@prefix CommandLineBinding: .
@prefix xsd: .
@prefix DockerRequirement: .
@prefix Workflow: .
@prefix InlineJavascriptRequirement: .
@prefix sld: .
@prefix rdfs: .
@prefix CommandOutputBinding: .
@prefix ns1: .
@prefix InplaceUpdateRequirement: .
@prefix rdf: .
@prefix Dirent: .
@prefix cwl: .
@prefix ResourceRequirement: .
@prefix ExpressionTool: .
rdfs:comment "Input solset name" ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "--insolset"
] ;
sld:default "sol000" ;
sld:type xsd:string , sld:null .
cwl:outputBinding [ CommandOutputBinding:glob
"parset.config" ] ;
cwl:outputBinding [ CommandOutputBinding:glob
"parset.config" ] ;
cwl:outputBinding [ CommandOutputBinding:glob
"parset.config" ] ;
cwl:outputBinding [ CommandOutputBinding:glob
"parset.config" ] ;
sld:type cwl:File .
sld:default 1 ;
sld:type xsd:int , sld:null .
sld:default "1.5asec" .
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "ddecal.beammode=" ;
CommandLineBinding:separate false
] ;
sld:type xsd:string , sld:null .
rdfs:comment "removes all axes with the length of 1" ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "-q"
] ;
sld:default false ;
sld:type xsd:boolean .
rdfs:comment "Reference antenna for phases. By default None.\n" ;
sld:default "CS001HBA0" ;
sld:type xsd:string , sld:null .
cwl:outputBinding [ CommandOutputBinding:glob
"$(inputs.prefix)*.png" ] ;
cwl:outputBinding [ CommandOutputBinding:glob
"$(inputs.prefix)*.png" ] ;
cwl:outputBinding [ CommandOutputBinding:glob
"$(inputs.prefix)*.png" ] ;
cwl:outputBinding [ CommandOutputBinding:glob
"$(inputs.prefix)*.png" ] ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] .
sld:default 0 .
rdfs:comment "Output solset name" ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "--outsolset"
] ;
sld:default "sol000" ;
sld:type xsd:string , sld:null .
sld:type [ sld:items cwl:Directory ;
sld:type sld:array
] .
rdfs:comment "What storage manager to use." ;
cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ;
CommandLineBinding:separate false
] ;
sld:default "" ;
sld:type xsd:string , sld:null .
cwl:inputBinding [ CommandLineBinding:position 1 ;
CommandLineBinding:prefix "-padding"
] ;
sld:type xsd:float , sld:null .
rdfs:comment "verbose output" ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "-v"
] ;
sld:default true ;
sld:type xsd:boolean .
rdfs:comment "Use Log=’XYZ’ to set which axes to put in Log.\n" ;
sld:type xsd:string , sld:null .
sld:default 3 .
rdfs:comment "This must be a len=2 axis and the plot will have the differential value\n- e.g. ‘pol’ to plot XX-YY.\n" ;
sld:type xsd:string , sld:null .
rdfs:comment "Tables to “add” (e.g. ‘sol000/tec000’), it works only for tec and clock\n to be added to phases.\n" ;
sld:type xsd:string , sld:null .
cwl:inputBinding [ CommandLineBinding:position 1 ;
CommandLineBinding:prefix "-temp-dir" ;
CommandLineBinding:shellQuote false
] ;
sld:default false ;
sld:type xsd:boolean , xsd:string , sld:null .
sld:default "phase000" .
rdfs:comment "Tolerance at which the approximating first stage is considered to be converged and the second full-constraining stage is started." ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "ddecal.approxtolerance=" ;
CommandLineBinding:separate false
] ;
sld:type xsd:float , sld:null .
a cwl:ExpressionTool ;
rdfs:label "merge_array_files" ;
ns1:original_cwlVersion "v1.2" ;
ExpressionTool:expression "${\n var out_file = []\n for(var i=0; i ;
cwl:outputs ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ] .
sld:type xsd:string , sld:null .
cwl:source .
rdfs:comment "Filter these antenna string from the processing" ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "--filter"
] ;
sld:default "[CR]S*&" ;
sld:type xsd:string , sld:null .
rdfs:comment "Uses an approximation stage in which the phases are constrained with the piece-wise fitter, to solve local minima problems." ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "ddecal.approximatetec=True"
] ;
sld:default false ;
sld:type xsd:boolean , sld:null .
cwl:source .
