digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 720 1764 720 1764 0 ",
		bb="0,0,1764,720",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 390 620 390 675 1034 675 1034 620 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 440 663 0 84 15 -Workflow Inputs ",
			bb="390,620,1034,675",
			label="Workflow Inputs",
			lheight=0.15,
			lp="440,665.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		genome_sizes_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 918.5 628.5 918.5 647.5 1025.5 647.5 1025.5 628.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 972 635.5 0 91 17 -genome_sizes_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=genome_sizes_file,
			pos="972,638",
			rects="918.5,628.5,1025.5,647.5",
			width=1.4861];
		picard_java_opts	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 752.5 628.5 752.5 647.5 851.5 647.5 851.5 628.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 802 635.5 0 83 16 -picard_java_opts ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=picard_java_opts,
			pos="802,638",
			rects="752.5,628.5,851.5,647.5",
			width=1.375];
		nthreads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 855.5 628.5 855.5 647.5 914.5 647.5 914.5 628.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 885 635.5 0 43 8 -nthreads ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=nthreads,
			pos="885,638",
			rects="855.5,628.5,914.5,647.5",
			width=0.81944];
		input_fastq_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 398.5 628.5 398.5 647.5 495.5 647.5 495.5 628.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 447 635.5 0 81 17 -input_fastq_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=input_fastq_files,
			pos="447,638",
			rects="398.5,628.5,495.5,647.5",
			width=1.3472];
		picard_jar_path	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 656 628.5 656 647.5 748 647.5 748 628.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 702 635.5 0 76 15 -picard_jar_path ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=picard_jar_path,
			pos="702,638",
			rects="656,628.5,748,647.5",
			width=1.2778];
		genome_ref_first_index_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 500 628.5 500 647.5 652 647.5 652 628.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 576 635.5 0 136 27 -genome_ref_first_index_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=genome_ref_first_index_file,
			pos="576,638",
			rects="500,628.5,652,647.5",
			width=2.1111];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 1756 63 1756 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,1756,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		output_read_count_mapped	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 35.5 16 54.5 168 54.5 168 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 92 42.5 0 136 24 -output_read_count_mapped ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_read_count_mapped,
			pos="92,45",
			rects="16,35.5,168,54.5",
			width=2.1111];
		output_percentage_uniq_reads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1421.5 35.5 1421.5 54.5 1588.5 54.5 1588.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1505 42.5 0 151 28 -output_percentage_uniq_reads ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_percentage_uniq_reads,
			pos="1505,45",
			rects="1421.5,35.5,1588.5,54.5",
			width=2.3194];
		output_pbc_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1321 35.5 1321 54.5 1417 54.5 1417 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1369 42.5 0 80 16 -output_pbc_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_pbc_files,
			pos="1369,45",
			rects="1321,35.5,1417,54.5",
			width=1.3333];
		output_picard_mark_duplicates_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 922.5 35.5 922.5 54.5 1117.5 54.5 1117.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1020 42.5 0 179 35 -output_picard_mark_duplicates_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_picard_mark_duplicates_files,
			pos="1020,45",
			rects="922.5,35.5,1117.5,54.5",
			width=2.7083];
		output_percent_mitochondrial_reads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1121.5 35.5 1121.5 54.5 1316.5 54.5 1316.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1219 42.5 0 179 34 -output_percent_mitochondrial_reads ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_percent_mitochondrial_reads,
			pos="1219,45",
			rects="1121.5,35.5,1316.5,54.5",
			width=2.7083];
