@prefix CommandLineBinding: . @prefix xsd: . @prefix DockerRequirement: . @prefix Workflow: . @prefix InlineJavascriptRequirement: . @prefix sld: . @prefix rdfs: . @prefix CommandOutputBinding: . @prefix ns1: . @prefix InplaceUpdateRequirement: . @prefix rdf: . @prefix Dirent: . @prefix cwl: . @prefix ResourceRequirement: . @prefix ExpressionTool: . a cwl:CommandLineTool ; rdfs:label "h5parm_cat" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:arguments ( [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ; cwl:valueFrom "$(inputs.input_file.basename)" ] ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_file)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "h5parm_collector_output_err.log" ; cwl:stdout "h5parm_collector_output.log" . sld:type xsd:string , sld:null . sld:default 2 . cwl:outputSource ; sld:type cwl:File . sld:default true . cwl:source . rdfs:comment "Will skip an ms if it has already been processed by AOFlagger according\nto its HISTORY table.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-skip-flagged" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:boolean , sld:null . a cwl:Workflow ; rdfs:label "FR_targ" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , ; cwl:outputs , , , ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] ; cwl:requirements [ a cwl:MultipleInputFeatureRequirement ] . cwl:source ; cwl:valueFrom "$(self+\"amplitude\")" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:comment "Use Log=’XYZ’ to set which axes to put in Log.\n" ; sld:type xsd:string , sld:null . sld:type cwl:Directory , cwl:File . rdfs:comment "Antenna string to be processed" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--bad_antennas" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--bad_antennas" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--bad_antennas" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--bad_antennas" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--bad_antennas" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--bad_antennas" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--bad_antennas" ] ; sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . rdfs:comment "Input calibration solutions of the reference h5parm file" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refsolset" ] ; sld:default "sol000" ; sld:type xsd:string , sld:null . rdfs:label "concat_logfiles_predict" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . sld:default "selfcal_subtract_hires" . rdfs:comment "Output h5parm name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outh5parm" ] ; sld:default "output.h5" ; sld:type xsd:string . rdfs:comment "overrides the number of threads specified in the strategy\n(default: one thread for each CPU core)\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:int , sld:null . sld:default "target" . cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; cwl:outputBinding [ CommandOutputBinding:glob "parset.config" ] ; sld:type cwl:File . cwl:linkMerge "merge_flattened" ; cwl:source , , , , , , . sld:default "time" . cwl:source . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . cwl:outputSource ; sld:type cwl:File . rdfs:label "BLsmooth1" ; cwl:in , , , ; cwl:out , ; cwl:run . sld:default "MODEL_DATA" . cwl:outputSource ; cwl:pickValue "all_non_null" ; sld:type cwl:File . rdfs:comment "The axis to plot in different colours - e.g. pol to get correlations with\n different colors.\n" ; sld:type xsd:string , sld:null . rdfs:label "losoto_plot_ampSmooth" ; cwl:in , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . sld:default 6e-01 . sld:default 8e+04 . a cwl:CommandLineTool ; rdfs:label "WSClean" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:baseCommand ( "wsclean" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , , , , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_image)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_dirty)" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.fits_model)" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.reuse_psf)" ] ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:stderr "wsclean_err.log" ; cwl:stdout "wsclean.log" . rdfs:comment "Return the ratio instead of subtracting." ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "concat_logfiles_apply_targ1" ; cwl:in , ; cwl:out ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).filter_out)" ; cwl:loadContents true ] ; sld:type xsd:string . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . sld:default "diagonalphase" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-fit-beam" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-save-source-list" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "sol000" . rdfs:comment "Input measurement set" ; sld:type cwl:Directory . rdfs:label "losoto_plot_fr" ; cwl:in , , , , , ; cwl:out , , ; cwl:run . rdfs:comment "maximum amount of threads to be used for processing" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type sld:null , xsd:int . cwl:source . rdfs:label "concat_logfiles_calib_targ" ; cwl:in , ; cwl:out ; cwl:run . sld:default "sol000/phase000" . sld:default "sol000" . sld:default "array_factor" . rdfs:comment "List of h5parm files" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:File . sld:default true . sld:default "sol000/amplitude000" . sld:default "sol000/amplitude000" . rdfs:label "add_missing_stations2" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source , , ; cwl:valueFrom "$(\"slow\"+self.join(''))" . sld:default 30 . rdfs:comment "Reads uvw values (some exotic strategies require these)" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-uvw" ; CommandLineBinding:shellQuote false ] ; sld:type cwl:File , sld:null . sld:default true ; sld:type xsd:boolean , sld:null . rdfs:comment "Output MS" ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-scale" ; CommandLineBinding:shellQuote false ] ; sld:default "36asec" ; sld:type sld:null , xsd:string . cwl:source ; cwl:valueFrom "$(self+\"_hires\")" . cwl:outputSource ; sld:type cwl:File . rdfs:label "H5parm_collector_amp" ; cwl:in , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . rdfs:label "imaging_subtract" ; cwl:in , , , , , , , , , , , , ; cwl:out , , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "blank_image_reg*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "blank_image_reg*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "blank_image_reg*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:pickValue "all_non_null" ; cwl:source . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "Comma separated list of (zero-indexed) field ids to process" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "-fields" ; CommandLineBinding:shellQuote false ] ; sld:type sld:null ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . a cwl:CommandLineTool ; rdfs:comment "Faraday rotation extraction from either a rotation table or a\ncircular phase (of which the operation get the polarisation difference).\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('FARADAY').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . rdfs:label "apply_targ_amp_2" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run ; cwl:scatter ( ) . sld:default 1.8e+00 . sld:default 1e+02 . sld:default "pol" . rdfs:comment "Axis along which replicate the values." ; sld:type xsd:string . sld:default 5e-01 . sld:default "Dysco" . cwl:source ; cwl:valueFrom "$([self])" . sld:default "fr_ph_" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:label "concat_logfiles_BLsmooth_model" ; cwl:in , ; cwl:out ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-taper-gaussian" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:string , sld:null , xsd:boolean . sld:default 1e+02 . sld:type xsd:boolean , sld:null . sld:default 500 . sld:default 8e+04 . sld:default "/tmp" ; sld:type xsd:string , sld:null . sld:default "apply_targ" . cwl:source ; cwl:valueFrom "$(self+'000')" . cwl:source . rdfs:comment "Kernel size in Hz" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessconstraint=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type sld:null , xsd:float . rdfs:comment "If WEIGHT_SPECTRUM_ORIG exists then restore it before smoothing" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; sld:default false ; sld:type sld:null , xsd:boolean . sld:default true . cwl:source . rdfs:comment "Input data Column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "DATA" ; sld:type xsd:string , sld:null . cwl:source . rdfs:comment "overwrite output" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; sld:default false ; sld:type xsd:boolean . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[predict,count]" "msout=." ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:stderr "predict_cal_err.log" ; cwl:stdout "predict_cal.log" . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:outputSource ; sld:type cwl:Directory . cwl:source . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source , . sld:default "ph_poldif" . rdfs:comment "output mask" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.mask_name)" ] ; sld:type cwl:File . sld:default "10arcsec" . cwl:outputSource ; sld:type cwl:File . sld:default "CORRECTED_DATA" . cwl:source , ; cwl:valueFrom "$(\"apply_targ_\"+self.join(''))" . rdfs:label "concat_logfiles_apply_targ1" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "Gives an indication on how the smoothing varies with" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-s" ] ; sld:default 1e+00 ; sld:type xsd:float , sld:null . sld:default "fr_ph_res" . rdfs:label "concat_logfiles_subtract" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "Input measurement set" ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; sld:type cwl:Directory . rdfs:comment "If False then weights are untouched, if True they are replicated\nlike data. Default: True.\n" ; sld:type xsd:boolean , sld:null . rdfs:label "concat_logfiles_model" ; cwl:in , ; cwl:out ; cwl:run . rdfs:label "blank_image_reg_2" ; cwl:in , , , , ; cwl:out , ; cwl:run . cwl:source ; cwl:valueFrom "$(self.basename+\":CIRC_PHASEDIFF_DATA\")" . rdfs:comment "Output solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; sld:default "sol000" ; sld:type xsd:string , sld:null . sld:default 5 . cwl:source . cwl:source . sld:default "fr" . rdfs:comment "Controls the accuracy to be reached." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.tolerance=" ; CommandLineBinding:separate false ] ; sld:default 1e-03 ; sld:type sld:null , xsd:float . rdfs:comment "Output logfile" ; cwl:outputBinding [ CommandOutputBinding:glob "taql*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "time" , "ant" , "freq" . sld:default true . rdfs:label "concat_logfiles_large" ; cwl:in , ; cwl:out ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 1 ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:default 1e-03 . sld:default "faraday" ; sld:type xsd:string , sld:null . cwl:source . cwl:source . rdfs:label "write_solutions2" ; cwl:in , , , , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . cwl:source . sld:type xsd:int , sld:null . cwl:pickValue "first_non_null" ; cwl:source , . cwl:source . rdfs:comment "arrive to the first null, not the FWHM" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--tonull" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . rdfs:comment "An optional reference frequency (in Hz) for the smoothness constraint" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.smoothnessreffrequency=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type xsd:float , sld:null . cwl:source . sld:default true . sld:default "calib_targ_amp" . rdfs:label "add_corrected_col" ; cwl:in , ; cwl:out , ; cwl:run . sld:default 5e-01 . rdfs:comment "Input main task name" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "'" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "UPDATE" ; sld:type xsd:string , sld:null . rdfs:label "corrupt_tec" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . rdfs:comment "Will select either memory or direct mode based on available memory (default).\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-auto-read" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:boolean , sld:null . cwl:source . rdfs:comment "Whether to plot also flags as red points in 2D plots." ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(self+\"amplitude\")" . cwl:source . rdfs:comment "Choose correlation to be plotted (XX,YY,XY,YX)\n" ; sld:type xsd:string , sld:null . sld:default "target" . cwl:source . cwl:source . sld:default 50000 . sld:default 4500 . sld:default "/tmp" ; sld:type xsd:string , sld:null . sld:default "target" . a cwl:CommandLineTool ; rdfs:label "concatfiles" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:baseCommand ( "bash" "bulk_rename.sh" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , ; cwl:outputs ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "#!