl#CommandOutputBinding/> .
@prefix ns1:   <http://commonwl.org/cwltool#> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information/outfile>
        sld:default  "ref_no_organelle.gi" .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#input>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-i" ] ;
        sld:type          cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#taxid>
        sld:type  xsd:int .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information/gc_assembly>
        cwl:source  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences/gencoll_asn> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_get_molecules.cwl>
        a                        cwl:CommandLineTool ;
        rdfs:label               "Extract Assembly Information I" ;
        ns1:original_cwlVersion  "v1.2" ;
        cwl:arguments            ( "-level" "top-level" "-nogenbank" ) ;
        cwl:baseCommand          ( "gc_get_molecules" ) ;
        cwl:cwlVersion           cwl:v1.2 ;
        cwl:inputs               <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_get_molecules.cwl#filter> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_get_molecules.cwl#outfile> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_get_molecules.cwl#gc_assembly> ;
        cwl:outputs              <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_get_molecules.cwl#seqid_list> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl#asn_cache>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-asn-cache" ] ;
        sld:type          cwl:Directory .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#oseq_ids>
        cwl:outputBinding  [ CommandOutputBinding:glob
                          "$(inputs.seq_ids_name)" ] ;
        sld:type           cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#molinfo>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-molinfo" ] ;
        sld:type          xsd:string , sld:null .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#ids_out>
        cwl:outputSource  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/oseq_ids> ;
        sld:type          cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#taxon_db>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-taxon-db" ] ;
        sld:type          cwl:File , sld:null .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_get_molecules.cwl#seqid_list>
        cwl:outputBinding  [ CommandOutputBinding:glob
                          "$(inputs.outfile)" ] ;
        sld:type           cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_get_molecules.cwl#gc_assembly>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-gc-assembly" ] ;
        sld:type          cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information_XML/asnfile>
        cwl:source  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences/gencoll_asn> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information_XML>
        cwl:in   <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information_XML/asnfile> ;
        cwl:out  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information_XML/stats_report> ;
        cwl:run  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_asm_xml_description.cwl> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl>
        a                        cwl:CommandLineTool ;
        rdfs:label               "prime_cache" ;
        ns1:original_cwlVersion  "v1.2" ;
        cwl:baseCommand          ( "prime_cache" ) ;
        cwl:cwlVersion           cwl:v1.2 ;
        cwl:inputs               <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#input> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#submit_block_template> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#inst_mol> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#biosource> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#taxon_db> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#taxid> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#seq_ids_name> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#molinfo> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#ifmt> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#cache_dir> ;
        cwl:outputs              <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#asn_cache> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#oseq_ids> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/taxid>
        cwl:source  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#taxid> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#taxid>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-taxid" ] ;
        sld:type          xsd:int , sld:null .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information>
        cwl:in   <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information/filter> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information/gc_assembly> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information/outfile> ;
        cwl:out  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information/seqid_list> ;
        cwl:run  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_get_molecules.cwl> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl#gc_assm_name>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-gc-assm-name" ] ;
        sld:type          xsd:string .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl#outfile>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-o" ] ;
        sld:default       "gencoll.asn" ;
        sld:type          xsd:string , sld:null .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#asncache>
        cwl:outputSource  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/asn_cache> ;
        sld:type          cwl:Directory .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_get_molecules.cwl#filter>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-filter" ] ;
        sld:type          xsd:string .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_asm_xml_description.cwl#asnfile>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-i" ] ;
        sld:type          cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_get_molecules.cwl#outfile>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-o" ] ;
        sld:type          xsd:string .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#gc_assm_name>
        sld:type  xsd:string .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl#gencoll_asn>
        cwl:outputBinding  [ CommandOutputBinding:glob
                          "$(inputs.outfile)" ] ;
        sld:type           cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#submit_block_template>
        sld:type  cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information/filter>
        sld:default  "reference-no-organelle" .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#stats_report>
        cwl:outputSource  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information_XML/stats_report> ;
        sld:type          cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#seqid_list>
        cwl:outputSource  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information/seqid_list> ;
        sld:type          cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_asm_xml_description.cwl>
        a                        cwl:CommandLineTool ;