		output_read_count_mapped_filtered	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 726 35.5 726 54.5 918 54.5 918 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 822 42.5 0 176 33 -output_read_count_mapped_filtered ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_read_count_mapped_filtered,
			pos="822,45",
			rects="726,35.5,918,54.5",
			width=2.6667];
		output_data_sorted_dups_marked_bam_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 284 35.5 284 54.5 518 54.5 518 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 401 42.5 0 218 40 -output_data_sorted_dups_marked_bam_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_data_sorted_dups_marked_bam_files,
			pos="401,45",
			rects="284,35.5,518,54.5",
			width=3.25];
		output_bowtie_log	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 172.5 35.5 172.5 54.5 279.5 54.5 279.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 226 42.5 0 91 17 -output_bowtie_log ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_bowtie_log,
			pos="226,45",
			rects="172.5,35.5,279.5,54.5",
			width=1.4861];
		output_data_sorted_dedup_bam_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 522.5 35.5 522.5 54.5 721.5 54.5 721.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 622 42.5 0 183 34 -output_data_sorted_dedup_bam_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_data_sorted_dedup_bam_files,
			pos="622,45",
			rects="522.5,35.5,721.5,54.5",
			width=2.7639];
		output_preseq_c_curve_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1592.5 35.5 1592.5 54.5 1747.5 54.5 1747.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1670 42.5 0 139 27 -output_preseq_c_curve_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_preseq_c_curve_files,
			pos="1670,45",
			rects="1592.5,35.5,1747.5,54.5",
			width=2.1528];
	}
	execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1098 350.5 1098 369.5 1256 369.5 1256 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1177 357.5 0 142 27 -execute_pcr_bottleneck_coef ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label=execute_pcr_bottleneck_coef,
		pos="1177,360",
		rects="1098,350.5,1256,369.5",
		width=2.1944];
	genome_sizes_file -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 16 998.08 628.55 1016.53 620.76 1038 607.14 1038 586 1038 586 1038 586 1038 494 1038 482.03 1035.95 475.83 1045 468 \
1067.68 448.38 1086.5 475.79 1112 460 1143.31 440.61 1162.63 399.89 1171.41 377.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1173.61 378.27 1173.73 370.86 1169.02 376.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1067.5 493.1 0 59 12 -genome_sizes ",
		label=genome_sizes,
		lp="1067.5,495",
		pos="e,1174.3,369.44 998.08,628.55 1016.5,620.76 1038,607.14 1038,586 1038,586 1038,586 1038,494 1038,482.03 1036,475.83 1045,468 1067.7,\
448.38 1086.5,475.79 1112,460 1143.3,440.61 1162.6,399.89 1171.4,377.18"];
	mark_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 867 305.5 867 324.5 965 324.5 965 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 916 312.5 0 82 15 -mark_duplicates ",
		height=0.27778,
		label=mark_duplicates,
		pos="916,315",
		rects="867,305.5,965,324.5",
		width=1.3611];
	picard_java_opts -> mark_duplicates	[_draw_="c 7 -#000000 B 10 802 628.7 802 618.6 802 601.05 802 586 802 586 802 586 802 359 802 331.95 830.45 321.2 858.92 317.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 859.16 319.64 865.82 316.39 858.58 314.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 822 470.6 0 40 9 -java_opts ",
		label=java_opts,
		lp="822,472.5",
		pos="e,867.32,316.21 802,628.7 802,618.6 802,601.05 802,586 802,586 802,586 802,359 802,331.95 830.45,321.2 858.92,317.2"];
	sort_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 781 260.5 781 279.5 919 279.5 919 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 850 267.5 0 122 21 -sort_dups_marked_bams ",
		height=0.27778,
		label=sort_dups_marked_bams,
		pos="850,270",
		rects="781,260.5,919,279.5",
		width=1.9167];
	nthreads -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 10 874.69 628.8 864.36 619.59 850 603.61 850 586 850 586 850 586 850 314 850 305.31 850 295.63 850 287.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 852.45 287.76 850 280.76 847.55 287.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 868.5 448.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="868.5,450",
		pos="e,850,279.24 874.69,628.8 864.36,619.59 850,603.61 850,586 850,586 850,586 850,314 850,305.31 850,295.63 850,287.65"];
