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		label=adapter_trim_end,
		lp="1063,247.5",
		pos="e,1045.1,234.44 1022.2,268.68 1021.2,261.08 1020.9,249.98 1027,243 1029,240.74 1032.6,238.75 1037.2,237"];
	ribosomal_intervals -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1925.9 268.59 1918.51 258.95 1908 242.37 1908 226 1908 226 1908 226 1908 134 1908 118.79 1896.25 108.88 1882.05 \
102.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1883.26 100.31 1875.85 99.98 1881.44 104.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1948 178.1 0 80 19 -ribosomal_intervals ",
		label=ribosomal_intervals,
		lp="1948,180",
		pos="e,1874.4,99.418 1925.9,268.59 1918.5,258.95 1908,242.37 1908,226 1908,226 1908,226 1908,134 1908,118.79 1896.2,108.88 1882,102.47"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1257.17 268.56 1244.34 265.56 1229.55 262.35 1216 260 1186.89 254.95 1177.42 263.02 1150 252 1143.81 249.51 1143.75 \
246.38 1138 243 1134.99 241.23 1131.76 239.52 1128.5 237.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1129.68 235.76 1122.3 235 1127.6 240.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1182 245.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="1182,247.5",
		pos="e,1120.9,234.36 1257.2,268.56 1244.3,265.56 1229.5,262.35 1216,260 1186.9,254.95 1177.4,263.02 1150,252 1143.8,249.51 1143.7,246.38 \
1138,243 1135,241.23 1131.8,239.52 1128.5,237.91"];
	read_group_id -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1489.71 268.55 1481.35 265.28 1471.36 261.88 1462 260 1426.22 252.83 1332.32 264.38 1298 252 1291.73 249.74 1292.22 \
245.39 1286 243 1274.31 238.5 1252.73 235.17 1228.3 232.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1228.62 230.28 1221.42 232.05 1228.16 235.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1327 245.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="1327,247.5",
		pos="e,1219.9,231.91 1489.7,268.55 1481.4,265.28 1471.4,261.88 1462,260 1426.2,252.83 1332.3,264.38 1298,252 1291.7,249.74 1292.2,245.39 \
1286,243 1274.3,238.5 1252.7,235.17 1228.3,232.71"];
	transcript_to_gene	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 885.5 80.5 885.5 99.5 1028.5 99.5 1028.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 957 87.5 0 127 26 -Kallisto: TranscriptToGene ",
		height=0.27778,
		label="Kallisto: TranscriptToGene",
		pos="957,90",
		rects="885.5,80.5,1028.5,99.5",
		width=1.9861];
	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 10 254.89 268.81 258.15 258.84 263 241.4 263 226 263 226 263 226 263 134 263 103.53 694.76 94.38 877.17 91.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 877.19 94.32 884.15 91.77 877.12 89.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 323.5 178.1 0 121 28 -gene_transcript_lookup_table ",
		label=gene_transcript_lookup_table,
		lp="323.5,180",
		pos="e,885.67,91.752 254.89,268.81 258.15,258.84 263,241.4 263,226 263,226 263,226 263,134 263,103.53 694.76,94.375 877.17,91.867"];
	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 1126.94 268.58 1118.27 264.85 1109.75 259.53 1104 252 1101.88 249.22 1100.67 245.78 1100.01 242.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1102.47 242.33 1099.46 235.55 1097.59 242.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1122.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="1122.5,247.5",
		pos="e,1099.3,234.05 1126.9,268.58 1118.3,264.85 1109.7,259.53 1104,252 1101.9,249.22 1100.7,245.78 1100,242.32"];
	reference_index -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1393 268.61 1383.92 265.34 1373.08 261.93 1363 260 1332.4 254.13 1252.27 262.69 1223 252 1216.74 249.71 1217.15 \
245.58 1211 243 1205.12 240.53 1198.94 238.42 1192.62 236.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1193.41 234.28 1186.01 234.85 1192.15 239.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1256 245.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="1256,247.5",
		pos="e,1184.6,234.47 1393,268.61 1383.9,265.34 1373.1,261.93 1363,260 1332.4,254.13 1252.3,262.69 1223,252 1216.7,249.71 1217.1,245.58 \
1211,243 1205.1,240.53 1198.9,238.42 1192.6,236.6"];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 10 1672.65 268.62 1677.68 258.74 1685 241.68 1685 226 1685 226 1685 226 1685 134 1685 120.76 1674.79 110.7 1663.6 \
103.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1664.82 101.53 1657.52 100.21 1662.4 105.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1729.5 178.1 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="1729.5,180",
		pos="e,1656.2,99.463 1672.6,268.62 1677.7,258.74 1685,241.68 1685,226 1685,226 1685,226 1685,134 1685,120.76 1674.8,110.7 1663.6,103.66"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 829.23 268.56 856.17 260.81 898.02 249.56 935 243 951.84 240.01 969.75 237.5 987.33 235.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 987.2 237.87 993.87 234.63 986.64 233.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 978 245.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="978,247.5",
		pos="e,995.38,234.45 829.23,268.56 856.17,260.81 898.02,249.56 935,243 951.84,240.01 969.75,237.5 987.33,235.39"];
	refFlat -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1848 268.7 1848 258.6 1848 241.05 1848 226 1848 226 1848 226 1848 134 1848 124.61 1844.77 114.68 1841.31 106.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1843.63 105.89 1838.4 100.63 1839.21 108.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1861.5 178.1 0 27 7 -refFlat ",
		label=refFlat,
		lp="1861.5,180",
		pos="e,1837.7,99.269 1848,268.7 1848,258.6 1848,241.05 1848,226 1848,226 1848,226 1848,134 1848,124.61 1844.8,114.68 1841.3,106.73"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 13 1778.68 268.57 1784.3 249.2 1795.09 200.82 1774 170 1757.45 145.82 1737.16 161.57 1713 145 1694.33 132.2 1696.75 \
