digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 323 472 323 472 0 ",
		bb="0,0,472,323",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 90 260 90 315 408 315 408 260 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 140 303 0 84 15 -Workflow Inputs ",
			bb="90,260,408,315",
			label="Workflow Inputs",
			lheight=0.15,
			lp="140,305.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		model	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 214.5 268.5 214.5 287.5 399.5 287.5 399.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 307 275.5 0 169 33 -rRNA protein model to search with ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="rRNA protein model to search with",
			pos="307,278",
			rects="214.5,268.5,399.5,287.5",
			width=2.5694];
		indexed_sequences	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 98 268.5 98 287.5 210 287.5 210 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 154 275.5 0 96 17 -indexed_sequences ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=indexed_sequences,
			pos="154,278",
			rects="98,268.5,210,287.5",
			width=1.5556];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 152 8 152 63 420 63 420 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 206 15 0 92 16 -Workflow Outputs ",
			bb="152,8,420,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="206,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		matching_sequences	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 160.5 35.5 160.5 54.5 279.5 54.5 279.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 220 42.5 0 103 18 -matching_sequences ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=matching_sequences,
			pos="220,45",
			rects="160.5,35.5,279.5,54.5",
			width=1.6528];
		hmmer_search_results	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 284 35.5 284 54.5 412 54.5 412 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 348 42.5 0 112 20 -hmmer_search_results ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=hmmer_search_results,
			pos="348,45",
			rects="284,35.5,412,54.5",
			width=1.7778];
	}
	hmmsearch	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 186.5 215.5 186.5 234.5 427.5 234.5 427.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 307 222.5 0 225 45 -search profile(s) against a sequence database ",
		height=0.27778,
		label="search profile(s) against a sequence database",
		pos="307,225",
		rects="186.5,215.5,427.5,234.5",
		width=3.3472];
	model -> hmmsearch	[_draw_="c 7 -#000000 B 4 307 268.58 307 261.52 307 251.24 307 242.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 309.45 242.78 307 235.78 304.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 334.5 245.6 0 55 12 -hmm_profiles ",
		label=hmm_profiles,
		lp="334.5,247.5",
		pos="e,307,234.26 307,268.58 307,261.52 307,251.24 307,242.55"];
	indexed_sequences -> hmmsearch	[_draw_="c 7 -#000000 B 7 172.73 268.52 189.57 261.11 215.1 250.41 238 243 245.15 240.68 252.81 238.51 260.33 236.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 260.76 238.95 266.94 234.85 259.55 234.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 272 245.6 0 68 14 -sequence_query ",
		label=sequence_query,
		lp="272,247.5",
		pos="e,268.4,234.48 172.73,268.52 189.57,261.11 215.1,250.41 238,243 245.15,240.68 252.81,238.51 260.33,236.53"];
	fetch_aligned_sequences	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 54 80.5 54 99.5 306 99.5 306 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 180 87.5 0 236 46 -extract by names from an indexed sequence file ",
		height=0.27778,
		label="extract by names from an indexed sequence file",
		pos="180,90",
		rects="54,80.5,306,99.5",
		width=3.5];
	indexed_sequences -> fetch_aligned_sequences	[_draw_="c 7 -#000000 B 10 154 268.7 154 258.6 154 241.05 154 226 154 226 154 226 154 134 154 123.58 159.66 113.52 165.7 105.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 167.53 107.39 170.21 100.48 163.8 104.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 195 178.1 0 82 17 -indexed_sequences ",
		label=indexed_sequences,
		lp="195,180",
		pos="e,171.2,99.328 154,268.7 154,258.6 154,241.05 154,226 154,226 154,226 154,134 154,123.58 159.66,113.52 165.7,105.76"];