	sam2bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 857.5 530.5 857.5 549.5 922.5 549.5 922.5 530.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 890 537.5 0 49 7 -sam2bam ",
		height=0.27778,
		label=sam2bam,
		pos="890,540",
		rects="857.5,530.5,922.5,549.5",
		width=0.90278];
	nthreads -> sam2bam	[_draw_="c 7 -#000000 B 7 882.09 628.79 880.54 623.97 878.79 617.72 878 612 875.41 593.13 880.15 571.57 884.42 557.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 886.69 558.14 886.48 550.72 882.02 556.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 897.5 583.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="897.5,585",
		pos="e,886.94,549.28 882.09,628.79 880.54,623.97 878.79,617.72 878,612 875.41,593.13 880.15,571.57 884.42,557.21"];
	sort_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 689.5 125.5 689.5 144.5 792.5 144.5 792.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 741 132.5 0 87 15 -sort_dedup_bams ",
		height=0.27778,
		label=sort_dedup_bams,
		pos="741,135",
		rects="689.5,125.5,792.5,144.5",
		width=1.4306];
	nthreads -> sort_dedup_bams	[_draw_="c 7 -#000000 B 13 870.93 628.66 865.21 625.57 858.45 622.26 852 620 816.06 607.38 684 624.09 684 586 684 586 684 586 684 179 684 \
164.91 695.24 154.85 707.74 148.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 708.61 150.33 713.81 145.04 706.45 145.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 702.5 380.6 0 37 8 -nthreads ",
		label=nthreads,
		lp="702.5,382.5",
		pos="e,715.17,144.37 870.93,628.66 865.21,625.57 858.45,622.26 852,620 816.06,607.38 684,624.09 684,586 684,586 684,586 684,179 684,164.91 \
695.24,154.85 707.74,148.03"];
	filtered2sorted	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1018 395.5 1018 414.5 1106 414.5 1106 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1062 402.5 0 72 15 -filtered2sorted ",
		height=0.27778,
		label=filtered2sorted,
		pos="1062,405",
		rects="1018,395.5,1106,414.5",
		width=1.2222];
	nthreads -> filtered2sorted	[_draw_="c 7 -#000000 B 13 900.31 628.63 906.07 625.67 912.74 622.47 919 620 952.67 606.71 993 622.19 993 586 993 586 993 586 993 449 993 \
434.11 1004.71 424.19 1018.48 417.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1019.39 419.95 1024.89 414.98 1017.49 415.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1011.5 515.6 0 37 8 -nthreads ",
		label=nthreads,
		lp="1011.5,517.5",
		pos="e,1026.3,414.4 900.31,628.63 906.07,625.67 912.74,622.47 919,620 952.67,606.71 993,622.19 993,586 993,586 993,586 993,449 993,434.11 \
1004.7,424.19 1018.5,417.68"];
	sort_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 907 485.5 907 504.5 975 504.5 975 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 941 492.5 0 52 9 -sort_bams ",
		height=0.27778,
		label=sort_bams,
		pos="941,495",
		rects="907,485.5,975,504.5",
		width=0.94444];
	nthreads -> sort_bams	[_draw_="c 7 -#000000 B 10 900.74 628.66 906.42 625.77 912.94 622.61 919 620 928.56 615.89 935.03 620.52 941 612 951.9 596.44 946.73 540.81 \
943.26 512.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 945.7 512.34 942.37 505.71 940.84 512.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 965.5 560.6 0 37 8 -nthreads ",
		label=nthreads,
		lp="965.5,562.5",
		pos="e,942.18,504.21 900.74,628.66 906.42,625.77 912.94,622.61 919,620 928.56,615.89 935.03,620.52 941,612 951.9,596.44 946.73,540.81 \
943.26,512.62"];
	"bowtie-se"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 486.5 575.5 486.5 594.5 551.5 594.5 551.5 575.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 519 582.5 0 49 9 -bowtie-se ",
		height=0.27778,
		label="bowtie-se",
		pos="519,585",
		rects="486.5,575.5,551.5,594.5",
		width=0.90278];
	nthreads -> "bowtie-se"	[_draw_="c 7 -#000000 B 13 872.05 628.66 866.17 625.32 858.98 621.83 852 620 807.05 608.19 686.8 627.54 643 612 636.72 609.77 637.15 605.58 \
631 603 608.42 593.53 581.32 589.25 559.43 587.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 559.69 584.92 552.53 586.83 559.32 589.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 661.5 605.6 0 37 8 -nthreads ",
		label=nthreads,
		lp="661.5,607.5",
		pos="e,551.02,586.72 872.05,628.66 866.17,625.32 858.98,621.83 852,620 807.05,608.19 686.8,627.54 643,612 636.72,609.77 637.15,605.58 \
631,603 608.42,593.53 581.32,589.25 559.43,587.35"];
	extract_basename_1	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 715.5 700.5 715.5 719.5 834.5 719.5 834.5 700.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 775 707.5 0 103 18 -extract_basename_1 ",
