digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 884 233 884 0 ",
		bb="0,0,884,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 182 170 182 225 876 225 876 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 232 213 0 84 15 -Workflow Inputs ",
			bb="182,170,876,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="232,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 366.5 178.5 366.5 197.5 439.5 197.5 439.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 403 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="403,188",
			rects="366.5,178.5,439.5,197.5",
			width=1.0139];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 190.5 178.5 190.5 197.5 247.5 197.5 247.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 219 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=diagram,
			pos="219,188",
			rects="190.5,178.5,247.5,197.5",
			width=0.79167];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 670.5 178.5 670.5 197.5 763.5 197.5 763.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 717 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=male_reference,
			pos="717,188",
			rects="670.5,178.5,763.5,197.5",
			width=1.2917];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 522 178.5 522 197.5 608 197.5 608 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 565 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="565,188",
			rects="522,178.5,608,197.5",
			width=1.1944];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 251.5 178.5 251.5 197.5 362.5 197.5 362.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 307 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=drop_low_coverage,
			pos="307,188",
			rects="251.5,178.5,362.5,197.5",
			width=1.5417];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 444 178.5 444 197.5 518 197.5 518 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 481 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_plot,
			pos="481,188",
			rects="444,178.5,518,197.5",
			width=1.0278];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 768 178.5 768 197.5 868 197.5 868 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 818 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="818,188",
			rects="768,178.5,868,197.5",
			width=1.3889];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 612 178.5 612 197.5 666 197.5 666 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 639 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="639,188",
			rects="612,178.5,666,197.5",
			width=0.75];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 829 63 829 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,829,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 373.5 35.5 373.5 54.5 522.5 54.5 522.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 448 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="448,45",
			rects="373.5,35.5,522.5,54.5",
			width=2.0694];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 147.5 54.5 147.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 82 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="82,45",
			rects="16.5,35.5,147.5,54.5",
			width=1.8194];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 621.5 35.5 621.5 54.5 688.5 54.5 688.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 655 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="655,45",
			rects="621.5,35.5,688.5,54.5",
			width=0.93056];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 693 35.5 693 54.5 821 54.5 821 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 757 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="757,45",
			rects="693,35.5,821,54.5",
			width=1.7778];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 295 35.5 295 54.5 369 54.5 369 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 332 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="332,45",
			rects="295,35.5,369,54.5",
			width=1.0278];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 151.5 35.5 151.5 54.5 290.5 54.5 290.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 221 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="221,45",
			rects="151.5,35.5,290.5,54.5",
			width=1.9306];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 526.5 35.5 526.5 54.5 617.5 54.5 617.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 572 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="572,45",
			rects="526.5,35.5,617.5,54.5",
			width=1.2639];
	}
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 408.5 125.5 408.5 144.5 485.5 144.5 485.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 447 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="447,135",
		rects="408.5,125.5,485.5,144.5",
		width=1.0694];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 7 403.9 178.58 405.09 171.11 407.82 160.28 414 153 415.19 151.6 416.52 150.31 417.94 149.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 419.08 151.3 423.43 145.3 416.28 147.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 437 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="437,157.5",
		pos="e,424.68,144.44 403.9,178.58 405.09,171.11 407.82,160.28 414,153 415.19,151.6 416.52,150.31 417.94,149.11"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 231.13 178.72 243.56 170.68 263.74 158.87 283 153 321.49 141.27 367.17 137.3 400.53 136.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 400.3 138.56 407.22 135.89 400.15 133.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 300 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="300,157.5",
		pos="e,408.73,135.85 231.13,178.72 243.56,170.68 263.74,158.87 283,153 321.49,141.27 367.17,137.3 400.53,136.1"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 7 702.12 178.54 687.18 170.49 663.25 158.78 641 153 591.76 140.22 533.39 136.59 493.63 135.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 493.74 133.32 486.7 135.65 493.66 138.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 698 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="698,157.5",
		pos="e,485.18,135.63 702.12,178.54 687.18,170.49 663.25,158.78 641,153 591.76,140.22 533.39,136.59 493.63,135.77"];
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 454.5 80.5 454.5 99.5 749.5 99.5 749.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 602 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="602,90",