cwl:inputBinding [ CommandLineBinding:position 1 ;
CommandLineBinding:prefix "-minuv-l" ;
CommandLineBinding:shellQuote false
] ;
sld:default false ;
sld:type xsd:boolean , xsd:int , sld:null .
cwl:outputBinding [ CommandOutputBinding:glob
"h5parm_collector_output*.log" ] ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] .
sld:default 8e-01 .
sld:default "target" .
cwl:outputBinding [ CommandOutputBinding:glob
"wsclean*.log" ] ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] .
cwl:source ;
cwl:valueFrom "$(\"ph_\"+self+\"_\")" .
sld:default true .
sld:type sld:null ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] .
sld:default "briggs -1.5" .
rdfs:comment "Prefix to add before the self-generated filename.\n" ;
sld:default "losoto.plot." ;
sld:type xsd:string , sld:null .
cwl:inputBinding [ CommandLineBinding:position 1 ;
CommandLineBinding:prefix "-nmiter" ;
CommandLineBinding:shellQuote false
] ;
sld:default false ;
sld:type xsd:boolean , xsd:int , sld:null .
sld:default true .
cwl:source .
rdfs:comment "Define output file name for JSON statistics" ;
cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ;
CommandLineBinding:separate false
] ;
sld:default "out.json" ;
sld:type xsd:string , sld:null .
cwl:source .
cwl:source .
rdfs:comment "Number of cpus, by default all available." ;
sld:type xsd:int , sld:null .
rdfs:comment "Keep history of the export soltabs" ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "-H"
] ;
sld:default false ;
sld:type xsd:boolean .
rdfs:comment "A list of lists specifying groups of antennas that are to be constrained to have the same solution." ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "ddecal.antennaconstraint=" ;
CommandLineBinding:separate false ;
cwl:valueFrom "[$(self.join(','))]"
] ;
sld:type sld:null ;
sld:type [ sld:items xsd:string ;
sld:type sld:array
] .
cwl:source .
cwl:outputBinding [ CommandOutputBinding:glob
"$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ;
sld:type sld:null ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] .
rdfs:comment "Flag only the unconverged solutions for which divergence was detected.\nAt the moment, this option is effective only for rotation+diagonal\nsolves, where divergence is detected when the amplitudes of any station\nare found to be more than a factor of 5 from the mean amplitude over all\nstations.\nIf divergence for any one station is detected, all stations are flagged\nfor that solution interval. Only effective when flagunconverged=true\nand mode=rotation+diagonal.\n" ;
cwl:inputBinding [ CommandLineBinding:prefix
"ddecal.flagdivergedonly=True" ] ;
sld:default true ;
sld:type xsd:boolean , sld:null .
rdfs:label "h5parm_collector_gsm" ;
cwl:in , , , ;
cwl:out , ;
cwl:run .
cwl:in , , , , , , , , , , , , , , , , ;
cwl:out , , ;
cwl:run .
cwl:source ;
cwl:valueFrom "$(self == \"phase\" ? \"phaseonly\" : self)" .
sld:default "array_factor" .
rdfs:comment "overwrite output" ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "-c"
] ;
sld:default true ;
sld:type xsd:boolean .
sld:default "self_calibrate_target" .
rdfs:comment "An optional reference frequency (in Hz) for the smoothness constraint" ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ;
CommandLineBinding:separate false
] ;
sld:default 0e+00 ;
sld:type xsd:float , sld:null .
rdfs:comment "the axis to plot on a page - e.g. ant to get all antenna’s on one file.\n" ;
sld:type xsd:string , sld:null .
cwl:inputBinding [ CommandLineBinding:position 1 ;
CommandLineBinding:prefix "-save-source-list" ;
CommandLineBinding:shellQuote false
] ;
sld:default false ;
sld:type xsd:boolean , sld:null .
cwl:outputBinding [ CommandOutputBinding:glob
"applycal_$(inputs.correction)*.log" ] ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] .
sld:default "pol" .
sld:default "log" ;
sld:type xsd:string , sld:null .
sld:default "pol" .
cwl:format ;
sld:type cwl:File .