		height=0.27778,
		label=extract_basename_1,
		pos="775,710",
		rects="715.5,700.5,834.5,719.5",
		width=1.6528];
	input_fastq_files -> extract_basename_1	[_draw_="c 7 -#000000 B 7 456.37 647.43 466.39 655.92 483.13 668.65 500 675 567.59 700.43 650.47 707.73 707.47 709.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 707.12 711.85 714.18 709.58 707.24 706.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 569 685.6 0 38 10 -input_file ",
		label=input_file,
		lp="569,687.5",
		pos="e,715.69,709.62 456.37,647.43 466.39,655.92 483.13,668.65 500,675 567.59,700.43 650.47,707.73 707.47,709.41"];
	input_fastq_files -> "bowtie-se"	[_draw_="c 7 -#000000 B 7 446.69 628.59 446.88 620.93 448.41 609.78 455 603 461.32 596.5 469.82 592.39 478.55 589.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 478.9 592.25 485.12 588.22 477.74 587.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 486.5 605.6 0 63 16 -input_fastq_file ",
		label=input_fastq_file,
		lp="486.5,607.5",
		pos="e,486.59,587.86 446.69,628.59 446.88,620.93 448.41,609.78 455,603 461.32,596.5 469.82,592.39 478.55,589.82"];
	picard_jar_path -> mark_duplicates	[_draw_="c 7 -#000000 B 10 709.95 628.74 718.23 619.23 730 602.77 730 586 730 586 730 586 730 359 730 332.2 804.21 322.1 858.88 318.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 858.79 320.76 865.62 317.86 858.48 315.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 761.5 470.6 0 63 15 -picard_jar_path ",
		label=picard_jar_path,
		lp="761.5,472.5",
		pos="e,867.13,317.76 709.95,628.74 718.23,619.23 730,602.77 730,586 730,586 730,586 730,359 730,332.2 804.21,322.1 858.88,318.3"];
	genome_ref_first_index_file -> "bowtie-se"	[_draw_="c 7 -#000000 B 7 545.51 628.6 537.02 624.84 528.6 619.5 523 612 520.91 609.2 519.71 605.75 519.06 602.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 521.52 602.3 518.49 595.53 516.63 602.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 578.5 605.6 0 111 27 -genome_ref_first_index_file ",
		label=genome_ref_first_index_file,
		lp="578.5,607.5",
		pos="e,518.36,594.02 545.51,628.6 537.02,624.84 528.6,619.5 523,612 520.91,609.2 519.71,605.75 519.06,602.28"];
	index_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 691 215.5 691 234.5 837 234.5 837 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 764 222.5 0 130 22 -index_dups_marked_bams ",
		height=0.27778,
		label=index_dups_marked_bams,
		pos="764,225",
		rects="691,215.5,837,234.5",
		width=2.0278];
	sort_dups_marked_bams -> index_dups_marked_bams	[_draw_="c 7 -#000000 B 4 833.01 260.5 820.29 254.14 802.7 245.35 788.47 238.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 789.67 236.09 782.31 235.15 787.47 240.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 833 245.6 0 38 10 -input_file ",
		label=input_file,
		lp="833,247.5",
		pos="e,780.96,234.48 833.01,260.5 820.29,254.14 802.7,245.35 788.47,238.23"];
	mark_duplicates -> output_picard_mark_duplicates_files	[_draw_="c 7 -#000000 B 10 940.6 305.53 955.25 298.75 971 287.61 971 271 971 271 971 271 971 89 971 75.82 981.14 65.73 992.2 58.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 993.36 60.81 998.19 55.18 990.91 56.57 ",
		pos="e,999.5,54.426 940.6,305.53 955.25,298.75 971,287.61 971,271 971,271 971,271 971,89 971,75.816 981.14,65.727 992.2,58.647"];
	mark_duplicates -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 4 902.96 305.5 893.56 299.38 880.7 291 870 284.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 871.48 282.07 864.28 280.3 868.81 286.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 907 290.6 0 38 10 -input_file ",
		label=input_file,
		lp="907,292.5",
		pos="e,863.01,279.48 902.96,305.5 893.56,299.38 880.7,291 870,284.03"];
	"preseq-c-curve"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1330.5 125.5 1330.5 144.5 1419.5 144.5 1419.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1375 132.5 0 73 14 -preseq-c-curve ",
		height=0.27778,
		label="preseq-c-curve",
		pos="1375,135",
		rects="1330.5,125.5,1419.5,144.5",
		width=1.2361];
	"preseq-c-curve" -> output_preseq_c_curve_files	[_draw_="c 7 -#000000 B 7 1419.22 134.32 1453.46 133.42 1501.68 129.65 1542 117 1584.19 103.77 1628.16 75.72 1652 59.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1653.19 61.27 1657.49 55.23 1650.36 57.27 ",
		pos="e,1658.7,54.356 1419.2,134.32 1453.5,133.42 1501.7,129.65 1542,117 1584.2,103.77 1628.2,75.722 1652,59.114"];