/bin/bash\nset -e\nFILE_LIST=(\"\\${@}\")\nFILE_PREFIX=$(inputs.file_prefix)\nFILE_SUFFIX=$(inputs.file_suffix === null ? '' : inputs.file_suffix)\ncat \"\\${FILE_LIST[@]}\" > $FILE_PREFIX.$FILE_SUFFIX\n" ; cwl:entryname "bulk_rename.sh" ] ] . sld:default "GSM" ; sld:type xsd:string , sld:null . rdfs:comment "List of h5parm files" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:File ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default 1e+03 . sld:default true . cwl:pickValue "all_non_null" ; cwl:source . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . rdfs:comment "Output solution table (has to be different from input solution table)" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_out" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_out" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_out" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_out" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_out" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_out" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_out" ] ; sld:default "GSMphase" ; sld:type sld:null , xsd:string . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scale-bias" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:float , sld:null . cwl:source . sld:default true . cwl:source . sld:default true . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:source . sld:default "MODEL_DATA" . sld:default "CS001HBA0" ; sld:type xsd:string , sld:null . cwl:source . a cwl:CommandLineTool ; rdfs:label "BLsmooth" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:baseCommand ( "BLsmooth.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:stderr "BLsmooth.log" . rdfs:comment "Make aoflagger reorder the measurement set before running the detection.\nThis prevents that aoflagger will use its memory reading mode, which is faster but uses more memory.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-reorder" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:boolean , sld:null . cwl:source . sld:default 8e+04 . sld:default "corrupt_model" . cwl:source ; cwl:valueFrom "$(Math.round(self/2.e6) > 0 ? Math.round(self/2.e6) : 1)" . sld:default "MODEL_DATA" . sld:default "target" . sld:type xsd:string . cwl:source ; cwl:valueFrom "$(Math.round(self/2.e6) > 1)" . rdfs:comment "Command with respect to the input task" ; cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(inputs.command+\"'\")" ] ; cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(inputs.command+\"'\")" ] ; cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(inputs.command+\"'\")" ] ; cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(inputs.command+\"'\")" ] ; cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(inputs.command+\"'\")" ] ; cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(inputs.command+\"'\")" ] ; sld:type xsd:string . sld:default 4500 . sld:default true . cwl:source ; cwl:valueFrom "$(self+\"_large\")" . sld:default "MODEL_DATA" . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:label "subtract_hires" ; cwl:in , ; cwl:out , ; cwl:run ; cwl:scatter ( ) . sld:default 1000000 . rdfs:label "concat_logfiles_apply_amp_2" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . sld:default "model_targ_fr" . cwl:source ; cwl:valueFrom "$(self > 25e6 ? 5 : Math.round(self/4.e6) > 1 ? 3 : false)" . rdfs:label "blank_image_reg" ; cwl:in , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.region != null)" . sld:default "ant" . cwl:source . sld:type cwl:File . sld:default 30 . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . sld:type xsd:string . cwl:source . rdfs:label "concat_logfiles_calib_targ" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . cwl:in , , , , , ; cwl:out , , , , , ; cwl:run ; cwl:scatter ( ) . rdfs:comment "This will split the set into intervals with the given maximum size, and flag each interval independently" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-chunk-size" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:int , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "predict_cal*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default true . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.sourcedb=" ; CommandLineBinding:separate false ] ; sld:type sld:null , cwl:Directory , cwl:File . sld:default true . sld:default true . rdfs:label "write_solutions_amp" ; cwl:in , , , , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . sld:type cwl:File . cwl:outputSource ; sld:type cwl:File . rdfs:comment "Comma separated list of (zero-indexed) band ids to process" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "-bands" ; CommandLineBinding:shellQuote false ] ; sld:type sld:null ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . sld:type xsd:int , sld:null . rdfs:comment "Filename of output H5Parm (to be read by e.g. losoto)" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.output_name_h5parm)" ] ; sld:type cwl:File . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:default 250 . sld:default true . cwl:source , , ; cwl:valueFrom "$(self.join(''))" . rdfs:label "add_missing_stations_amp" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . sld:type cwl:File . a cwl:Workflow ; rdfs:label "corrupt_model" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , ; cwl:outputs , . cwl:outputSource , ; cwl:pickValue "first_non_null" ; sld:type cwl:File . sld:default 30 . sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "pointing" ; sld:type xsd:string , sld:null . cwl:source . rdfs:comment "Choose correlation to be reset" ; sld:type xsd:string , sld:null . cwl:source . rdfs:comment "Initialize solver with the solutions of the previous time slot" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagatesolutions=True" ] ; sld:default true ; sld:type sld:null , xsd:boolean . rdfs:label "concat_logfiles_addcol" ; cwl:in , ; cwl:out ; cwl:run . sld:default "ant" . rdfs:comment "What storage manager to use." ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string , sld:null . rdfs:comment "verbose output" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; sld:default true ; sld:type xsd:boolean . cwl:source . rdfs:comment "Number of cores" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-n" ] ; sld:default 4 ; sld:type sld:null , xsd:int . cwl:in , , , , ; cwl:out , ; cwl:run . sld:default true . sld:default 4 . sld:type xsd:boolean , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).FWHM)" ; cwl:loadContents true ] ; sld:type xsd:float . rdfs:comment "Maximum number of iterations during approximating stage" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxapproxiter=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . sld:default "200arcsec" . cwl:source . cwl:valueFrom "$(1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) < 1 ? false : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) > 10 ? 10 : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)))" ; sld:default "getFWHM/fwhm" . rdfs:comment "Axes along which compute the normalization" ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:label "add_missing_stations" ; cwl:in , , , , , , , ; cwl:out , ; cwl:run . sld:default "10arcsec" . sld:default "time" . sld:default true . cwl:source . sld:default true . rdfs:comment "Write ds9 regions" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-d" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . sld:default true . sld:default true . sld:default true . cwl:source ; cwl:valueFrom "$(self > 25e6 ? 5 : Math.round(self/4.e6) > 1 ? 3 : false)" . sld:default "sol000/phase000" . rdfs:comment "Input measurement set" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:shellQuote false ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:outputSource ; sld:type cwl:Directory . sld:default 5.4e+07 . rdfs:comment "Output solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--outsolset" ] ; sld:default "sol000" ; sld:type xsd:string , sld:null . sld:default 2e-01 . sld:default 2000 ; sld:type xsd:int , sld:null . sld:default "10arcsec" . sld:default 512 . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-mgain" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:float , xsd:boolean , sld:null . rdfs:label "get_fr_model" ; cwl:in , ; cwl:out , ; cwl:run . rdfs:label "merge_array_files_amp_1" ; cwl:in ; cwl:out ; cwl:run . sld:default "MODEL_DATA" . sld:default 5e+07 ; sld:type xsd:float , sld:null . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . sld:default true . cwl:source , ; cwl:valueFrom "$(self.join('')+\"_\")" . sld:default "CORRECTED_DATA" . rdfs:label "getFWHM" ; cwl:in , ; cwl:out , ; cwl:run . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . rdfs:comment "If true performs smoothing" ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; cwl:inputBinding [ CommandLineBinding:prefix "-S" ; CommandLineBinding:separate true ; cwl:valueFrom "$(self ? 'True': 'False')" ] ; sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . sld:default "SMOOTHED_DATA" . cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . sld:default true . rdfs:label "set_corrected" ; cwl:in , ; cwl:out , ; cwl:run . cwl:source . sld:default 5e+06 . sld:default "CORRECTED_DATA" . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source , , , . cwl:source . sld:default true . rdfs:label "image_hires" ; cwl:in , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , , ; cwl:run . cwl:source ; cwl:valueFrom "$([self])" . cwl:source . cwl:outputSource ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "Dysco" . sld:default true . sld:default true . sld:default "target" . cwl:source , , ; cwl:valueFrom "$(self.join(''))" . cwl:source . a cwl:CommandLineTool ; rdfs:comment "Replace the values along a certain axis taking them from one specific axis\ncell\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('REPLICATEONAXIS').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('REPLICATEONAXIS').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . rdfs:label "concat_logfiles_FR" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "Number to normalize to vals = vals * (normVal/valsMean), by default 1." ; sld:type xsd:float , sld:null . cwl:source . a cwl:CommandLineTool ; rdfs:label "add_missing_stations" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "add_missing_stations.py" ) ; cwl:baseCommand ( "add_missing_stations.py" ) ; cwl:baseCommand ( "add_missing_stations.py" ) ; cwl:baseCommand ( "add_missing_stations.py" ) ; cwl:baseCommand ( "add_missing_stations.py" ) ; cwl:baseCommand ( "add_missing_stations.py" ) ; cwl:baseCommand ( "add_missing_stations.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.h5parm)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.h5parm)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.h5parm)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.h5parm)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.h5parm)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.h5parm)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.h5parm)" ] ] ; cwl:stderr "add_missing_stations_err.log" ; cwl:stdout "add_missing_stations.log" . sld:default "first" . cwl:source . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default 5e+07 ; sld:type xsd:float , sld:null . sld:default 8 . sld:default "CIRC_PHASEDIFF_DATA" . cwl:source ; cwl:valueFrom "$(self > 25e6 ? 5 : Math.round(self/4.e6) > 1 ? 3 : false)" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . cwl:in , , ; cwl:out , ; cwl:run . rdfs:comment "Solution table" ; sld:type xsd:string . a cwl:CommandLineTool ; rdfs:label "H5parm_collector" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:baseCommand ( "H5parm_collector.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "$(inputs.outh5parmname)-parm_collector_output_err.log" ; cwl:stdout "$(inputs.outh5parmname)-parm_collector_output.log" . sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(concatenate_path_wsclean(self))" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:in , , , , , , , , , ; cwl:out , , , ; cwl:run . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source ; cwl:valueFrom "$(\"apply_targ_slowtec\"+self)" . sld:default "MODEL_DATA" . cwl:source . sld:default "ph_" . cwl:source , . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . sld:type xsd:int , sld:null . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:outputSource ; sld:type cwl:File . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . sld:default "MODEL_DATA" . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:source ; cwl:valueFrom "$(\"apply_targ_fasttec\"+self)" . sld:default true . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-reordering" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null , xsd:int . rdfs:label "losoto_amplitude" ; cwl:in , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . rdfs:label "calib_targ1" ; cwl:in , , , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run . sld:default 1.5e+00 . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.file_prefix).$(inputs.file_suffix)" ] ; sld:type cwl:File . rdfs:comment "Path of parmdb in which the parameters are stored. This can also be an H5Parm file, in that case the filename has to end in '.h5'" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.parmdb=" ; CommandLineBinding:separate false ] ; sld:type cwl:File . rdfs:comment "Output MS" ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . sld:default 0 . cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.sources=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self)]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source , ; cwl:valueFrom "$(\"slow\"+self.join('')+\"_\")" . rdfs:comment "output table name (same solset)" ; sld:type xsd:string , sld:null . cwl:outputSource ; cwl:pickValue "all_non_null" ; sld:type cwl:File . sld:type xsd:string , sld:null . sld:default "DATA" . sld:default "GSM" ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(\"calib_targ_slowtec\"+self)" . sld:default "target" . sld:default "faraday" . sld:default 16 . a cwl:CommandLineTool ; rdfs:label "TaQL" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "taql" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin 2 ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "taql_err.log" ; cwl:stdout "taql.log" . rdfs:label "losoto_plot_phase2" ; cwl:in , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-join-channels" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "faraday" . sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(\"calib_targ_fasttec\"+self)" . cwl:pickValue "all_non_null" ; cwl:source . rdfs:comment "how to combine multiple regions with AND or OR" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--operation" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--operation" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--operation" ] ; sld:default "AND" ; sld:type xsd:string , sld:null . rdfs:comment "Output logfile" ; cwl:outputBinding [ CommandOutputBinding:glob "dp3_addcol*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "dp3_addcol*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "dp3_addcol*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Input data Column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "DATA" ; sld:type xsd:string . cwl:source . rdfs:comment "Step size in time for subsequent plotting\n" ; sld:type sld:null ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] . sld:default 8.5e-01 . rdfs:label "concat_logfiles_losoto_tec1" ; cwl:in , ; cwl:out ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . cwl:source . sld:default "apply_targ_amp_1" . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ] ; sld:type cwl:Directory . sld:default "sol000/phase000" . sld:default true . rdfs:comment "Stepsize between iterations" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.stepsize=" ; CommandLineBinding:separate false ] ; sld:default 2e-01 ; sld:type xsd:float , sld:null . sld:default "ALTER TABLE" . sld:default "tec000" . sld:default "MODEL_DATA" . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:source . rdfs:label "predict_targ" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . sld:default "apply_targ_amp_2" . cwl:pickValue "all_non_null" ; cwl:source . rdfs:comment "Do not smooth in time" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-t" ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "rotation000" . cwl:source . cwl:source . sld:default true . rdfs:comment "Tables to “add” (e.g. ‘sol000/tec000’), it works only for tec and clock\n to be added to phases.\n" ; sld:type xsd:string , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-sources.txt" ] ; sld:type sld:null , cwl:File . sld:default 4 . cwl:source . cwl:source ; cwl:valueFrom "$([self])" . cwl:source . sld:default true . sld:default "30arcsec" . sld:default "model_targ_fr" . cwl:source . cwl:source ; cwl:valueFrom "$(self+\"_mask\")" . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type cwl:Directory . rdfs:label "merge_array_files_lowres" ; cwl:in ; cwl:out ; cwl:run . rdfs:label "concat_logfiles_losoto_amp" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . sld:type xsd:string . rdfs:comment "Output h5parm name" ; sld:default "output.h5" ; sld:type cwl:File . sld:default "selfcal_large" . sld:default 1e+02 . cwl:source . cwl:source ; cwl:valueFrom "$(self.basename+\":CIRC_PHASEDIFF_DATA\")" . rdfs:label "replicate" ; cwl:in , , , ; cwl:out , ; cwl:run . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:source . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source , , , , , , , , . a cwl:Workflow ; rdfs:label "losoto_amplitude" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs ; cwl:outputs , . cwl:source . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory . sld:type xsd:string , sld:null . sld:type cwl:File . a cwl:CommandLineTool ; rdfs:comment "Duplicate a table\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:baseCommand ( "losoto" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('DUPLICATE').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('DUPLICATE').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('DUPLICATE').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . sld:default 0e+00 . sld:default "Dysco" . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:label "concat_logfiles_calib_targ2" ; cwl:in , , ; cwl:out ; cwl:run . rdfs:comment "the axis to plot on a page - e.g. ant to get all antenna’s on one file.\n" ; sld:type xsd:string , sld:null . cwl:source . sld:default "pol" . rdfs:label "write_solutions" ; cwl:in , , , , , , ; cwl:out , ; cwl:run . cwl:source . sld:default true . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:label "corrupt_amp" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . sld:default 2000 ; sld:type xsd:int , sld:null . sld:default "CORRECTED_DATA" ; sld:type xsd:string , sld:null . cwl:source . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . cwl:source . rdfs:comment "1- or 2-element array which says the coordinates to plot (2 for 3D plots).\n" ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "180arcsec" . cwl:source . sld:default true . sld:default "[RS208LBA,RS210LBA,RS307LBA,RS310LBA,RS406LBA,RS407LBA,RS409LBA,RS508LBA,RS509LBA]" . sld:default 250 . cwl:source . sld:type cwl:Directory , cwl:File . cwl:source ; cwl:valueFrom "$(self+\"tec1\")" . rdfs:comment "Use model data from the measurement set." ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.modeldatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default true . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default 1 . rdfs:label "calib_targ" ; cwl:in , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.invert=False" ; CommandLineBinding:separate false ] ; sld:type xsd:boolean , sld:null . rdfs:comment "Output table name. By default choose next available from table type." ; sld:type xsd:string , sld:null . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory . rdfs:comment "MS set output" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . cwl:outputSource ; sld:type cwl:File . sld:default true . rdfs:comment "Name of the H5parm solset" ; sld:default "sol000" ; sld:type xsd:string , sld:null . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-j" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean , xsd:int . sld:default "briggs -0.3" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)-parm_collector_output*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Make a plot containing antenna coordinates in x,y and in color the value\n to plot, axesInPlot must be [ant].\n" ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "set CORRECTED_DATA = DATA - MODEL_DATA" . sld:default "CORRECTED_DATA" . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type xsd:string , sld:null . sld:default "CORRECTED_DATA" . cwl:source . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . rdfs:comment "Mask name (default=imagename with mask in place of image)" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-m" ] ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-no-update-model-required" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "amp_" . sld:default true . rdfs:comment "Mask to add to the found one" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-c" ] ; sld:type cwl:File , sld:null . sld:default "tec" ; sld:type xsd:string , sld:null . rdfs:comment "Type of correction to perform. When using H5Parm, this is for now the name of the soltab; the type will be deduced from the metadata in that soltab, except for full Jones, in which case correction should be 'fulljones'.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.correction=" ; CommandLineBinding:separate false ] ; sld:default "gain" ; sld:type xsd:string . sld:default 300 . sld:default "Dysco" . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "corrupt_model" . cwl:source . cwl:source . sld:default "CORRECTED_DATA" . rdfs:label "compare_station_list_CR" ; cwl:in , ; cwl:out ; cwl:run . cwl:in , , ; cwl:out , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-psf.fits" , "$(inputs.image_name)-psf.fits" ] ; sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Write SRL skymodel" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-s" ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default true . sld:default true . a cwl:CommandLineTool ; rdfs:label "TaQL" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "taql" ) ; cwl:baseCommand ( "taql" ) ; cwl:baseCommand ( "taql" ) ; cwl:baseCommand ( "taql" ) ; cwl:baseCommand ( "taql" ) ; cwl:baseCommand ( "taql" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , ; cwl:outputs , ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin 2 ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin 2 ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin 2 ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin 2 ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin 2 ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin 2 ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:stderr "taql_err.log" ; cwl:stdout "taql.log" . sld:type xsd:boolean , sld:null . rdfs:label "concat_logfiles_calib_targ2" ; cwl:in , ; cwl:out ; cwl:run . a cwl:Workflow ; rdfs:label "selfcal_target" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , , ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] . cwl:linkMerge "merge_flattened" ; cwl:source . sld:type xsd:string , sld:null . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . rdfs:comment "Write BBS gaul skymodel" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-g" ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "losoto_plot_phase" ; cwl:in , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . sld:default 1e-03 . rdfs:comment "H5parm to which this action should be performed." ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; sld:default "output.h5" ; sld:type cwl:File . cwl:source . sld:default 1e+00 . rdfs:label "apply_targ1" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run . cwl:source . cwl:outputSource ; sld:type cwl:File . sld:default true . sld:default true . cwl:source . rdfs:label "add_fr_model" ; cwl:in , , , ; cwl:out , ; cwl:run . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-MFS-image.fits" , "$(inputs.image_name)-image.fits" ] ; sld:type cwl:File . rdfs:comment "Skip setting the metadata correctly" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--skipmetadata" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "h5parm_collector_output*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . sld:default 0 . sld:default 0 . rdfs:comment "Filename of output H5Parm" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.h5parm=" ; CommandLineBinding:separate false ] ; sld:default "instrument.h5" ; sld:type sld:null , xsd:string . sld:type xsd:string . cwl:source . rdfs:comment "Input data Column" ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "DATA" ; sld:type sld:null , xsd:string . sld:default 1e+00 . rdfs:comment "Output Measurement Set" ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout=" ; CommandLineBinding:separate false ] ; sld:default "" ; sld:type sld:null , xsd:string . sld:default "target" . rdfs:comment "overwrite output" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; sld:default true ; sld:type xsd:boolean . sld:default true . sld:default true . cwl:outputSource ; sld:type cwl:File . cwl:pickValue "all_non_null" ; cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-deconvolution-channels" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:int , xsd:boolean . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuv-l" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean , xsd:int . a cwl:Workflow ; rdfs:label "apply_calibrate_tec" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , ; cwl:outputs , , , , , , , , , , , . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.missingantennabehavior=" ; CommandLineBinding:separate false ] ; sld:type sld:null , xsd:string . cwl:source . sld:default "target" . sld:default "sol000/amplitudeSmooth" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "CIRC_PHASEDIFF_DATA" . sld:default "briggs -0.3" . sld:default "ant" . sld:default "[CR]*&&" . cwl:source . sld:type [ sld:items [ sld:items cwl:File ; sld:type sld:array ] ; sld:type sld:array ] ; sld:type [ sld:items [ sld:items cwl:File ; sld:type sld:array ] ; sld:type sld:array ] ; sld:type [ sld:items [ sld:items cwl:File ; sld:type sld:array ] ; sld:type sld:array ] ; sld:type [ sld:items [ sld:items cwl:File ; sld:type sld:array ] ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-deconvolution" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , xsd:int , sld:null . sld:default "pointing" ; sld:type xsd:string , sld:null . cwl:source . rdfs:label "remove_col" ; cwl:in , , ; cwl:out , ; cwl:run . cwl:source . sld:default "selfcal_subtract_lowres" . rdfs:comment "Input solution table" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_in" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_in" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_in" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_in" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_in" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_in" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--soltab_in" ] ; sld:default "phase000" ; sld:type sld:null , xsd:string . rdfs:comment "Prefix to add before the self-generated filename.\n" ; sld:default "losoto.plot." ; sld:type xsd:string , sld:null . sld:default 30 . sld:default 5000 . sld:type cwl:Directory . rdfs:comment "output image as given as output file name" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outfile)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outfile)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outfile)" ] ; sld:type cwl:File . cwl:source . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usechannelfreq=False" ; CommandLineBinding:separate false ; cwl:valueFrom "$(!self)" ] ; sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . rdfs:label "BLsmooth2" ; cwl:in , , , ; cwl:out , ; cwl:run . sld:default "ant" . sld:default true . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-multiscale-scales" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:string , sld:null , xsd:boolean . cwl:source ; cwl:valueFrom "$(self+\"_blank1.fits\")" . cwl:outputSource ; sld:type cwl:File . sld:type xsd:string , sld:null . cwl:source . rdfs:comment "H5parm database to compare with" ; sld:type cwl:File , sld:null . cwl:source . sld:default "ant" . cwl:pickValue "all_non_null" ; cwl:source . cwl:source . rdfs:label "concat_logfiles_apply_targ2" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:pickValue "all_non_null" ; cwl:source . cwl:source . rdfs:label "image_lowres" ; cwl:in , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , , ; cwl:run . sld:default 50 ; sld:type xsd:float , sld:null . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-minuv-l" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:int , sld:null , xsd:boolean . sld:default "time" , "freq" . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . cwl:source . sld:default 1 . rdfs:comment "Output column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-o" ] ; sld:default "SMOOTHED_DATA" ; sld:type sld:null , xsd:string . rdfs:comment "Concatenate all input SBs on-the-fly" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-concatenate-frequency" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.prefix)*.png" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:type cwl:File . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.beammode=" ; CommandLineBinding:separate false ] ; sld:default "default" ; sld:type xsd:string , sld:null . sld:default true . sld:type xsd:int , sld:null . rdfs:comment "Reference antenna for phases. By default None.\n" ; sld:default "" ; sld:type xsd:string , sld:null . cwl:source . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source , , , , . cwl:source . sld:default "10arcsec" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-predict" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "calib_targ_fr" . sld:type cwl:File . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "applycal_$(inputs.correction)*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:outputBinding [ CommandOutputBinding:glob "mslin2circ*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "FR_MODEL_DATA" . cwl:source . sld:default "unit" . cwl:source . sld:default 0 . cwl:source . cwl:source . sld:type xsd:int , sld:null . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . rdfs:label "losoto_plot_Pd" ; cwl:in , , , , , , , , ; cwl:out , , ; cwl:run . sld:default "target" . a cwl:CommandLineTool ; rdfs:comment "This operation for LoSoTo implements basic plotting WEIGHT:\n flag-only compliant, no need for weight\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:arguments ( "run_losoto_plot.sh" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:baseCommand ( "bash" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('PLOT').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ cwl:entry "#!/bin/bash\nset -e\nINPUT_H5PARM=$(inputs.input_h5parm.basename)\nDO_PLOTS=$(inputs.execute)\nif [ \"$DO_PLOTS\" = \"true\" ]; then\n losoto --verbose $INPUT_H5PARM parset.config\nelse\n echo Skipped plotting 3rd order tec solutions\nfi\n" ; cwl:entryname "run_losoto_plot.sh" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . rdfs:label "compare_station_list_R" ; cwl:in , , ; cwl:out ; cwl:run . rdfs:label "get_circ_phasedif" ; cwl:in , ; cwl:out , ; cwl:run . cwl:source . rdfs:label "losoto_plot_P3" ; cwl:in , , , , , , , , ; cwl:out , , ; cwl:run . sld:type cwl:File . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:label "corrupt_model" ; cwl:in , , , ; cwl:out , ; cwl:run ; cwl:scatter ( ) . rdfs:comment "The FHWM of the image" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--fwhm" ] ; sld:type xsd:float . sld:default "tec000" . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . sld:default 5e+07 ; sld:type xsd:float , sld:null . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-channels-out" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:int , xsd:boolean , sld:null . sld:default "CORRECTED_DATA" . cwl:source . rdfs:comment "Gives an indication on how strong is the ionosphere" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-f" ] ; sld:default 1e-02 ; sld:type xsd:float , sld:null . sld:default "Dysco" . sld:default "CIRC_PHASEDIFF_DATA" . sld:default "MODEL_DATA" . cwl:source . cwl:source . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source , , . rdfs:comment "Do not backup the old WEIGHT_SPECTRUM in WEIGHT_SPECTRUM_ORIG" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-b" ] ; sld:default false ; sld:type sld:null , xsd:boolean . sld:default "target" . sld:default "30arcsec" . rdfs:label "concat_logfiles_corrupt" ; cwl:in , ; cwl:out ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-niter" ; CommandLineBinding:shellQuote false ] ; sld:default 1000 ; sld:type sld:null , xsd:int . rdfs:comment "Region file" ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; cwl:inputBinding [ CommandLineBinding:position 1 ] ; sld:type cwl:File , sld:null . rdfs:comment "Input image" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:File . cwl:source , , ; cwl:valueFrom "$(\"slow\"+self.join(''))" . sld:default "20arcsec" . rdfs:label "image_large" ; cwl:in , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run . rdfs:label "concat_logfiles_apply_targ2" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source ; cwl:valueFrom "$(self+'000')" . a cwl:Workflow ; rdfs:label "TEC'n'amp" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , , , , ; cwl:outputs , , , , ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] . sld:default true . rdfs:comment "Unwrap phases." ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "losoto_plot_tec1" ; cwl:in , , , , , , , ; cwl:out , , ; cwl:run . sld:default true . cwl:source . sld:default "faraday" . rdfs:comment "Solution table" ; sld:type xsd:string . cwl:source . cwl:source . cwl:source . cwl:source . sld:default "ant" . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . rdfs:comment "Join all SPWs together in frequency direction before flagging" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-combine-spws" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "model_fr" . cwl:outputSource ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "Smooth only amplitudes" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-a" ] ; sld:default false ; sld:type sld:null , xsd:boolean . cwl:source . cwl:source . cwl:source . rdfs:comment "Threshold pixel" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-p" ] ; sld:default 5 ; sld:type xsd:int , sld:null . rdfs:comment "Input main task name" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "'" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "'" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "'" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "'" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "'" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "'" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ] ; sld:default "UPDATE" ; sld:type xsd:string , sld:null . a cwl:CommandLineTool ; rdfs:label "AOFlagger" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "aoflagger" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ShellCommandRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:stderr "aoflag_err.log" ; cwl:stdout "aoflag.log" . sld:default "MODEL_DATA" . cwl:source . sld:default 3e+00 . cwl:outputSource ; sld:type cwl:File . rdfs:label "aoflag_residual" ; cwl:in , , , , , ; cwl:out , ; cwl:run . cwl:source . sld:default "time" , "freq" . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager.databitrate=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . rdfs:comment "Solution table" ; sld:default "sol000/rotation000" ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . a cwl:Workflow ; rdfs:label "faraday_rotation" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , ; cwl:outputs , . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.updateweights=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . rdfs:comment "Minimum number of visibilities within a solution interval" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.minvisratio=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type sld:null , xsd:float . rdfs:comment "Size of the image [x,y], if one of the values is 0, then it is\nautomatically chosen. By default automatic set.\n" ; sld:default 0 ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . sld:default "CORRECTED_DATA" . sld:default "rotation000" . cwl:pickValue "all_non_null" ; cwl:source . rdfs:label "remove baseline syntax characters and convert it to a list" ; cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . cwl:linkMerge "merge_flattened" ; cwl:source . sld:default true . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . rdfs:comment "will produce verbose output" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "-v" ] ; sld:type xsd:boolean , sld:null . cwl:source . cwl:pickValue "all_non_null" ; cwl:source . sld:default 2e-01 . rdfs:label "calib_targ_amp" ; cwl:in , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . rdfs:comment "Output solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; sld:type sld:null , xsd:string . sld:default "LBA" . rdfs:label "apply_targ_amp" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run ; cwl:scatter ( ) . cwl:source . sld:default "ant" . rdfs:comment "Size of the markers in the 2D plot. By default 2.\n" ; sld:default 2 ; sld:type xsd:int , sld:null . cwl:source . rdfs:comment "Output solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insoltab" ] ; sld:type sld:null , xsd:string . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . rdfs:comment "Keep history of the export soltabs" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-H" ] ; sld:default false ; sld:type xsd:boolean . sld:default "unit" . rdfs:label "concat_logfiles_addcol" ; cwl:in , ; cwl:out ; cwl:run . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . rdfs:comment "List of soltabs to subtract" ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . cwl:outputSource ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . cwl:source . sld:type xsd:int , sld:null . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "applycal.solset=" ; CommandLineBinding:separate false ] ; sld:default "sol000" ; sld:type xsd:string . sld:default "sol000/phase000" . cwl:source . sld:default 10000 . rdfs:label "concat_logfiles_predict" ; cwl:in , ; cwl:out ; cwl:run . rdfs:label "concat_logfiles_apply_amp_2" ; cwl:in , ; cwl:out ; cwl:run . sld:default true . sld:type cwl:Directory , cwl:File . cwl:source . rdfs:label "H5parm_collector" ; cwl:in , , , ; cwl:out , ; cwl:run . cwl:source ; cwl:valueFrom "$(self.replaceAll(';',';!'))" . cwl:source . sld:default "sol000/amplitude000" . sld:default 1.8e+02 . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-circular-beam" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:comment "Output MS" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--outms" ] ; sld:default "" ; sld:type xsd:string , sld:null . sld:default 0 . rdfs:comment "Input Measurement Set string (including dummy.ms)" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 1 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:source . sld:default "pol" . sld:default "time" , "freq" . sld:default "sol000" . rdfs:label "recreate_model" ; cwl:in , , , , , , , ; cwl:out , ; cwl:run . sld:type cwl:File . rdfs:comment "Dictionary that contains the flagged fraction per station" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.jsonfilename)" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).flagged_fraction_dict)" ; cwl:loadContents true ] ; sld:type xsd:string . cwl:source ; cwl:valueFrom "$(self+\"_mask\")" . cwl:source . cwl:outputSource ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:comment "Solution interval in timesteps" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.solint=" ; CommandLineBinding:separate false ] ; sld:default 1 ; sld:type xsd:int , sld:null . cwl:source ; cwl:valueFrom "$(self+\"_hires\")" . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-threshold" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null , xsd:float . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-auto-mask" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:float , xsd:boolean , sld:null . cwl:source . sld:default 0 . cwl:source ; cwl:valueFrom "$(self+\"amplitude\")" . sld:default true . sld:default true . sld:default "2" . cwl:source . sld:default true . rdfs:comment "Uses an approximation stage in which the phases are constrained with the piece-wise fitter, to solve local minima problems." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approximatetec=True" ] ; sld:default false ; sld:type sld:null , xsd:boolean . cwl:source . sld:default "Dysco" . cwl:source . sld:type cwl:File . sld:default "time" . cwl:outputSource ; sld:type cwl:File . cwl:in , , , ; cwl:out , , ; cwl:run . rdfs:label "H5parm_collector_tec1" ; cwl:in , , , ; cwl:out , ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.usechannelfreq=False" ; cwl:valueFrom "$(!self)" ] ; sld:default true ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "MODEL_DATA" ; sld:type xsd:string , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "make_beam_reg*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Output logfile" ; cwl:outputBinding [ CommandOutputBinding:glob "taql*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "taql*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "taql*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "taql*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "taql*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "taql*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Input solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; sld:default "sol000" ; sld:type sld:null , xsd:string . cwl:source . rdfs:label "concat_logfiles_BLsmooth" ; cwl:in , ; cwl:out ; cwl:run . sld:type cwl:File . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-baseline-averaging" ] ; sld:default false ; sld:type sld:null , xsd:float . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:source . a cwl:CommandLineTool ; rdfs:comment "Normalize the solutions to a given value WEIGHT: Weights compliant\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('NORM').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('NORM').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . rdfs:label "merge_array_files_hires" ; cwl:in ; cwl:out ; cwl:run . cwl:source . a cwl:CommandLineTool ; rdfs:comment "Subtract/divide two tables or a clock/tec/tec3rd/rm from a phase." ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ; cwl:listing [ cwl:entry "$(get_losoto_config('RESIDUALS').join('\\n'))" ; cwl:entryname "parset.config" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . cwl:source ; cwl:valueFrom "$(self > 25e6 ? 5 : Math.round(self/4.e6) > 1 ? 3 : false)" . sld:default 8.5e-01 . cwl:source . sld:default 3e+06 . sld:type cwl:File . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:inputBinding [ CommandLineBinding:prefix "msout.overwrite=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:comment "Input solset name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--insolset" ] ; sld:default "sol000" ; sld:type sld:null , xsd:string . cwl:source . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-dirty" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-dirty','').replaceAll('-0000',''))" ] ; sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:outputSource , ; cwl:pickValue "first_non_null" ; sld:type cwl:Directory . sld:default "briggs -0.3" . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . sld:default "add_corrected_col" . sld:default "log" ; sld:type xsd:string , sld:null . cwl:outputSource ; sld:type cwl:File . sld:default "BLsmooth_model" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-dirty.fits" , "$(inputs.image_name)-dirty.fits" ] ; sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default 512 . sld:default "time" . cwl:source . cwl:in , , ; cwl:out , ; cwl:run . sld:default true . sld:default true . sld:default "predict_targ" . sld:default 0 . rdfs:comment "Define output file name for JSON statistics" ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "count.jsonfilename=" ; CommandLineBinding:separate false ] ; sld:default "out.json" ; sld:type sld:null , xsd:string . sld:default true . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . rdfs:comment "Tolerance at which the approximating first stage is considered to be converged and the second full-constraining stage is started." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.approxtolerance=" ; CommandLineBinding:separate false ] ; sld:type xsd:float , sld:null . sld:type cwl:File , xsd:string , sld:null . rdfs:label "concat_logfiles_recreate" ; cwl:in , ; cwl:out ; cwl:run . sld:default 0 . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 1)" . cwl:source . rdfs:label "subtract_lowres" ; cwl:in , ; cwl:out , ; cwl:run ; cwl:scatter ( ) . sld:default "LBA" ; sld:type xsd:string , sld:null . cwl:source . rdfs:label "merge_array_files_amp_2" ; cwl:in ; cwl:out ; cwl:run . sld:type cwl:File , sld:null . cwl:source . rdfs:comment "Max average residual in radians before flagging datapoint,\nby default 1. If 0: no check.\n" ; sld:type xsd:float , sld:null . cwl:source . sld:default true . rdfs:comment "A list of lists specifying groups of antennas that are to be constrained to have the same solution." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.antennaconstraint=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "Type of constraint to apply. Options are\n" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.mode=" ; CommandLineBinding:separate false ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] ; sld:type [ sld:symbols , , , , , , , , , , , ; sld:type sld:enum ] . sld:type xsd:boolean , sld:null . rdfs:label "BLsmooth_model" ; cwl:in , , , , ; cwl:out , ; cwl:run . sld:default 20 . sld:default true ; sld:type xsd:boolean , sld:null . sld:default "time" , "freq" . a cwl:CommandLineTool ; rdfs:label "mslin2circ" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "mslin2circ.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:stderr "mslin2circ_err.log" ; cwl:stdout "mslin2circ.log" . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "python3" "compare_station_list.py" ) ; cwl:baseCommand ( "python3" "compare_station_list.py" ) ; cwl:baseCommand ( "python3" "compare_station_list.py" ) ; cwl:baseCommand ( "python3" "compare_station_list.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ cwl:entry "null = None\nimport sys\nimport json\nfrom compareStationList import main as compareStationList\n\nmss = sys.argv[1:]\ninputs = json.loads(r\"\"\"$(inputs)\"\"\")\nif inputs['h5parmdb']:\n h5parmdb = inputs['h5parmdb']['path']\nelse:\n h5parmdb = None\nsolset_name = inputs['solset_name']\nfilter = inputs['filter']\nstation_list = inputs['station_list']\n\noutput = compareStationList(mss, h5parmdb, solset_name, filter, station_list)\n\nfilter_out = output['filter']\nmatch_out = output['match']\ncwl_output = {\"filter_out\": filter_out, \"match_out\": match_out}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "compare_station_list.py" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ cwl:entry "null = None\nimport sys\nimport json\nfrom compareStationList import main as compareStationList\n\nmss = sys.argv[1:]\ninputs = json.loads(r\"\"\"$(inputs)\"\"\")\nif inputs['h5parmdb']:\n h5parmdb = inputs['h5parmdb']['path']\nelse:\n h5parmdb = None\nsolset_name = inputs['solset_name']\nfilter = inputs['filter']\nstation_list = inputs['station_list']\n\noutput = compareStationList(mss, h5parmdb, solset_name, filter, station_list)\n\nfilter_out = output['filter']\nmatch_out = output['match']\ncwl_output = {\"filter_out\": filter_out, \"match_out\": match_out}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "compare_station_list.py" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ; cwl:listing [ cwl:entry "null = None\nimport sys\nimport json\nfrom compareStationList import main as compareStationList\n\nmss = sys.argv[1:]\ninputs = json.loads(r\"\"\"$(inputs)\"\"\")\nif inputs['h5parmdb']:\n h5parmdb = inputs['h5parmdb']['path']\nelse:\n h5parmdb = None\nsolset_name = inputs['solset_name']\nfilter = inputs['filter']\nstation_list = inputs['station_list']\n\noutput = compareStationList(mss, h5parmdb, solset_name, filter, station_list)\n\nfilter_out = output['filter']\nmatch_out = output['match']\ncwl_output = {\"filter_out\": filter_out, \"match_out\": match_out}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "compare_station_list.py" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "null = None\nimport sys\nimport json\nfrom compareStationList import main as compareStationList\n\nmss = sys.argv[1:]\ninputs = json.loads(r\"\"\"$(inputs)\"\"\")\nif inputs['h5parmdb']:\n h5parmdb = inputs['h5parmdb']['path']\nelse:\n h5parmdb = None\nsolset_name = inputs['solset_name']\nfilter = inputs['filter']\nstation_list = inputs['station_list']\n\noutput = compareStationList(mss, h5parmdb, solset_name, filter, station_list)\n\nfilter_out = output['filter']\nmatch_out = output['match']\ncwl_output = {\"filter_out\": filter_out, \"match_out\": match_out}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n" ; cwl:entryname "compare_station_list.py" ] ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:stderr "compareStationList_err.log" ; cwl:stdout "compareStationList.log" . sld:default 1.8e+00 . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "SET FR_MODEL_DATA[,0]=0.5+0i, FR_MODEL_DATA[,1]=0.0+0i, FR_MODEL_DATA[,2]=0.0+0i, FR_MODEL_DATA[,3]=0.5+0i" . sld:default "Dysco" . cwl:source . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . sld:default "tec" . sld:default "GSM" ; sld:type xsd:string , sld:null . cwl:source . cwl:outputSource , , , , ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default true . cwl:source ; cwl:valueFrom "$(self+\"amplitude\")" . a cwl:Workflow ; rdfs:label "imaging_subtract" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , , , , , , , , ; cwl:outputs , , ; cwl:requirements [ a cwl:ScatterFeatureRequirement ] ; cwl:requirements [ a cwl:SubworkflowFeatureRequirement ] . rdfs:label "corrupt_slowtec" ; cwl:in , , , , , , , , , , ; cwl:out , ; cwl:run . rdfs:comment "Output MS" ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; cwl:outputBinding [ CommandOutputBinding:outputEval "$(inputs.msin)" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:type cwl:File . rdfs:label "compare_station_list_superterp" ; cwl:in , ; cwl:out ; cwl:run . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[]" "msout=." ) ; cwl:arguments ( "steps=[]" "msout=." ) ; cwl:arguments ( "steps=[]" "msout=." ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:stderr "dp3_addcol_err.log" ; cwl:stdout "dp3_addcol.log" . sld:default "set CORRECTED_DATA = CORRECTED_DATA - MODEL_DATA" . sld:default "diagonal" . rdfs:label "predict_hires" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . rdfs:label "FaradayRot" ; cwl:in , , ; cwl:out , ; cwl:run . cwl:outputSource ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "CORRECTED_DATA" . rdfs:comment "Output file name" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--outfile" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--outfile" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--outfile" ] ; sld:type xsd:string , sld:null . cwl:valueFrom "$(1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) < 1 ? false : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) > 10 ? 10 : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)))" ; sld:default "getFWHM/fwhm" . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . sld:default false . sld:default "sol000/phase000" . sld:default true . cwl:outputSource ; sld:type cwl:File . cwl:outputSource ; sld:type cwl:Directory . sld:default 1e+02 . cwl:source . sld:default "[CS001LBA,CS002LBA,CS003LBA,CS004LBA,CS005LBA,CS006LBA,CS007LBA,CS011LBA,CS013LBA,CS017LBA,CS021LBA,CS024LBA,CS026LBA,CS028LBA,CS030LBA,CS031LBA,CS032LBA,CS101LBA,CS103LBA,CS201LBA,CS301LBA,CS302LBA,CS401LBA,CS501LBA,RS106LBA,RS205LBA,RS305LBA,RS306LBA,RS503LBA]" . cwl:outputSource ; sld:type cwl:File . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-weight" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , xsd:string , sld:null . rdfs:comment "rms box size" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-r" ] ; sld:default "100,10" ; sld:type xsd:string , sld:null . rdfs:label "add_missing_stations1" ; cwl:in , , , , , , , ; cwl:out , ; cwl:run . cwl:source ; cwl:valueFrom "$(\"BLsmooth_model\"+self)" . rdfs:label "calib_targ2" ; cwl:in , , , , , , , , , , , , , , , , ; cwl:out , , ; cwl:run . rdfs:comment "pixel value to be set" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--blankval" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--blankval" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--blankval" ] ; sld:default 0e+00 ; sld:type xsd:float , sld:null . rdfs:comment "Input measurement set and column name" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--inms" ] ; sld:type xsd:string . sld:type cwl:File , sld:null . cwl:source . rdfs:label "concat_logfiles_apply_targ" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "Command with respect to the input task" ; cwl:inputBinding [ CommandLineBinding:position 3 ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(inputs.command+\"'\")" ] ; sld:type xsd:string . cwl:linkMerge "merge_flattened" ; cwl:source . sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(self == \"LBA\" ? 1e-2 : 0.2e-3)" . rdfs:label "concat_logfiles_makemask" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "Flag only the unconverged solutions for which divergence was detected.\nAt the moment, this option is effective only for rotation+diagonal\nsolves, where divergence is detected when the amplitudes of any station\nare found to be more than a factor of 5 from the mean amplitude over all\nstations.\nIf divergence for any one station is detected, all stations are flagged\nfor that solution interval. Only effective when flagunconverged=true\nand mode=rotation+diagonal.\n" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagdivergedonly=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . sld:default 0 . sld:default -3.14e+00 , 3.14e+00 . sld:default "SMOOTHED_DATA" . sld:default "losoto_FR_targ" . sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "30arcsec" . cwl:source . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:shellQuote false ] ; sld:type cwl:Directory . cwl:source . cwl:source . cwl:source . sld:default "apply_targ_slowtec" . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 0 ? Math.round(self/4.e6) : 1)" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-local-rms" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . rdfs:label "concat_logfiles_losoto_tec2" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . sld:default 1e+00 . sld:default "target" . rdfs:label "make_mask_image" ; cwl:in , , , , , , , , , , , , , , , , , , ; cwl:out , , , , , ; cwl:run . sld:default "ant" . cwl:source . sld:default "CORRECTED_DATA" . cwl:outputSource ; sld:type cwl:File . cwl:source . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:pickValue "all_non_null" ; cwl:source . sld:default "apply_targ_slowtec" . cwl:source . sld:default 1e+03 . cwl:source . a cwl:CommandLineTool ; rdfs:comment "This operation resets all values of the selected solution tables.\n" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "--verbose" "$(inputs.input_h5parm.basename)" "parset.config" ) ; cwl:baseCommand ( "losoto" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ; InlineJavascriptRequirement:expressionLib "function get_losoto_config(step_name) {\n var par = ['soltab = ' + inputs.soltab]\n if (inputs.ncpu !== null && inputs.ncpu !== undefined) par.push('ncpu='+inputs.ncpu);\n par.push(\"[\" + step_name + \"]\")\n par.push('operation=' + step_name)\n for(var field_name in inputs){\n if(field_name === 'input_h5parm' ||\n field_name === 'soltab' ||\n field_name === 'ncpu' || \n field_name === 'execute') continue;\n\n if(inputs[field_name] === null ||\n inputs[field_name] === 'null') continue;\n \n if(inputs[field_name][\"class\"] !== undefined &&\n (inputs[field_name][\"class\"] ===\"Directory\" ||\n inputs[field_name][\"class\"] ===\"File\")){\n par.push(field_name+'='+inputs[field_name].path)\n } else {\n par.push(field_name+'='+inputs[field_name])\n }\n }\n return par\n}\n\nfunction concatenate_path(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return '[' + object_list.join(',') + ']'\n \n}\n\nfunction concatenate_path_wsclean(object_list){\n object_list.forEach(function (x, index, arr) {arr[index] = x.path;});\n return object_list.join(' ')\n \n}" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "$(get_losoto_config('RESET').join('\\n'))" ; cwl:entryname "parset.config" ] ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_h5parm)" ; cwl:entryname "$(inputs.input_h5parm.basename)" ] ] ; cwl:stderr "$(inputs.input_h5parm.basename)-losoto_err.log" ; cwl:stdout "$(inputs.input_h5parm.basename)-losoto.log" . sld:default true . rdfs:comment "removes all axes with the length of 1" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; sld:default false ; sld:type xsd:boolean . rdfs:comment "input image as output" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_image.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_image.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_image.basename)" ] ; sld:type cwl:File . sld:default true . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:outputBinding [ CommandOutputBinding:glob "add_missing_stations*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "add_missing_stations*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "add_missing_stations*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "add_missing_stations*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "add_missing_stations*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "add_missing_stations*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "add_missing_stations*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . cwl:source . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . rdfs:label "concat_logfiles_BLsmooth" ; cwl:in , ; cwl:out ; cwl:run . sld:default "phaseOrig" . sld:default "faraday" . rdfs:label "blank_image_reg_1" ; cwl:in , , , ; cwl:out , , ; cwl:run . cwl:source . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:label "concat_logfiles_lowres" ; cwl:in , ; cwl:out ; cwl:run . sld:default true ; sld:type xsd:boolean , sld:null . rdfs:label "mslin2circ" ; cwl:in , , , ; cwl:out , ; cwl:run . sld:default "ampSmooth_" . sld:default 300 . rdfs:comment "Ignore baselines / channels with UV < uvlambdamin wavelengths." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvlambdamin=" ; CommandLineBinding:separate false ] ; sld:default 3e+02 ; sld:type xsd:float , sld:null . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:inputBinding [ CommandLineBinding:prefix "msout.writefullresflag=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . a cwl:Workflow ; rdfs:label "predict_calibrate_fr" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , , ; cwl:outputs , , , , , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:StepInputExpressionRequirement ] . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default 5e-01 . cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msout.storagemanager=" ] ; sld:default "" ; sld:type xsd:string . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . sld:default "aoflag_residual" . sld:default "ant" . sld:type cwl:File , xsd:string , sld:null . rdfs:label "add_circ_phasedif" ; cwl:in , , , ; cwl:out , ; cwl:run . rdfs:comment "Solution table that will be reset" ; sld:type xsd:string . rdfs:label "subtract_model" ; cwl:in , ; cwl:out , ; cwl:run . rdfs:comment "Will read the entire measurement set in memory. This is the fastest,\nbut requires much memory.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-memory-read" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:boolean , sld:null . rdfs:label "write_solutions1" ; cwl:in , , , , , , ; cwl:out , ; cwl:run . sld:type cwl:File . rdfs:label "concat_logfiles_apply_targ" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "Solution table" ; sld:type xsd:string . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.onebeamperpatch=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default 3 . cwl:source . rdfs:label "losoto_plot_phasediff" ; cwl:in , , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 0 ? Math.round(self/4.e6) : 1)" . sld:default 1 . sld:default "1" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-size" ; CommandLineBinding:shellQuote false ] ; sld:default 2500 ; sld:type sld:null ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] ; sld:type [ sld:items xsd:int ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . cwl:outputSource ; sld:type cwl:File . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . rdfs:label "corrupt_fr" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).match_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).match_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).match_out)" ; cwl:loadContents true ] ; cwl:outputBinding [ CommandOutputBinding:glob "out.json" ; CommandOutputBinding:outputEval "$(JSON.parse(self[0].contents).match_out)" ; cwl:loadContents true ] ; sld:type xsd:string . rdfs:label "apply_targ" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run . sld:default "recreate_model" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.h5parm.basename)" ] ; sld:type cwl:File . rdfs:comment "Flag unconverged solutions (i.e., those from solves that did not converge\nwithin maxiter iterations).\n" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.flagunconverged=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source . rdfs:comment "Will perform the slowest IO but will always work.\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-direct-read" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:boolean , sld:null . cwl:source . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)" ] ; sld:type cwl:File . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 1)" . sld:default "sol000/amplitudeSmooth" . cwl:source ; cwl:valueFrom "$(\"losoto_slowtec\"+self)" . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . rdfs:comment "External H5parm from which the full list of antennas is used from." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refh5" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refh5" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refh5" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refh5" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refh5" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refh5" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--refh5" ] ; sld:type cwl:File . sld:default "0,4,8,16,32,64" . cwl:pickValue "all_non_null" ; cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . cwl:source ; cwl:valueFrom "$(\"losoto_fasttec\"+self)" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-maxuvw-m" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean , xsd:int . cwl:source ; cwl:valueFrom "$([\"[\"+self.replaceAll('*;',',').replaceAll('*','').replaceAll(';','').replaceAll('&','')+\"]\"])" . cwl:source . sld:default true . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-f" ] ; sld:type xsd:float , sld:null . rdfs:comment "Weights are updated to reflect the combined polarization (cannot be undone with -r)" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--weights" ] ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(self+\"_tmp\")" . cwl:linkMerge "merge_flattened" ; cwl:source . sld:default "time" , "freq" . cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "BLsmooth.log" ] ; sld:type cwl:File . rdfs:comment "Save statistics as JSON file" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "count.savetojson=True" ] ; sld:default true ; sld:type xsd:boolean , sld:null . sld:default true . sld:default "tec" ; sld:type xsd:string , sld:null . rdfs:label "concat_logfiles_model" ; cwl:in , ; cwl:out ; cwl:run . sld:default "[CS001LBA,CS002LBA,CS003LBA,CS004LBA,CS005LBA,CS006LBA,CS007LBA,CS011LBA,CS013LBA,CS017LBA,CS021LBA,CS024LBA,CS026LBA,CS028LBA,CS030LBA,CS031LBA,CS032LBA,CS101LBA,CS103LBA,CS201LBA,CS301LBA,CS302LBA,CS401LBA,CS501LBA]" . cwl:in , , , ; cwl:out , ; cwl:run . sld:default 15 . sld:default "MODEL_DATA" . cwl:valueFrom "$(1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) < 1 ? false : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)) > 10 ? 10 : 1.87e3 * 60000. * 2. * Math.PI / (24 * 60 * 60 * Math.round(2.1 * self * 3600 / 10.)))" ; sld:default "getFWHM/fwhm" . sld:type cwl:Directory . sld:default "sol000/phaseOrig" . cwl:pickValue "all_non_null" ; cwl:source . sld:default "calib_targ_amp" . cwl:source . rdfs:comment "BDSF extended source detection" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-t" ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default "CORRECTED_DATA" . rdfs:label "apply_targ2" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "make_mask*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Number of cpus, by default all available." ; sld:type xsd:int , sld:null . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.usebeammodel=True" ; CommandLineBinding:separate false ] ; sld:default false ; sld:type sld:null , xsd:boolean . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-padding" ] ; sld:type sld:null , xsd:float . sld:default "SET CIRC_PHASEDIFF_DATA[,0]=0.5*EXP(1.0i*(PHASE(CIRC_PHASEDIFF_DATA[,0])-PHASE(CIRC_PHASEDIFF_DATA[,3]))), CIRC_PHASEDIFF_DATA[,3]=CIRC_PHASEDIFF_DATA[,0], CIRC_PHASEDIFF_DATA[,1]=0+0i, CIRC_PHASEDIFF_DATA[,2]=0+0i" . sld:default "FR_MODEL_DATA" . cwl:source . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . sld:default "CS001LBA" ; sld:type xsd:string , sld:null . rdfs:comment "When unequal to 0, all stations within the given distance from the reference station (0) will be constrained to have the same solution (in metres)" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.coreconstraint=" ; CommandLineBinding:separate false ] ; sld:default 0e+00 ; sld:type sld:null , xsd:float . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.usebeammodel=True" ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:label "tec_and_amp" ; cwl:in , , , , , , , , , , , , , , , ; cwl:out , , , , ; cwl:run . sld:default -3.14e+00 , 3.14e+00 . cwl:source . cwl:source . cwl:source ; cwl:valueFrom "$(Math.round(self/2.e6) > 0 ? Math.round(self/2.e6) : 1)" . rdfs:comment "Output data column name" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "CORRECTED_DATA" ; sld:type xsd:string , sld:null . sld:default "CORRECTED_DATA" . sld:default "sol000/phase000" . sld:default 1e-03 . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 0 ? Math.round(self/4.e6) : 1)" . sld:default 6000 . rdfs:comment "Optional extra data columns to read" ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.extradatacolumns=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . rdfs:comment "This must be a len=2 axis and the plot will have the differential value\n- e.g. ‘pol’ to plot XX-YY.\n" ; sld:type xsd:string , sld:null . cwl:source . rdfs:comment "Input image" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:File . rdfs:comment "MS to compare with" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . rdfs:label "make_mask" ; cwl:in , , , , ; cwl:out , ; cwl:run . sld:default "sol000/faraday" . cwl:source ; cwl:valueFrom "$(\"slow\"+self+\"tec1\")" . cwl:outputSource ; sld:type cwl:File . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-nmiter" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , xsd:int , sld:null . sld:default -1e+00 , 1e+00 . sld:default 50 ; sld:type xsd:float , sld:null . sld:default "calib_targ_faraday" . cwl:pickValue "all_non_null" ; cwl:source . rdfs:label "apply_calibrate_tec" ; cwl:in , , , , , , , , , , ; cwl:out , , , , , , , , , , , ; cwl:run ; cwl:scatter ( ) ; cwl:scatter ( ) . cwl:source . cwl:source . cwl:source . sld:default true . rdfs:label "predict_lowres" ; cwl:in , , , , , , , , , ; cwl:out , ; cwl:run . sld:default false . cwl:source ; cwl:valueFrom "$(\"BLsmooth\"+self)" . sld:default true . cwl:source . cwl:linkMerge "merge_flattened" ; cwl:source . rdfs:comment "Input Measurement Set(s)" ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:itemSeparator "," ; CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ; cwl:valueFrom "[$(self.map(function(directory){ return directory.basename; }).join(','))]" ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . sld:default -3.14e+00 , 3.14e+00 . sld:default "CS001LBA" ; sld:type xsd:string , sld:null . sld:default "selfcal_predict" . rdfs:comment "Make a movie summing up all the produced plots.\n" ; sld:default false ; sld:type xsd:boolean , sld:null . cwl:linkMerge "merge_flattened" ; cwl:source , , , . rdfs:label "tec_and_amp_2" ; cwl:in , , , , , , , , , , , , , , , ; cwl:out , , , , ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . a cwl:CommandLineTool ; rdfs:label "getFWHM" ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( [ CommandLineBinding:position 0 ; cwl:valueFrom "getFWHM.py" ] ) ; cwl:baseCommand ( "python3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , ; cwl:outputs , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ cwl:entry "import sys\nimport json\nimport numpy\nfrom casacore import tables\n\ninputs = json.loads(r\"\"\"$(inputs)\"\"\")\nbeamfreq = inputs['beamfreq']\nms_list = sys.argv[1:]\n\n# Following numbers are based at 60 MHz (old.astron.nl/radio-observatory/astronomers/lofar-imaging-capabilities-sensitivity/lofar-imaging-capabilities/lofa)\n\nwith tables.table(ms_list[0]+'/OBSERVATION', ack = False) as t:\n antenna_set = t.getcell(\"LOFAR_ANTENNA_SET\",0)\nscale = 60e6/beamfreq\n\nif 'HBA' in antenna_set:\n fwhm = 10.0\nelif 'OUTER' in antenna_set:\n fwhm = 3.88 * scale\nelif 'SPARSE' in antenna_set:\n fwhm = 4.85 * scale\nelif 'INNER' in antenna_set:\n fwhm = 9.77 * scale\n\ncwl_output = {\"FWHM\": fwhm}\n\nwith open('./out.json', 'w') as fp:\n json.dump(cwl_output, fp)\n \n" ; cwl:entryname "getFWHM.py" ] ] ; cwl:stderr "getFWHM_err.log" ; cwl:stdout "getFWHM.log" . cwl:linkMerge "merge_flattened" ; cwl:source . cwl:source . sld:type cwl:File . cwl:outputSource ; cwl:pickValue "all_non_null" ; sld:type cwl:File . rdfs:label "compare_station_list" ; cwl:in , ; cwl:out , ; cwl:run . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.beammode=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . sld:default "target" . sld:default true . rdfs:comment "Output h5parm" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_file.basename)" ] ; sld:type cwl:File . cwl:source ; cwl:valueFrom "$([self])" . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . sld:default "MODEL_DATA" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-temp-dir" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:string , xsd:boolean . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:arguments ( "steps=[applycal, count]" "msout=." ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:stderr "applycal_$(inputs.correction)_err.log" ; cwl:stdout "applycal_$(inputs.correction).log" . cwl:source . sld:default 120 . sld:default 1 . cwl:source . rdfs:comment "A cell value in axisReplicate from which to copy the data values." ; sld:type xsd:string , sld:null . cwl:source . cwl:source . sld:default true . sld:default 2e+07 , 1e+09 . rdfs:comment "Input Measurement Set" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory . cwl:pickValue "all_non_null" ; cwl:source ; cwl:valueFrom "$([self])" . cwl:source . rdfs:comment "Specify column to flag" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-column" ; CommandLineBinding:shellQuote false ] ; sld:type xsd:string , sld:null . cwl:source . sld:default "MODEL_DATA" . sld:default true ; sld:type xsd:boolean , sld:null . cwl:source ; cwl:valueFrom "$(self+\"_blank2.fits\")" . cwl:source . cwl:source . sld:default true . sld:default "sol000" . rdfs:label "concat_logfiles_model" ; cwl:in , ; cwl:out ; cwl:run . sld:default "YY" . cwl:source . cwl:source ; cwl:valueFrom "$((Math.round(2.1 * self * 3600 / 10.)) % 2 > 0 ? [Math.round(2.1 * self * 3600 / 10.) + 1 , Math.round(2.1 * self * 3600 / 10.) + 1] : [Math.round(2.1 * self * 3600 / 10.), Math.round(2.1 * self * 3600 / 10.)])" . cwl:linkMerge "merge_flattened" ; cwl:outputSource , , , , , , , , , , ; cwl:pickValue "all_non_null" ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Reference antenna, by default the first." ; sld:type xsd:string , sld:null . sld:default "Dysco" . rdfs:comment "Diameter of the beam" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--pbcut" ] ; sld:type xsd:float , sld:null . cwl:source . sld:default "target" . cwl:source . cwl:source . rdfs:comment "Split the I/O in n chunks. If you run out of memory, set this to a value > 2." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-c" ] ; sld:default 8 ; sld:type xsd:int , sld:null . rdfs:comment "Provide a station list manually" ; sld:type xsd:string , sld:null . rdfs:comment "List of directions to calibrate on" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.directions=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default "DELETE COLUMN CIRC_PHASEDIFF_DATA, FR_MODEL_DATA" . sld:default 8.5e-01 . sld:default 1000000 . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fit-spectral-pol" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean , xsd:int . cwl:source . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-beam-size" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type xsd:boolean , xsd:float , sld:null . sld:default true . rdfs:comment "Baselines to be selected" ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:prefix "msin.baseline=" ; CommandLineBinding:separate false ] ; sld:type xsd:string , sld:null . sld:default "MODEL_DATA" . sld:type xsd:int , sld:null . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 0 ? Math.round(self/4.e6) : 1)" . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:source . rdfs:comment "Adaprtive threshold" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-a" ] ; sld:default 50 ; sld:type xsd:int , sld:null . cwl:source ; cwl:valueFrom "$(self+\".reg\")" . cwl:source . cwl:source . rdfs:comment "normalization is done in logspace" ; sld:type xsd:boolean , sld:null . rdfs:comment "Tabs to plot" ; sld:type xsd:string . rdfs:comment "Output logfile" ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "ddecal*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:linkMerge "merge_flattened" ; cwl:source , , , , , , . sld:default "target" . sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source . sld:default "Dysco" . sld:default "tec" . cwl:source . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.uvmmax=" ; CommandLineBinding:separate false ] ; sld:default 1e+15 ; sld:type sld:null , xsd:float . rdfs:label "losoto_plot_amp" ; cwl:in , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . rdfs:comment "verbose output" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-v" ] ; sld:default true ; sld:type xsd:boolean . sld:default "amplitudeSmooth" . a cwl:CommandLineTool ; rdfs:label "blank_image_reg" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "blank_image_reg.py" ) ; cwl:baseCommand ( "blank_image_reg.py" ) ; cwl:baseCommand ( "blank_image_reg.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , ; cwl:outputs , , ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InplaceUpdateRequirement ; InplaceUpdateRequirement:inplaceUpdate true ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_image)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_image)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable true ; cwl:entry "$(inputs.input_image)" ] ] ; cwl:stderr "blank_image_reg.log" ; cwl:stdout "blank_image_reg_err.log" . rdfs:comment "Output data column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msout.datacolumn=" ; CommandLineBinding:separate false ] ; sld:type xsd:string . sld:default "ant" . sld:default "briggs -0.3" . cwl:linkMerge "merge_flattened" ; cwl:source , , , , . sld:default "CORRECTED_DATA" . sld:default 8.5e-01 . sld:default true . sld:default true . sld:type xsd:int , sld:null . cwl:source . rdfs:comment "Solution table" ; sld:type xsd:string . sld:default "LBA" ; sld:type xsd:string , sld:null . sld:default true . rdfs:comment "Number of channels in each channel block, for which the solution is assumed to be constant." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.nchan=" ; CommandLineBinding:separate false ] ; sld:default 1 ; sld:type xsd:int , sld:null . rdfs:comment "Input image" ; cwl:inputBinding [ CommandLineBinding:position 0 ] ; sld:type cwl:Directory ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-fits-mask" ; CommandLineBinding:shellQuote false ] ; sld:type sld:null , cwl:File . cwl:source . rdfs:label "losoto_plot_tec2" ; cwl:in , , , , , , , , ; cwl:out , , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:outputSource ; sld:type cwl:File . sld:default "losoto_amp" . rdfs:comment "Min max value for the independent variable (0 means automatic).\n" ; sld:type sld:null ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] ; sld:type [ sld:items xsd:float ; sld:type sld:array ] . rdfs:label "BLsmooth" ; cwl:in , , , , , , , , ; cwl:out , ; cwl:run . rdfs:comment "Input calibration solutions" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--solset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--solset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--solset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--solset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--solset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--solset" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--solset" ] ; sld:default "sol000" ; sld:type sld:null , xsd:string . cwl:outputSource ; sld:type [ sld:items cwl:Directory ; sld:type sld:array ] . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 0 ? Math.round(self/4.e6) : 1)" . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "wsclean*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "GSM" ; sld:type xsd:string , sld:null . cwl:source . cwl:source ; cwl:valueFrom "$(self+\"amplitude\")" . rdfs:label "concat_logfiles_calib_targ_amp" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source . sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . cwl:outputBinding [ CommandOutputBinding:glob "aoflag.log" ] ; sld:type cwl:File . cwl:source ; cwl:valueFrom "$(self.replaceAll(';',';!'))" . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.image_name)-*-model.fits" , "$(inputs.image_name)-model.fits" ] ; sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . sld:default "predict_targ" . cwl:source . sld:type cwl:Directory . cwl:source . sld:default true . rdfs:label "concat_logfiles_aoflag" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . sld:type cwl:File , sld:null . rdfs:comment "reverse final combined mask" ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--inverse" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--inverse" ] ; cwl:inputBinding [ CommandLineBinding:position 2 ; CommandLineBinding:prefix "--inverse" ] ; sld:type xsd:int , sld:null . cwl:source . cwl:outputBinding [ CommandOutputBinding:glob "compareStationList*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "compareStationList*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "compareStationList*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "compareStationList*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-use-wgridder" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:boolean . cwl:source . cwl:source . rdfs:comment "output region file" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outfile)" ] ; sld:type cwl:File . a cwl:Workflow ; rdfs:label "prepare_fr" ; ns1:original_cwlVersion "v1.2" ; Workflow:steps , , , , , , ; cwl:cwlVersion cwl:v1.2 ; cwl:inputs , , , , ; cwl:outputs , , ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:StepInputExpressionRequirement ] . rdfs:comment "MS set output" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory . sld:default 0 . rdfs:comment "Column name to smooth" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-i" ] ; sld:default "DATA" ; sld:type sld:null , xsd:string . sld:default "CIRC_PHASEDIFF_DATA" . sld:default "Dysco" . sld:default "[CS001LBA,CS002LBA,CS003LBA,CS004LBA,CS005LBA,CS006LBA,CS007LBA]" . rdfs:label "concat_logfiles_calib_targ1" ; cwl:in , ; cwl:out ; cwl:run . cwl:source . sld:type xsd:boolean , sld:null . sld:default "add_corrected_col" . sld:default "sol000/tec000" . rdfs:comment "Filter these baselines for the comparison" ; sld:default "*&" ; sld:type xsd:string , sld:null . cwl:source ; cwl:valueFrom "$(self+\"_lowres\")" . sld:default "XX" . rdfs:comment "Input data Column" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "msin.datacolumn=" ; CommandLineBinding:separate false ] ; sld:default "DATA" ; sld:type xsd:string , sld:null . sld:default 8 . cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "predict.sourcedb=" ; CommandLineBinding:separate false ] ; sld:type cwl:Directory , cwl:File . rdfs:comment "Filter these antenna string from the processing" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--filter" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--filter" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--filter" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--filter" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--filter" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--filter" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "--filter" ] ; sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . rdfs:comment "Output region file name" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--outfile" ] ; sld:type xsd:string . cwl:source . sld:default 2 . rdfs:comment "Number of threads DP3 is allowed to use." ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type sld:null , xsd:int . sld:default "amplitudeSmooth" . sld:default "calib_targ_slowtec" . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-parallel-gridding" ; CommandLineBinding:shellQuote false ] ; sld:default false ; sld:type sld:null , xsd:int , xsd:boolean . sld:default 2000 . sld:default 1.5e+00 . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-name" ; CommandLineBinding:shellQuote false ] ; sld:default "pointing" ; sld:type sld:null , cwl:File , xsd:string . cwl:source ; cwl:valueFrom "$(self+\"_lowres\")" . sld:default "calib_targ_fasttec" . sld:default "ant" . cwl:source . sld:default -5e-01 , 5e-01 . rdfs:comment "Output h5parm" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.outh5parmname)" ] ; sld:type cwl:File . cwl:source ; cwl:valueFrom "$(self+\".mask\")" . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:source . a cwl:CommandLineTool ; rdfs:label "make_mask" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "make_mask.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , ; cwl:outputs , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.image)" ] ] ; cwl:stderr "make_mask.log" ; cwl:stdout "make_mask_err.log" . sld:default "time" , "freq" . sld:default "set CORRECTED_DATA = DATA" . sld:default "ph_" . sld:default true ; sld:type xsd:boolean , sld:null . sld:default "sol000/phase000" . cwl:source ; cwl:valueFrom "$(Math.round(self/4.e6) > 1)" . cwl:in , , , , , ; cwl:out , ; cwl:run . rdfs:label "image_tmp" ; cwl:in , , , , , ; cwl:out , , ; cwl:run . cwl:source . cwl:source . rdfs:label "concat_logfiles_corrupt" ; cwl:in , ; cwl:out ; cwl:run . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.input_h5parm.basename)-losoto*.log" ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Save the newly computed WEIGHT_SPECTRUM, this action permanently modify the MS!" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-w" ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default false ; sld:type xsd:boolean , sld:null . sld:type cwl:Directory . cwl:source . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:source . sld:default true . rdfs:comment "Convert from circular to linear" ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "--reverse" ] ; sld:default false ; sld:type xsd:boolean , sld:null . rdfs:comment "Propagate solutions of the previous time slot only if the solve converged" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.propagateconvergedonly=True" ] ; sld:default true ; sld:type sld:null , xsd:boolean . sld:default 500 . cwl:source . sld:default 1e-03 . sld:default "sol000/tec000" . cwl:linkMerge "merge_flattened" ; cwl:source , . sld:type cwl:File . rdfs:comment "List of model data to be reused from previous (ddecal) step(s). The list should contain the model data names, as set by a previous step" ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; cwl:inputBinding [ CommandLineBinding:prefix "ddecal.reusemodel=" ; CommandLineBinding:separate false ; CommandLineBinding:shellQuote false ; cwl:valueFrom "[$(self.join(','))]" ] ; sld:type sld:null ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] ; sld:type [ sld:items xsd:string ; sld:type sld:array ] . sld:default 512 . sld:default "faraday" . sld:default true . sld:default -3.14e+00 , 3.14e+00 . sld:default "[CR]S*&" ; sld:type xsd:string , sld:null . rdfs:label "concat_logfiles_calib_targ1" ; cwl:in , ; cwl:out ; cwl:run . rdfs:comment "maximum amount of threads to be used for processing" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "numthreads=" ; CommandLineBinding:separate false ] ; sld:type xsd:int , sld:null . a cwl:ExpressionTool ; rdfs:label "merge_array_files" ; ns1:original_cwlVersion "v1.2" ; ExpressionTool:expression "${\n var out_file = []\n for(var i=0; i ; cwl:outputs ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] . rdfs:comment "Number of columns in a multi-table image. By default is automatically\nchosen.\n" ; sld:type xsd:int , sld:null . sld:default 4 . cwl:linkMerge "merge_flattened" ; cwl:pickValue "all_non_null" ; cwl:source , , . sld:default "target" . rdfs:label "concat_logfiles_calib_targ_amp" ; cwl:in , , ; cwl:out ; cwl:run ; cwl:when "$(inputs.execute)" . rdfs:comment "Maximum number of iterations" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "ddecal.maxiter=" ; CommandLineBinding:separate false ] ; sld:default 50 ; sld:type sld:null , xsd:int . rdfs:label "H5parm_collector_tec2" ; cwl:in , , , , ; cwl:out , ; cwl:run ; cwl:when "$(inputs.execute)" . cwl:source ; cwl:valueFrom "$(self==\"1\" ? true : false)" . cwl:source . rdfs:label "make_beam_reg" ; cwl:in , , ; cwl:out , ; cwl:run . sld:default "sol000/phase000" . sld:default "set CORRECTED_DATA = CORRECTED_DATA - MODEL_DATA" . cwl:outputSource ; sld:type cwl:File . a cwl:CommandLineTool ; ns1:original_cwlVersion "v1.2" ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:arguments ( "steps=[ddecal,count]" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:baseCommand ( "DP3" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ; cwl:outputs , , , ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InlineJavascriptRequirement ] ; cwl:requirements [ a cwl:InitialWorkDirRequirement ; cwl:listing [ Dirent:writable false ; cwl:entry "$(inputs.msin)" ] ] ; cwl:requirements [ a cwl:ResourceRequirement ; ResourceRequirement:coresMin "$(inputs.max_dp3_threads)" ] ; cwl:stderr "ddecal_err.log" ; cwl:stdout "ddecal.log" . sld:default -5e-01 , 5e-01 . sld:default 512 . cwl:source . sld:type xsd:boolean , sld:null . cwl:source . rdfs:comment "Do not smooth in frequency" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; sld:default false ; sld:type xsd:boolean , sld:null . sld:default 0e+00 . sld:default true . rdfs:comment "specifies a customized strategy\n" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-strategy" ; CommandLineBinding:separate true ; CommandLineBinding:shellQuote false ] ; sld:default "$LINC_DATA_ROOT/rfistrategies/lofar-default.lua" ; sld:type cwl:File , xsd:string , sld:null . a cwl:CommandLineTool ; rdfs:label "make_beam_reg" ; ns1:original_cwlVersion "v1.2" ; cwl:baseCommand ( "make_beam_reg.py" ) ; cwl:cwlVersion cwl:v1.2 ; cwl:hints [ a cwl:DockerRequirement ; DockerRequirement:dockerPull "astronrd/linc" ] ; cwl:inputs , , , , ; cwl:outputs , ; cwl:stderr "make_beam_reg.log" ; cwl:stdout "make_beam_reg_err.log" . cwl:outputSource ; sld:type cwl:File . rdfs:comment "data value to be set" ; sld:default 0e+00 ; sld:type xsd:float , sld:null . rdfs:comment "removes all axes with the length of 1" ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; cwl:inputBinding [ CommandLineBinding:position 0 ; CommandLineBinding:prefix "-q" ] ; sld:default false ; sld:type xsd:boolean . cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; cwl:inputBinding [ CommandLineBinding:position 1 ; CommandLineBinding:prefix "-reuse-psf" ; CommandLineBinding:shellQuote false ; cwl:valueFrom "$(self[0].nameroot.replaceAll('-psf','').replaceAll('-0000',''))" ] ; sld:type sld:null ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] ; sld:type [ sld:items cwl:File ; sld:type sld:array ] . rdfs:comment "Output Measurement Set" ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; cwl:outputBinding [ CommandOutputBinding:glob "$(inputs.msin.basename)" ] ; sld:type cwl:Directory .