digraph workflow {
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			fillcolor="#94DDF4",
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 304 320.5 0 70 11 -sample_name ",
			fillcolor="#94DDF4",
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			label=sample_name,
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			rects="261,313.5,347,332.5",
			width=1.1944];
		trimming_max_uncalled	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 698.5 313.5 698.5 332.5 833.5 332.5 833.5 313.5 ",
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			fillcolor="#94DDF4",
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			pos="185,323",
			rects="113.5,313.5,256.5,332.5",
			width=1.9861];
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	subgraph cluster_outputs {
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			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 330 15 0 92 16 -Workflow Outputs ",
			bb="276,8,503,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="330,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		cpg_bedgraph	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 284.5 35.5 284.5 54.5 369.5 54.5 369.5 35.5 ",
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			fillcolor="#94DDF4",
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			label=cpg_bedgraph,
			pos="327,45",
			rects="284.5,35.5,369.5,54.5",
			width=1.1806];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 453.5 35.5 453.5 54.5 494.5 54.5 494.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 474 42.5 0 25 4 -cram ",
			fillcolor="#94DDF4",
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			label=cram,
			pos="474,45",
			rects="453.5,35.5,494.5,54.5",
			width=0.56944];
		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 373.5 35.5 373.5 54.5 412.5 54.5 412.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 393 42.5 0 23 4 -cpgs ",
			fillcolor="#94DDF4",
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			label=cpgs,
			pos="393,45",
			rects="373.5,35.5,412.5,54.5",
			width=0.54167];
		vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 417 35.5 417 54.5 449 54.5 449 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 433 42.5 0 16 3 -vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=vcf,
			pos="433,45",
			rects="417,35.5,449,54.5",
			width=0.44444];
	}
	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 529.5 260.5 529.5 279.5 772.5 279.5 772.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 651 267.5 0 227 44 -bam to trimmed fastqs and biscuit alignments ",
		fillcolor="#F3CEA1",
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		label="bam to trimmed fastqs and biscuit alignments",
		pos="651,270",
		rects="529.5,260.5,772.5,279.5",
		width=3.375];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 877.18 313.56 853.69 305.86 817.31 294.7 785 288 771.28 285.15 756.66 282.71 742.31 280.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 742.67 278.21 735.4 279.67 741.99 283.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 829.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="829.5,292.5",
		pos="e,733.9,279.46 877.18,313.56 853.69,305.86 817.31,294.7 785,288 771.28,285.15 756.66,282.71 742.31,280.64"];
	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 177 80.5 177 99.5 345 99.5 345 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 261 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="261,90",
		rects="177,80.5,345,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 63 313.7 63 303.6 63 286.05 63 271 63 271 63 271 63 134 63 110.46 117.12 99.78 168.77 94.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 168.76 97.41 175.52 94.36 168.33 92.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 95.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="95.5,202.5",
		pos="e,177.03,94.223 63,313.7 63,303.6 63,286.05 63,271 63,271 63,271 63,134 63,110.46 117.12,99.781 168.77,94.949"];
	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 999.78 313.54 989.62 310.51 977.85 307.28 967 305 906.39 292.28 838.19 284.18 780.71 279.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 781 276.66 773.81 278.5 780.57 281.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 942.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="942.5,292.5",
		pos="e,772.3,278.37 999.78,313.54 989.62,310.51 977.85,307.28 967,305 906.39,292.28 838.19,284.18 780.71,279.09"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 1127.97 313.55 1113.15 310.69 1096.36 307.56 1081 305 1028.3 296.21 1015.17 293.24 962 288 902.5 282.14 836.39 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 780.91 273.12 773.81 275.24 780.69 278.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1074 290.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="1074,292.5",
		pos="e,772.3,275.17 1128,313.55 1113.2,310.69 1096.4,307.56 1081,305 1028.3,296.21 1015.2,293.24 962,288 902.5,282.14 836.39,278.17 780.47,\
275.55"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 537.29 313.51 547.16 305.78 562.76 294.59 578 288 583.5 285.62 589.39 283.55 595.34 281.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 595.94 284.12 602.01 279.86 594.61 279.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 614 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="614,292.5",
		pos="e,603.47,279.45 537.29,313.51 547.16,305.78 562.76,294.59 578,288 583.5,285.62 589.39,283.55 595.34,281.74"];
	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 361.5 170.5 361.5 189.5 444.5 189.5 444.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 403 177.5 0 67 14 -Biscuit pileup ",
		height=0.27778,
		label="Biscuit pileup",
		pos="403,180",
		rects="361.5,170.5,444.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 4 399.24 313.6 399.88 290.82 401.68 227.55 402.53 197.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 404.98 197.76 402.73 190.69 400.08 197.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 421 245.6 0 40 9 -reference ",
		label=reference,
		lp="421,247.5",
		pos="e,402.77,189.18 399.24,313.6 399.88,290.82 401.68,227.55 402.53,197.39"];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 418.25 313.59 437.16 305.7 467.02 294.2 494 288 506.72 285.08 520.15 282.65 533.57 280.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 533.84 283.08 540.42 279.66 533.14 278.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 527 290.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="527,292.5",
		pos="e,541.92,279.45 418.25,313.59 437.16,305.7 467.02,294.2 494,288 506.72,285.08 520.15,282.65 533.57,280.65"];
	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 70 125.5 70 144.5 452 144.5 452 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 261 132.5 0 366 77 -convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script ",
		height=0.27778,