	percent_uniq_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1442 80.5 1442 99.5 1554 99.5 1554 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1498 87.5 0 96 18 -percent_uniq_reads ",
		height=0.27778,
		label=percent_uniq_reads,
		pos="1498,90",
		rects="1442,80.5,1554,99.5",
		width=1.5556];
	"preseq-c-curve" -> percent_uniq_reads	[_draw_="c 7 -#000000 B 4 1399.3 125.5 1418.34 118.85 1444.99 109.53 1465.8 102.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1466.52 104.6 1472.32 99.98 1464.9 99.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1494 110.6 0 94 22 -preseq_c_curve_outfile ",
		label=preseq_c_curve_outfile,
		lp="1494,112.5",
		pos="e,1473.7,99.478 1399.3,125.5 1418.3,118.85 1445,109.53 1465.8,102.26"];
	remove_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 704 170.5 704 189.5 814 189.5 814 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 759 177.5 0 94 17 -remove_duplicates ",
		height=0.27778,
		label=remove_duplicates,
		pos="759,180",
		rects="704,170.5,814,189.5",
		width=1.5278];
	remove_duplicates -> sort_dedup_bams	[_draw_="c 7 -#000000 B 4 755.53 170.71 753.29 165.36 750.3 158.22 747.62 151.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 750.01 151.17 745.04 145.66 745.49 153.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 770 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="770,157.5",
		pos="e,744.46,144.27 755.53,170.71 753.29,165.36 750.3,158.22 747.62,151.81"];
	extract_basename_2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1054.5 628.5 1054.5 647.5 1173.5 647.5 1173.5 628.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1114 635.5 0 103 18 -extract_basename_2 ",
		height=0.27778,
		label=extract_basename_2,
		pos="1114,638",
		rects="1054.5,628.5,1173.5,647.5",
		width=1.6528];
	extract_basename_1 -> extract_basename_2	[_draw_="c 7 -#000000 B 7 834.36 706.26 887.73 702.62 967.82 694.23 1035 675 1054.87 669.31 1076.11 659.39 1091.56 651.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1092.69 653.58 1097.74 648.14 1090.4 649.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1018 685.6 0 36 9 -file_path ",
		label=file_path,
		lp="1018,687.5",
		pos="e,1099.1,647.43 834.36,706.26 887.73,702.62 967.82,694.23 1035,675 1054.9,669.31 1076.1,659.39 1091.6,651.4"];
	extract_basename_2 -> mark_duplicates	[_draw_="c 7 -#000000 B 22 1111.37 628.79 1108.41 618.8 1104 601.34 1104 586 1104 586 1104 586 1104 516.5 1104 502.16 1107.39 494.88 1097 \
485 1081.65 470.4 1069.87 484.36 1050 477 1042.71 474.3 1042.02 471.34 1035 468 1025.61 463.53 1021.21 466.4 1013 460 967.34 424.42 \
935.6 361.19 922.59 331.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 924.91 331.01 919.89 325.55 920.41 332.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1083.5 470.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="1083.5,472.5",
		pos="e,919.29,324.16 1111.4,628.79 1108.4,618.8 1104,601.34 1104,586 1104,586 1104,586 1104,516.5 1104,502.16 1107.4,494.88 1097,485 \
1081.6,470.4 1069.9,484.36 1050,477 1042.7,474.3 1042,471.34 1035,468 1025.6,463.53 1021.2,466.4 1013,460 967.34,424.42 935.6,361.19 \
922.59,331.81"];
	extract_basename_2 -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 10 1173.33 634.31 1236.36 629.78 1327 617.75 1327 586 1327 586 1327 586 1327 179 1327 165.88 1337.08 155.75 1348 \
148.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1349.11 150.82 1353.9 145.15 1346.62 146.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1372.5 380.6 0 91 20 -output_file_basename ",
		label=output_file_basename,
		lp="1372.5,382.5",
		pos="e,1355.2,144.39 1173.3,634.31 1236.4,629.78 1327,617.75 1327,586 1327,586 1327,586 1327,179 1327,165.88 1337.1,155.75 1348,148.63"];
	"filter-unmapped"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1014.5 440.5 1014.5 459.5 1109.5 459.5 1109.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1062 447.5 0 79 15 -filter-unmapped ",
		height=0.27778,
		label="filter-unmapped",
		pos="1062,450",
		rects="1014.5,440.5,1109.5,459.5",
		width=1.3194];
	extract_basename_2 -> "filter-unmapped"	[_draw_="c 7 -#000000 B 13 1116.89 628.81 1120.15 618.84 1125 601.4 1125 586 1125 586 1125 586 1125 494 1125 482.03 1126.33 476.6 1118 468 \
1116.52 466.47 1114.9 465.07 1113.18 463.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1114.66 461.83 1107.4 460.28 1112.11 466.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1158.5 538.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="1158.5,540",
