{"@id":"https://w3id.org/cwl/view/git/192b813eed8c0d368e69057cb39415175dd15128/pgap.cwl","retrievedFrom":{"repoUrl":"https://github.com/ncbi/pgap.git","branch":"192b813eed8c0d368e69057cb39415175dd15128","path":"pgap.cwl","packedId":null,"type":"GITHUB","rawUrl":"https://raw.githubusercontent.com/ncbi/pgap/192b813eed8c0d368e69057cb39415175dd15128/pgap.cwl","url":"https://github.com/ncbi/pgap/blob/192b813eed8c0d368e69057cb39415175dd15128/pgap.cwl"},"retrievedOn":"2026-09-20T23:52:04.574+00:00","lastCommit":"192b813eed8c0d368e69057cb39415175dd15128","label":"PGAP Pipeline, simple user input, PGAPX-134","doc":"PGAP pipeline for external usage, powered via containers,\nsimple user input:  (FASTA + yaml only, no template)\n","inputs":{"fasta":{"type":"File"},"submol":{"type":"File"},"uuid_in":{"type":"File (Optional)"},"make_uuid":{"type":"Boolean (Optional)"},"no_internet":{"type":"Boolean (Optional)"},"report_usage":{"type":"Boolean"},"ignore_all_errors":{"type":"Boolean 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