	extract_coord_lines	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 240 170.5 240 189.5 352 189.5 352 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 296 177.5 0 96 19 -extract_coord_lines ",
		height=0.27778,
		label=extract_coord_lines,
		pos="296,180",
		rects="240,170.5,352,189.5",
		width=1.5556];
	extract_coordinates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 181.5 125.5 181.5 144.5 294.5 144.5 294.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 238 132.5 0 97 19 -extract_coordinates ",
		height=0.27778,
		label=extract_coordinates,
		pos="238,135",
		rects="181.5,125.5,294.5,144.5",
		width=1.5694];
	extract_coord_lines -> extract_coordinates	[_draw_="c 7 -#000000 B 4 284.54 170.5 276.44 164.5 265.41 156.32 256.12 149.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 257.73 147.58 250.65 145.38 254.82 151.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 307 155.6 0 68 16 -coordinate_lines ",
		label=coordinate_lines,
		lp="307,157.5",
		pos="e,249.44,144.48 284.54,170.5 276.44,164.5 265.41,156.32 256.12,149.43"];
	extract_coordinates -> fetch_aligned_sequences	[_draw_="c 7 -#000000 B 4 226.54 125.5 218.44 119.5 207.41 111.32 198.12 104.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 199.73 102.58 192.65 100.38 196.82 106.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 229 110.6 0 28 5 -names ",
		label=names,
		lp="229,112.5",
		pos="e,191.44,99.478 226.54,125.5 218.44,119.5 207.41,111.32 198.12,104.43"];
	hmmsearch -> hmmer_search_results	[_draw_="c 7 -#000000 B 10 329.35 215.62 343.45 208.72 359 197.4 359 181 359 181 359 181 359 89 359 80.04 356.73 70.35 354.26 62.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 356.57 61.65 351.97 55.83 351.94 63.25 ",
		pos="e,351.48,54.404 329.35,215.62 343.45,208.72 359,197.4 359,181 359,181 359,181 359,89 359,80.042 356.73,70.353 354.26,62.444"];
	hmmsearch -> extract_coord_lines	[_draw_="c 7 -#000000 B 4 304.88 215.71 303.54 210.47 301.76 203.53 300.15 197.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 302.6 196.91 298.49 190.73 297.85 198.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 322 200.6 0 38 7 -summary ",
		label=summary,
		lp="322,202.5",
		pos="e,298.11,189.27 304.88,215.71 303.54,210.47 301.76,203.53 300.15,197.24"];
	fetch_aligned_sequences -> matching_sequences	[_draw_="c 7 -#000000 B 4 187.71 80.71 193.14 74.88 200.53 66.93 206.87 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 208.31 62.17 211.28 55.37 204.72 58.83 ",
		pos="e,212.31,54.265 187.71,80.709 193.14,74.879 200.53,66.934 206.87,60.117"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 416 268.5 416 287.5 472 287.5 472 268.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 444 275.5 0 40 8 -\"1.0E-5\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"1.0E-5\"",
		pos="444,278",
		rects="416,268.5,472,287.5",
		width=0.77778];
	default1 -> hmmsearch	[_draw_="c 7 -#000000 B 7 427.42 268.53 421.65 265.7 415.09 262.6 409 260 388.12 251.09 364.05 242.98 344.55 236.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 345.34 234.59 337.93 234.88 343.91 239.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 411.5 245.6 0 49 11 -e_threshold ",
		label=e_threshold,
		lp="411.5,247.5",
		pos="e,336.49,234.44 427.42,268.53 421.65,265.7 415.09,262.6 409,260 388.12,251.09 364.05,242.98 344.55,236.91"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 0 125.5 0 144.5 36 144.5 36 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 18 132.5 0 20 4 -true ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=true,
		pos="18,135",
		rects="0,125.5,36,144.5",
		width=0.5];
	default2 -> fetch_aligned_sequences	[_draw_="c 7 -#000000 B 7 16.87 125.54 16.61 119.78 17.38 112.42 22 108 25.01 105.13 35.37 102.66 49.46 100.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 49.54 103.04 56.15 99.66 48.88 98.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 86 110.6 0 128 27 -names_contain_subseq_coords ",
		label=names_contain_subseq_coords,
		lp="86,112.5",
		pos="e,57.646,99.454 16.872,125.54 16.614,119.78 17.377,112.42 22,108 25.008,105.13 35.373,102.66 49.46,100.57"];
}