		pos="e,1106.1,459.49 1116.9,628.81 1120.1,618.84 1125,601.4 1125,586 1125,586 1125,586 1125,494 1125,482.03 1126.3,476.6 1118,468 1116.5,\
466.47 1114.9,465.07 1113.2,463.8"];
	extract_basename_2 -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 10 1155.01 628.52 1176.74 621.37 1199 608.54 1199 586 1199 586 1199 586 1199 404 1199 393.86 1194.09 383.7 1188.91 \
375.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1191.16 374.74 1185.09 370.48 1187.18 377.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1247.5 493.1 0 97 22 -input_output_filenames ",
		label=input_output_filenames,
		lp="1247.5,495",
		pos="e,1184.2,369.25 1155,628.52 1176.7,621.37 1199,608.54 1199,586 1199,586 1199,586 1199,404 1199,393.86 1194.1,383.7 1188.9,375.8"];
	extract_basename_2 -> "bowtie-se"	[_draw_="c 7 -#000000 B 7 1079.98 628.54 1066.11 625.39 1049.87 622.08 1035 620 859.25 595.43 647.27 588.53 559.79 586.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 560.03 584.22 552.98 586.53 559.93 589.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 998.5 605.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="998.5,607.5",
		pos="e,551.47,586.49 1080,628.54 1066.1,625.39 1049.9,622.08 1035,620 859.25,595.43 647.27,588.53 559.79,586.66"];
	percent_mitochondrial_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1024 80.5 1024 99.5 1182 99.5 1182 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1103 87.5 0 142 27 -percent_mitochondrial_reads ",
		height=0.27778,
		label=percent_mitochondrial_reads,
		pos="1103,90",
		rects="1024,80.5,1182,99.5",
		width=2.1944];
	percent_mitochondrial_reads -> output_percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 1125.92 80.5 1143.79 73.88 1168.79 64.61 1188.37 57.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1189 59.73 1194.71 55 1187.3 55.14 ",
		pos="e,1196.1,54.478 1125.9,80.505 1143.8,73.879 1168.8,64.614 1188.4,57.353"];
	"filter-unmapped" -> filtered2sorted	[_draw_="c 7 -#000000 B 4 1062 440.71 1062 435.59 1062 428.85 1062 422.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1064.45 422.78 1062 415.78 1059.55 422.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1081 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="1081,427.5",
		pos="e,1062,414.27 1062,440.71 1062,435.59 1062,428.85 1062,422.67"];
	sam2bam -> sort_bams	[_draw_="c 7 -#000000 B 7 893.49 530.89 896.23 525.29 900.5 517.98 906 513 907.74 511.43 909.65 509.97 911.65 508.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 912.61 510.9 917.4 505.24 910.12 506.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 925 515.6 0 38 10 -input_file ",
		label=input_file,
		lp="925,517.5",
		pos="e,918.7,504.47 893.49,530.89 896.23,525.29 900.5,517.98 906,513 907.74,511.43 909.65,509.97 911.65,508.62"];
	execute_pcr_bottleneck_coef -> output_pbc_files	[_draw_="c 7 -#000000 B 13 1192.35 350.56 1203.63 343.1 1217 331.09 1217 316 1217 316 1217 316 1217 89 1217 43.08 1272.93 75.92 1317 63 1323.28 \
61.16 1329.95 59.08 1336.34 57.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1336.9 59.41 1342.8 54.91 1335.38 54.75 ",
		pos="e,1344.2,54.441 1192.4,350.56 1203.6,343.1 1217,331.09 1217,316 1217,316 1217,316 1217,89 1217,43.078 1272.9,75.919 1317,63 1323.3,\
61.159 1329.9,59.077 1336.3,57.018"];
	index_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 680.5 80.5 680.5 99.5 791.5 99.5 791.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 736 87.5 0 95 16 -index_dedup_bams ",
		height=0.27778,
		label=index_dedup_bams,
		pos="736,90",
		rects="680.5,80.5,791.5,99.5",
		width=1.5417];
	sort_dedup_bams -> index_dedup_bams	[_draw_="c 7 -#000000 B 4 740.04 125.71 739.44 120.59 738.66 113.85 737.94 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 740.38 107.44 737.14 100.77 735.51 108 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 757 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="757,112.5",
		pos="e,736.96,99.265 740.04,125.71 739.44,120.59 738.66,113.85 737.94,107.67"];
	mapped_filtered_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 795.5 80.5 795.5 99.5 956.5 99.5 956.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 876 87.5 0 145 27 -mapped_filtered_reads_count ",
		height=0.27778,
		label=mapped_filtered_reads_count,
		pos="876,90",
		rects="795.5,80.5,956.5,99.5",
		width=2.2361];
	sort_dedup_bams -> mapped_filtered_reads_count	[_draw_="c 7 -#000000 B 4 767.67 125.5 788.84 118.76 818.6 109.28 841.57 101.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 842.02 104.4 847.94 99.94 840.53 99.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 850 110.6 0 60 14 -input_bam_file ",