		label="convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script",
		pos="261,135",
		rects="70,125.5,452,144.5",
		width=5.3056];
	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 13 375.29 313.53 366.74 310.63 356.99 307.49 348 305 313.12 295.34 274 307.19 274 271 274 271 274 271 274 179 274 \
169.84 271.26 160.03 268.3 152.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 270.61 151.28 265.69 145.74 266.08 153.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 294 223.1 0 40 9 -reference ",
		label=reference,
		lp="294,225",
		pos="e,265.11,144.34 375.29,313.53 366.74,310.63 356.99,307.49 348,305 313.12,295.34 274,307.19 274,271 274,271 274,271 274,179 274,169.84 \
271.26,160.03 268.3,152.09"];
	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 454 170.5 454 189.5 594 189.5 594 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 524 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="524,180",
		rects="454,170.5,594,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 10 404.9 313.71 413.81 300.93 430.84 275.43 442 252 452.94 229.03 442.35 215.31 461 198 462.79 196.34 464.73 194.84 \
466.77 193.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 467.84 195.68 472.76 190.13 465.46 191.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 465 245.6 0 40 9 -reference ",
		label=reference,
		lp="465,247.5",
		pos="e,474.08,189.39 404.9,313.71 413.81,300.93 430.84,275.43 442,252 452.94,229.03 442.35,215.31 461,198 462.79,196.34 464.73,194.84 \
466.77,193.48"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 651 313.58 651 306.52 651 296.24 651 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 653.45 287.78 651 280.78 648.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 680 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="680,292.5",
		pos="e,651,279.26 651,313.58 651,306.52 651,296.24 651,287.55"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 754.48 313.75 743.49 306.19 726.25 295.12 710 288 704.95 285.79 699.53 283.77 694.1 281.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 695.03 279.69 687.62 279.93 693.56 284.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 755.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="755.5,292.5",
		pos="e,686.17,279.48 754.48,313.75 743.49,306.19 726.25,295.12 710,288 704.95,285.79 699.53,283.77 694.1,281.97"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 219.29 313.59 232.29 310.59 247.28 307.37 261 305 347.1 290.1 445.08 281.59 521.3 276.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 521.19 279.27 528.03 276.4 520.89 274.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 410 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="410,292.5",
		pos="e,529.54,276.31 219.29,313.59 232.29,310.59 247.28,307.37 261,305 347.1,290.1 445.08,281.59 521.3,276.81"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 423.39 170.54 433.99 164.98 445.95 156.56 452 145 466.05 118.15 452.4 82.33 442.1 61.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 444.28 60.84 438.82 55.82 439.95 63.15 ",
		pos="e,438.11,54.484 423.39,170.54 433.99,164.98 445.95,156.56 452,145 466.05,118.15 452.4,82.334 442.1,61.961"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 374.95 170.5 352.58 163.73 321.11 154.2 296.9 146.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 297.85 144.6 290.44 144.92 296.43 149.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 350.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="350.5,157.5",
		pos="e,289,144.48 374.95,170.5 352.58,163.73 321.11,154.2 296.9,146.87"];
	bedgraph_to_bigwig -> cpg_bedgraph	[_draw_="c 7 -#000000 B 4 274.04 80.5 283.44 74.38 296.3 66 307 59.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 308.19 61.18 312.72 55.3 305.52 57.07 ",
		pos="e,313.99,54.478 274.04,80.505 283.44,74.38 296.3,65.999 307,59.031"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 466.5 80.5 466.5 99.5 585.5 99.5 585.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 526 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="526,90",
		rects="466.5,80.5,585.5,99.5",
		width=1.6528];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 515.73 80.5 508.6 74.62 498.96 66.64 490.74 59.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 492.37 58.02 485.42 55.44 489.25 61.79 ",
		pos="e,484.25,54.478 515.73,80.505 508.6,74.615 498.96,66.64 490.74,59.841"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 469 215.5 469 234.5 579 234.5 579 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 524 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="524,225",
		rects="469,215.5,579,234.5",
		width=1.5278];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 500.09 215.5 481.37 208.85 455.15 199.53 434.67 192.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 435.7 190.02 428.28 189.98 434.06 194.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 483.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="483.5,202.5",
		pos="e,426.86,189.48 500.09,215.5 481.37,208.85 455.15,199.53 434.67,192.26"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 524 215.71 524 210.59 524 203.85 524 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 526.45 197.78 524 190.78 521.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 533.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="533.5,202.5",
		pos="e,524,189.27 524,215.71 524,210.59 524,203.85 524,197.67"];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 625.91 260.5 606.17 253.82 578.49 244.45 556.96 237.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 557.89 234.89 550.47 234.96 556.32 239.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 609.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="609.5,247.5",
		pos="e,549.04,234.48 625.91,260.5 606.17,253.82 578.49,244.45 556.96,237.16"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 292.69 125.57 309.79 120.05 330.68 111.67 347 100 361.77 89.44 374.78 73.14 383.16 61.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 385 62.85 386.91 55.69 380.95 60.1 ",
		pos="e,387.76,54.433 292.69,125.57 309.79,120.05 330.68,111.67 347,100 361.77,89.439 374.78,73.137 383.16,61.206"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 261 125.71 261 120.59 261 113.85 261 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 263.45 107.78 261 100.78 258.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 281 110.6 0 40 8 -bedgraph ",
		label=bedgraph,
		lp="281,112.5",
		pos="e,261,99.265 261,125.71 261,120.59 261,113.85 261,107.67"];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 4 524.19 170.56 524.52 156.14 525.19 126.48 525.62 107.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 528.07 107.85 525.78 100.8 523.17 107.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 535.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="535.5,135",
		pos="e,525.81,99.284 524.19,170.56 524.52,156.14 525.19,126.48 525.62,107.73"];
}