        rdfs:label               "Extract Assembly Information II" ;
        ns1:original_cwlVersion  "v1.2" ;
        cwl:baseCommand          ( "gc_asm_xml_description" ) ;
        cwl:cwlVersion           cwl:v1.2 ;
        cwl:inputs               <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_asm_xml_description.cwl#outfile> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_asm_xml_description.cwl#asnfile> ;
        cwl:outputs              <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_asm_xml_description.cwl#stats_report> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#biosource>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-biosource" ] ;
        sld:type          xsd:string , sld:null .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#seq_ids_name>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-oseq-ids" ] ;
        sld:default       "oseq-ids.seqids" ;
        sld:type          xsd:string .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#cache_dir>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-cache" ] ;
        sld:default       "sequence_cache" ;
        sld:type          xsd:string .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#gencoll_asn>
        cwl:outputSource  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences/gencoll_asn> ;
        sld:type          cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#taxon_db>
        sld:type  cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_asm_xml_description.cwl#outfile>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-o" ] ;
        sld:default       "assembly.report.xml" ;
        sld:type          xsd:string , sld:null .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#ifmt>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-ifmt" ] ;
        sld:default       "fasta" ;
        sld:type          xsd:string , sld:null .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl>
        a                        cwl:Workflow ;
        rdfs:label               "Create Genomic Collection for Bacterial Pipeline" ;
        ns1:original_cwlVersion  "v1.2" ;
        Workflow:steps           <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Extract_Assembly_Information_XML> ;
        cwl:cwlVersion           cwl:v1.2 ;
        cwl:inputs               <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#taxon_db> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#taxid> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#gc_assm_name> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#submit_block_template> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#fasta> ;
        cwl:outputs              <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#ids_out> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#gencoll_asn> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#stats_report> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#seqid_list> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#asncache> ;
        cwl:requirements         [ a  cwl:ScatterFeatureRequirement ] .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#inst_mol>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-inst-mol" ] ;
        sld:type          xsd:string , sld:null .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#asn_cache>
        cwl:outputBinding  [ CommandOutputBinding:glob
                          "$(inputs.cache_dir)" ] ;
        sld:type           cwl:Directory .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl>
        a                        cwl:CommandLineTool ;
        rdfs:label               "Create Assembly From Sequences" ;
        ns1:original_cwlVersion  "v1.2" ;
        cwl:arguments            ( "-nogenbank" ) ;
        cwl:baseCommand          ( "gc_create" ) ;
        cwl:cwlVersion           cwl:v1.2 ;
        cwl:inputs               <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl#unplaced> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl#gc_assm_name> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl#outfile> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl#asn_cache> ;
        cwl:outputs              <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl#gencoll_asn> ;
        cwl:requirements         [ a            cwl:InitialWorkDirRequirement ;
                                   cwl:listing  [ Dirent:writable  false ;
                                                  cwl:entry        "$(inputs.asn_cache)"
                                                ]
                                 ] .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl#unplaced>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-unplaced" ] ;
        sld:type          cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences/asn_cache>
        cwl:source  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/asn_cache> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl#submit_block_template>
        cwl:inputBinding  [ CommandLineBinding:prefix
                          "-submit-block-template" ] ;
        sld:type          cwl:File , sld:null .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences>
        cwl:in   <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences/gc_assm_name> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences/unplaced> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences/asn_cache> ;
        cwl:out  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences/gencoll_asn> ;
        cwl:run  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_create.cwl> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences/gc_assm_name>
        cwl:source  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#gc_assm_name> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/gc_asm_xml_description.cwl#stats_report>
        cwl:outputBinding  [ CommandOutputBinding:glob
                          "$(inputs.outfile)" ] ;
        sld:type           cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#fasta>
        sld:type  cwl:File .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/taxon_db>
        cwl:source  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#taxon_db> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/submit_block_template>
        cwl:source  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#submit_block_template> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Create_Assembly_From_Sequences/unplaced>
        cwl:source  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/oseq_ids> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences>
        cwl:in   <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/input> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/submit_block_template> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/taxon_db> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/taxid> ;
        cwl:out  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/asn_cache> , <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/oseq_ids> ;
        cwl:run  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/progs/prime_cache.cwl> .

<https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#Cache_FASTA_Sequences/input>
        cwl:source  <https://w3id.org/cwl/view/git/2801ce53744a085580a8de91cd007c45146b51e8/genomic_source/wf_genomic_source.cwl#fasta> .