		label=input_bam_file,
		lp="850,112.5",
		pos="e,849.38,99.478 767.67,125.5 788.84,118.76 818.6,109.28 841.57,101.97"];
	index_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 982 170.5 982 189.5 1058 189.5 1058 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1020 177.5 0 60 10 -index_bams ",
		height=0.27778,
		label=index_bams,
		pos="1020,180",
		rects="982,170.5,1058,189.5",
		width=1.0556];
	bam_idxstats	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1013.5 125.5 1013.5 144.5 1096.5 144.5 1096.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1055 132.5 0 67 12 -bam_idxstats ",
		height=0.27778,
		label=bam_idxstats,
		pos="1055,135",
		rects="1013.5,125.5,1096.5,144.5",
		width=1.1528];
	index_bams -> bam_idxstats	[_draw_="c 7 -#000000 B 4 1026.75 170.71 1031.4 165 1037.7 157.26 1043.17 150.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1044.8 152.41 1047.32 145.44 1041 149.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1049.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1049.5,157.5",
		pos="e,1048.3,144.27 1026.7,170.71 1031.4,165 1037.7,157.26 1043.2,150.54"];
	index_dedup_bams -> output_data_sorted_dedup_bam_files	[_draw_="c 7 -#000000 B 4 713.48 80.5 695.99 73.91 671.57 64.7 652.36 57.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 653.31 55.19 645.89 55.01 651.58 59.77 ",
		pos="e,644.48,54.478 713.48,80.505 695.99,73.908 671.57,64.696 652.36,57.45"];
	mapped_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 204.5 80.5 204.5 99.5 325.5 99.5 325.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 265 87.5 0 105 18 -mapped_reads_count ",
		height=0.27778,
		label=mapped_reads_count,
		pos="265,90",
		rects="204.5,80.5,325.5,99.5",
		width=1.6806];
	mapped_reads_count -> output_read_count_mapped	[_draw_="c 7 -#000000 B 4 230.82 80.5 203.1 73.61 163.89 63.87 134.21 56.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 134.96 54.15 127.58 54.84 133.78 58.91 ",
		pos="e,126.11,54.478 230.82,80.505 203.1,73.614 163.89,63.869 134.21,56.491"];
	mapped_filtered_reads_count -> output_read_count_mapped_filtered	[_draw_="c 7 -#000000 B 4 865.33 80.5 857.86 74.56 847.72 66.48 839.13 59.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 840.83 57.86 833.83 55.42 837.78 61.7 ",
		pos="e,832.65,54.478 865.33,80.505 857.86,74.556 847.72,66.481 839.13,59.637"];
	filtered2sorted -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 10 1063.48 395.55 1065.54 383.1 1069 359.09 1069 338.5 1069 338.5 1069 338.5 1069 179 1069 153.75 1234.44 142.39 \
1322.02 138.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1322.12 140.59 1328.99 137.81 1321.89 135.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1103 268.1 0 68 17 -input_sorted_file ",
		label=input_sorted_file,
		lp="1103,270",
		pos="e,1330.5,137.74 1063.5,395.55 1065.5,383.1 1069,359.09 1069,338.5 1069,338.5 1069,338.5 1069,179 1069,153.75 1234.4,142.39 1322,\
138.14"];
	filtered2sorted -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 7 1065.62 395.62 1068.61 389.74 1073.43 382.2 1080 378 1083.33 375.87 1086.86 373.98 1090.51 372.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1091.21 374.67 1096.77 369.76 1089.36 370.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1112 380.6 0 64 15 -input_bam_files ",
		label=input_bam_files,
		lp="1112,382.5",
		pos="e,1098.2,369.19 1065.6,395.62 1068.6,389.74 1073.4,382.2 1080,378 1083.3,375.87 1086.9,373.98 1090.5,372.31"];
	index_filtered_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 952 350.5 952 369.5 1062 369.5 1062 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1007 357.5 0 94 18 -index_filtered_bam ",
		height=0.27778,
		label=index_filtered_bam,
		pos="1007,360",
		rects="952,350.5,1062,369.5",
		width=1.5278];
	filtered2sorted -> index_filtered_bam	[_draw_="c 7 -#000000 B 7 1035.6 395.66 1030.74 393.36 1025.95 390.5 1022 387 1018.76 384.13 1016.04 380.38 1013.85 376.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1016.12 375.69 1010.77 370.55 1011.74 377.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1041 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="1041,382.5",
		pos="e,1010.1,369.2 1035.6,395.66 1030.7,393.36 1026,390.5 1022,387 1018.8,384.13 1016,380.38 1013.8,376.63"];
	sort_bams -> "filter-unmapped"	[_draw_="c 7 -#000000 B 7 956.55 485.68 967.38 480.12 982.29 472.95 996 468 1002.4 465.69 1009.25 463.56 1016.03 461.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1016.36 464.09 1022.47 459.89 1015.07 459.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1015 470.6 0 38 10 -input_file ",