		rects="454.5,80.5,749.5,99.5",
		width=4.0972];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 724.83 178.51 730.41 171.39 736.1 161.11 731 153 714.08 126.1 681.88 110.61 653.88 101.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 654.59 99.49 647.18 99.85 653.2 104.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 756 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="756,135",
		pos="e,645.73,99.426 724.83,178.51 730.41,171.39 736.1,161.11 731,153 714.08,126.1 681.88,110.61 653.88,101.83"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 7 555.15 178.53 545.7 170.82 530.72 159.65 516 153 508.98 149.83 501.28 147.2 493.65 145.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 494.29 142.66 486.9 143.23 493.04 147.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 560.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="560.5,157.5",
		pos="e,485.44,142.85 555.15,178.53 545.7,170.82 530.72,159.65 516,153 508.98,149.83 501.28,147.2 493.65,145.02"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 309.84 178.51 312.98 170.55 318.83 159 328 153 339.8 145.27 372.31 140.97 400.37 138.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 400.23 141.09 407.02 138.1 399.85 136.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 367.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="367.5,157.5",
		pos="e,408.53,137.99 309.84,178.51 312.98,170.55 318.83,159 328,153 339.8,145.27 372.31,140.97 400.37,138.62"];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 476.58 178.67 472.74 171.64 466.89 161.42 461 153 460.56 152.37 460.1 151.73 459.63 151.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 461.58 149.62 455.33 145.63 457.73 152.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 490.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="490.5,157.5",
		pos="e,454.39,144.44 476.58,178.67 472.74,171.64 466.89,161.42 461,153 460.56,152.37 460.1,151.73 459.63,151.1"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 816.61 178.65 813.88 165.11 806.51 138.49 789 125 774.48 113.81 737.35 105.93 699.96 100.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 700.75 98.23 693.48 99.7 700.08 103.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 831.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="831.5,135",
		pos="e,691.98,99.493 816.61,178.65 813.88,165.11 806.51,138.49 789,125 774.48,113.81 737.35,105.93 699.96,100.59"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 630.25 178.71 621.19 170.68 606.25 158.86 591 153 559.88 141.04 522.42 136.91 493.51 135.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 493.81 133.26 486.73 135.47 493.64 138.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 624 155.6 0 32 6 -method ",
		label=method,
		lp="624,157.5",
		pos="e,485.22,135.42 630.25,178.71 621.19,170.68 606.25,158.86 591,153 559.88,141.04 522.42,136.91 493.51,135.7"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 10 444.66 125.77 443.98 123 443.34 119.89 443 117 440.64 96.69 440.99 91.34 443 71 443.27 68.27 443.7 65.39 444.2 \
62.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 446.6 63.1 445.61 55.75 441.8 62.12 ",
		pos="e,445.92,54.271 444.66,125.77 443.98,123 443.34,119.89 443,117 440.64,96.692 440.99,91.345 443,71 443.27,68.269 443.7,65.395 444.2,\
62.606"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 7 412.03 125.61 356.79 112.35 245.96 85.72 152 63 143.25 60.88 133.89 58.62 124.95 56.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 125.74 54.12 118.36 54.85 124.59 58.88 ",
		pos="e,116.89,54.488 412.03,125.61 356.79,112.35 245.96,85.716 152,63 143.25,60.885 133.89,58.616 124.95,56.446"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 7 485.49 132.3 562.86 128.51 731.46 118.23 750 100 759.67 90.49 760.7 74.69 759.74 62.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 762.19 62.45 758.91 55.8 757.32 63.05 ",
		pos="e,758.72,54.298 485.49,132.3 562.86,128.51 731.46,118.23 750,100 759.67,90.494 760.7,74.688 759.74,62.626"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 4 435.97 125.56 415.92 110.21 373.32 77.62 349.34 59.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 351.08 57.51 344.03 55.2 348.1 61.4 ",
		pos="e,342.83,54.284 435.97,125.56 415.92,110.21 373.32,77.622 349.34,59.271"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 425.33 125.56 384.58 109.69 296.5 75.4 250.43 57.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.43 55.22 244.01 54.96 249.65 59.78 ",
		pos="e,242.6,54.412 425.33,125.56 384.58,109.69 296.5,75.397 250.43,57.459"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 10 445.43 125.51 443.78 113.75 442.79 92.55 454 80 475.04 56.45 492.71 71.96 523 63 528.94 61.24 535.22 59.2 541.23 \
57.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 541.96 59.5 547.78 54.89 540.36 54.87 ",
		pos="e,549.21,54.398 445.43,125.51 443.78,113.75 442.79,92.55 454,80 475.04,56.445 492.71,71.963 523,63 528.94,61.243 535.22,59.204 541.23,\
57.16"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 466.34 125.58 479.78 119.98 498.23 112.8 515 108 523.93 105.44 533.48 103.15 542.86 101.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 543.21 103.56 549.56 99.74 542.21 98.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 530.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="530.5,112.5",
		pos="e,551.04,99.431 466.34,125.58 479.78,119.98 498.23,112.8 515,108 523.93,105.44 533.48,103.15 542.86,101.13"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 485.34 129.36 503.11 126.67 524.38 122.66 543 117 554.86 113.39 567.5 108.04 578.03 103.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 579 105.38 584.26 100.15 576.88 100.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 581 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="581,112.5",
		pos="e,585.62,99.492 485.34,129.36 503.11,126.67 524.38,122.66 543,117 554.86,113.39 567.5,108.04 578.03,103.13"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 4 612.47 80.5 619.73 74.62 629.56 66.64 637.94 59.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 639.48 61.74 643.38 55.43 636.4 57.94 ",
		pos="e,644.55,54.478 612.47,80.505 619.73,74.615 629.56,66.64 637.94,59.841"];
}