a cwl:CommandLineTool ;
ns1:original_cwlVersion "v1.2" ;
cwl:arguments ( "steps=[applycal, count]" "msout=." ) ;
cwl:baseCommand ( "DP3" ) ;
cwl:cwlVersion cwl:v1.2 ;
cwl:hints [ a cwl:DockerRequirement ;
DockerRequirement:dockerPull "astronrd/linc"
] ;
cwl:inputs , , , , , , , , , , , ;
cwl:outputs , ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ] ;
cwl:requirements [ a cwl:InplaceUpdateRequirement ;
InplaceUpdateRequirement:inplaceUpdate
true
] ;
cwl:requirements [ a cwl:InitialWorkDirRequirement ;
cwl:listing [ Dirent:writable true ;
cwl:entry "$(inputs.msin)"
]
] ;
cwl:requirements [ a cwl:ResourceRequirement ;
ResourceRequirement:coresMin "$(inputs.max_dp3_threads)"
] ;
cwl:stderr "applycal_$(inputs.correction)_err.log" ;
cwl:stdout "applycal_$(inputs.correction).log" .
rdfs:label "concat_logfiles_self_calibrate" ;
cwl:in , ;
cwl:out ;
cwl:run .
cwl:linkMerge "merge_flattened" ;
cwl:source , , , , , , .
cwl:outputBinding [ CommandOutputBinding:glob
"$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ;
sld:type sld:null ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] .
sld:default true .
rdfs:comment "Make a plot containing antenna coordinates in x,y and in color the value\n to plot, axesInPlot must be [ant].\n" ;
sld:default false ;
sld:type xsd:boolean , sld:null .
a cwl:CommandLineTool ;
rdfs:comment "This operation for LoSoTo implements basic plotting WEIGHT:\n flag-only compliant, no need for weight\n" ;
ns1:original_cwlVersion "v1.2" ;
cwl:arguments ( "run_losoto_plot.sh" ) ;
cwl:arguments ( "run_losoto_plot.sh" ) ;
cwl:arguments ( "run_losoto_plot.sh" ) ;
cwl:arguments ( "run_losoto_plot.sh" ) ;
cwl:baseCommand ( "bash" ) ;
cwl:baseCommand ( "bash" ) ;
cwl:baseCommand ( "bash" ) ;
cwl:baseCommand ( "bash" ) ;
cwl:cwlVersion cwl:v1.2 ;
cwl:hints [ a cwl:DockerRequirement ;
DockerRequirement:dockerPull "astronrd/linc"
] ;
cwl:hints [ a cwl:DockerRequirement ;
DockerRequirement:dockerPull "astronrd/linc"
] ;
cwl:hints [ a cwl:DockerRequirement ;
DockerRequirement:dockerPull "astronrd/linc"
] ;
cwl:hints [ a cwl:DockerRequirement ;
DockerRequirement:dockerPull "astronrd/linc"
] ;
cwl:inputs , , , , , , , , , , , , , , , , , , , , , , ;
cwl:outputs , , ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ;
InlineJavascriptRequirement:expressionLib
"function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}"
] ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ;
InlineJavascriptRequirement:expressionLib
"function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}"
] ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ;
InlineJavascriptRequirement:expressionLib
"function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}"
] ;
cwl:requirements [ a cwl:InitialWorkDirRequirement ;
cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ;
cwl:entryname "parset.config"
] ;
cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ;
cwl:entryname "run_losoto_plot.sh"
] ;
cwl:listing [ Dirent:writable true ;
cwl:entry "$(inputs.input_h5parm)" ;
cwl:entryname "$(inputs.input_h5parm.basename)"
]
] ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ;
InlineJavascriptRequirement:expressionLib
"function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}"
] ;
cwl:requirements [ a cwl:InitialWorkDirRequirement ;
cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ;
cwl:entryname "parset.config"
] ;
cwl:listing [ Dirent:writable true ;
cwl:entry "$(inputs.input_h5parm)" ;
cwl:entryname "$(inputs.input_h5parm.basename)"
] ;
cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ;
cwl:entryname "run_losoto_plot.sh"
]
] ;
cwl:requirements [ a cwl:InitialWorkDirRequirement ;
cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ;
cwl:entryname "parset.config"
] ;
cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ;
cwl:entryname "run_losoto_plot.sh"
] ;
cwl:listing [ Dirent:writable true ;
cwl:entry "$(inputs.input_h5parm)" ;
cwl:entryname "$(inputs.input_h5parm.basename)"
]
] ;
cwl:requirements [ a cwl:InitialWorkDirRequirement ;
cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ;
cwl:entryname "run_losoto_plot.sh"
] ;
cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ;
cwl:entryname "parset.config"
] ;
cwl:listing [ Dirent:writable true ;
cwl:entry "$(inputs.input_h5parm)" ;
cwl:entryname "$(inputs.input_h5parm.basename)"
]
] ;
cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ;
cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" .