		label=input_file,
		lp="1015,472.5",
		pos="e,1023.9,459.49 956.55,485.68 967.38,480.12 982.29,472.95 996,468 1002.4,465.69 1009.3,463.56 1016,461.64"];
	sort_bams -> index_bams	[_draw_="c 7 -#000000 B 22 939.17 485.8 937.4 477.19 935 463.21 935 451 935 451 935 451 935 381.5 935 365.99 937.87 359.66 950 350 962.82 \
339.79 973.96 353.12 986 342 994.88 333.8 994 328.09 994 316 994 316 994 316 994 224 994 213.58 999.66 203.52 1005.7 195.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1007.53 197.39 1010.21 190.48 1003.8 194.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1011 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="1011,337.5",
		pos="e,1011.2,189.33 939.17,485.8 937.4,477.19 935,463.21 935,451 935,451 935,451 935,381.5 935,365.99 937.87,359.66 950,350 962.82,339.79 \
973.96,353.12 986,342 994.88,333.8 994,328.09 994,316 994,316 994,316 994,224 994,213.58 999.66,203.52 1005.7,195.76"];
	"bowtie-se" -> output_bowtie_log	[_draw_="c 7 -#000000 B 13 486.8 578.85 451.55 572.28 400 559.51 400 541 400 541 400 541 400 89 400 62.58 309.58 69.61 284 63 276.69 61.11 \
268.9 58.94 261.49 56.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 262.49 54.54 255.08 54.92 261.11 59.24 ",
		pos="e,253.63,54.494 486.8,578.85 451.55,572.28 400,559.51 400,541 400,541 400,541 400,89 400,62.583 309.58,69.608 284,63 276.69,61.111 \
268.9,58.941 261.49,56.796"];
	"bowtie-se" -> sam2bam	[_draw_="c 7 -#000000 B 4 551.27 580.26 618.84 572.43 775.03 554.33 849.32 545.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 849.36 548.18 856.03 544.94 848.8 543.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 756 560.6 0 38 10 -input_file ",
		label=input_file,
		lp="756,562.5",
		pos="e,857.54,544.76 551.27,580.26 618.84,572.43 775.03,554.33 849.32,545.71"];
	"bowtie-se" -> mapped_reads_count	[_draw_="c 7 -#000000 B 10 486.65 584.08 427.06 583.36 306 577.4 306 541 306 541 306 541 306 134 306 121.72 297.13 111.55 287.64 104.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 289.11 102.24 281.97 100.22 286.29 106.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 328.5 335.6 0 45 10 -bowtie_log ",
		label=bowtie_log,
		lp="328.5,337.5",
		pos="e,280.73,99.351 486.65,584.08 427.06,583.36 306,577.4 306,541 306,541 306,541 306,134 306,121.72 297.13,111.55 287.64,104.2"];
	percent_uniq_reads -> output_percentage_uniq_reads	[_draw_="c 7 -#000000 B 4 1499.35 80.71 1500.18 75.59 1501.28 68.85 1502.29 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1504.7 63.06 1503.41 55.76 1499.87 62.27 ",
		pos="e,1503.7,54.265 1499.3,80.709 1500.2,75.593 1501.3,68.848 1502.3,62.666"];
	index_filtered_bam -> mark_duplicates	[_draw_="c 7 -#000000 B 10 972.5 350.59 965.21 348.25 957.71 345.4 951 342 945.05 338.99 944.35 336.98 939 333 937.33 331.75 935.58 330.46 \
933.84 329.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 935.54 327.38 928.46 325.19 932.63 331.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 970 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="970,337.5",
		pos="e,927.24,324.29 972.5,350.59 965.21,348.25 957.71,345.4 951,342 945.05,338.99 944.35,336.98 939,333 937.33,331.75 935.58,330.46 \
933.84,329.17"];
	index_dups_marked_bams -> output_data_sorted_dups_marked_bam_files	[_draw_="c 7 -#000000 B 4 746.98 215.65 688.27 186.86 494.07 91.64 425.36 57.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 426.71 55.88 419.34 54.99 424.55 60.28 ",
		pos="e,417.98,54.329 746.98,215.65 688.27,186.86 494.07,91.637 425.36,57.943"];
	index_dups_marked_bams -> remove_duplicates	[_draw_="c 7 -#000000 B 4 763.04 215.71 762.44 210.59 761.66 203.85 760.94 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 763.38 197.44 760.14 190.77 758.51 198 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 780 200.6 0 38 10 -input_file ",
		label=input_file,
		lp="780,202.5",
		pos="e,759.96,189.27 763.04,215.71 762.44,210.59 761.66,203.85 760.94,197.67"];
	bam_idxstats -> percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 1064.25 125.71 1070.9 119.76 1079.99 111.61 1087.71 104.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1089.07 106.77 1092.65 100.28 1085.8 103.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1099.5 110.6 0 33 8 -idxstats ",
		label=idxstats,
		lp="1099.5,112.5",
		pos="e,1093.8,99.265 1064.3,125.71 1070.9,119.76 1080,111.61 1087.7,104.7"];
}