sld:default true ;
sld:type xsd:boolean , sld:null .
cwl:source , ;
cwl:valueFrom "$(self.join(''))" .
cwl:inputBinding [ CommandLineBinding:position 1 ;
CommandLineBinding:prefix "-beam-size" ;
CommandLineBinding:shellQuote false
] ;
sld:default false ;
sld:type xsd:boolean , xsd:float , sld:null .
a cwl:Workflow ;
rdfs:label "selfcal_target" ;
ns1:original_cwlVersion "v1.2" ;
Workflow:steps , , , , , , , , , , , , , , ;
cwl:cwlVersion cwl:v1.2 ;
cwl:inputs , , , , , , , , , , , , , , ;
cwl:outputs , , , , , ;
cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] ;
cwl:requirements [ a cwl:ScatterFeatureRequirement ] .
cwl:source .
a cwl:CommandLineTool ;
rdfs:label "h5parm_cat" ;
ns1:original_cwlVersion "v1.2" ;
cwl:arguments ( [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "-o" ;
cwl:valueFrom "$(inputs.input_file.basename)"
]
) ;
cwl:baseCommand ( "H5parm_collector.py" ) ;
cwl:cwlVersion cwl:v1.2 ;
cwl:hints [ a cwl:DockerRequirement ;
DockerRequirement:dockerPull "astronrd/linc"
] ;
cwl:inputs , , , , , , , , ;
cwl:outputs , ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ] ;
cwl:requirements [ a cwl:InitialWorkDirRequirement ;
cwl:listing [ Dirent:writable true ;
cwl:entry "$(inputs.input_file)"
]
] ;
cwl:stderr "h5parm_collector_output_err.log" ;
cwl:stdout "h5parm_collector_output.log" .
rdfs:comment "Use model data from the measurement set." ;
cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ;
CommandLineBinding:separate false ;
CommandLineBinding:shellQuote false ;
cwl:valueFrom "[$(self.join(','))]"
] ;
sld:type sld:null ;
sld:type [ sld:items xsd:string ;
sld:type sld:array
] .
cwl:outputBinding [ CommandOutputBinding:glob
"add_missing_stations*.log" ] ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] .
cwl:linkMerge "merge_flattened" ;
cwl:source .
sld:default "time" , "freq" .
rdfs:comment "Output logfile" ;
cwl:outputBinding [ CommandOutputBinding:glob
"ddecal*.log" ] ;
sld:type [ sld:items cwl:File ;
sld:type sld:array
] .
rdfs:comment "Kernel size in Hz" ;
cwl:inputBinding [ CommandLineBinding:position 0 ;
CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ;
CommandLineBinding:separate false
] ;
sld:default 0e+00 ;
sld:type xsd:float , sld:null .
sld:default "/tmp" ;
sld:type xsd:string , sld:null .
cwl:inputBinding [ CommandLineBinding:position 1 ;
CommandLineBinding:prefix "-scale" ;
CommandLineBinding:shellQuote false
] ;
sld:default "36asec" ;
sld:type xsd:string , sld:null .
sld:default true .
cwl:source .
rdfs:comment "1- or 2-element array which says the coordinates to plot (2 for 3D plots).\n" ;
sld:type sld:null ;
sld:type [ sld:items xsd:string ;
sld:type sld:array
] ;
sld:type [ sld:items xsd:string ;
sld:type sld:array
] ;
sld:type [ sld:items xsd:string ;
sld:type sld:array
] ;
sld:type [ sld:items xsd:string ;
sld:type sld:array
] .
a cwl:CommandLineTool ;
rdfs:label "add_missing_stations" ;
ns1:original_cwlVersion "v1.2" ;
cwl:baseCommand ( "add_missing_stations.py" ) ;
cwl:cwlVersion cwl:v1.2 ;
cwl:hints [ a cwl:DockerRequirement ;
DockerRequirement:dockerPull "astronrd/linc"
] ;
cwl:inputs , , , , , , , ;
cwl:outputs , ;
cwl:requirements [ a cwl:InlineJavascriptRequirement ] ;
cwl:requirements [ a cwl:InitialWorkDirRequirement ;
cwl:listing [ Dirent:writable true ;
cwl:entry "$(inputs.h5parm)"
]
] ;
cwl:stderr "add_missing_stations_err.log" ;
cwl:stdout "add_missing_stations.log" .
cwl:source .
sld:default "time" , "freq" .
cwl:source .
sld:default true .
sld:default true .