120.68 1678 108 1675.16 106.08 1672.07 104.32 1668.89 102.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1670.15 100.62 1662.76 99.95 1668.12 105.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1811 178.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="1811,180",
		pos="e,1661.4,99.324 1778.7,268.57 1784.3,249.2 1795.1,200.82 1774,170 1757.4,145.82 1737.2,161.57 1713,145 1694.3,132.2 1696.7,120.68 \
1678,108 1675.2,106.08 1672.1,104.32 1668.9,102.73"];
	kallisto_index -> kallisto	[_draw_="c 7 -#000000 B 7 77.84 268.53 85.84 265.42 95.23 262.14 104 260 457.92 173.79 897.98 145.69 1047.49 138.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1047.28 140.75 1054.15 137.96 1047.04 135.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 453.5 200.6 0 55 14 -kallisto_index ",
		label=kallisto_index,
		lp="453.5,202.5",
		pos="e,1055.7,137.89 77.84,268.53 85.838,265.42 95.232,262.14 104,260 457.92,173.79 897.98,145.69 1047.5,138.28"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 4 1123.88 125.56 1168.96 109.63 1266.63 75.11 1317.2 57.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1317.99 59.56 1323.77 54.92 1316.35 54.94 ",
		pos="e,1325.2,54.412 1123.9,125.56 1169,109.63 1266.6,75.112 1317.2,57.237"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 4 1098.27 125.56 1095.31 111.07 1089.2 81.21 1085.37 62.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1087.8 62.13 1084 55.77 1083 63.12 ",
		pos="e,1083.7,54.284 1098.3,125.56 1095.3,111.07 1089.2,81.205 1085.4,62.471"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 1112.18 125.56 1134.42 110.15 1181.77 77.34 1208.19 59.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1209.44 61.15 1213.8 55.15 1206.65 57.12 ",
		pos="e,1215,54.284 1112.2,125.56 1134.4,110.15 1181.8,77.342 1208.2,59.036"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 1055.75 127.29 1042.18 124.69 1027.33 121.29 1014 117 1002.45 113.28 990.14 107.86 979.93 102.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 981.29 100.88 973.93 99.97 979.12 105.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1053.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="1053.5,112.5",
		pos="e,972.58,99.302 1055.7,127.29 1042.2,124.69 1027.3,121.29 1014,117 1002.4,113.28 990.14,107.86 979.93,102.94"];
	mark_dup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1461 125.5 1461 144.5 1599 144.5 1599 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1530 132.5 0 122 24 -Mark duplicates and Sort ",
		height=0.27778,
		label="Mark duplicates and Sort",
		pos="1530,135",
		rects="1461,125.5,1599,144.5",
		width=1.9167];
	mark_dup -> final_bam	[_draw_="c 7 -#000000 B 4 1520.8 125.56 1504.27 110.41 1469.41 78.46 1449.26 59.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1450.97 58.23 1444.15 55.31 1447.66 61.84 ",
		pos="e,1443,54.284 1520.8,125.56 1504.3,110.41 1469.4,78.458 1449.3,59.987"];
	mark_dup -> stringtie	[_draw_="c 7 -#000000 B 4 1550.74 125.5 1566.71 118.97 1588.94 109.86 1606.57 102.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1607.35 104.97 1612.9 100.05 1605.49 100.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1600.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1600.5,112.5",
		pos="e,1614.3,99.478 1550.7,125.5 1566.7,118.97 1588.9,109.86 1606.6,102.64"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 957 80.71 957 75.59 957 68.85 957 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 959.45 62.78 957 55.78 954.55 62.78 ",
		pos="e,957,54.265 957,80.709 957,75.593 957,68.848 957,62.666"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1713 125.5 1713 144.5 1805 144.5 1805 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1759 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="1759,135",
		rects="1713,125.5,1805,144.5",
		width=1.2778];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 7 1766.8 125.89 1772.53 120.28 1780.73 112.97 1789 108 1792.16 106.1 1795.58 104.34 1799.06 102.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1799.84 105.06 1805.31 100.05 1797.91 100.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1798.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1798.5,112.5",
		pos="e,1806.7,99.453 1766.8,125.89 1772.5,120.28 1780.7,112.97 1789,108 1792.2,106.1 1795.6,104.34 1799.1,102.73"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 1100 215.56 1100 201.14 1100 171.48 1100 152.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1102.45 152.8 1100 145.8 1097.55 152.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1113 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="1113,180",
		pos="e,1100,144.28 1100,215.56 1100,201.14 1100,171.48 1100,152.73"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1532 170.5 1532 189.5 1642 189.5 1642 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1587 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="1587,180",
		rects="1532,170.5,1642,189.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 7 1219.64 219.53 1275.71 216.87 1343.36 212.84 1404 207 1456.67 201.93 1471.52 198.34 1523.7 190.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1523.98 193.07 1530.55 189.63 1523.27 188.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1485.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1485.5,202.5",
		pos="e,1532,189.41 1219.6,219.53 1275.7,216.87 1343.4,212.84 1404,207 1456.7,201.93 1471.5,198.34 1523.7,190.63"];
	merge -> mark_dup	[_draw_="c 7 -#000000 B 7 1582.58 170.85 1579.2 165.24 1574.09 157.92 1568 153 1565.92 151.32 1563.65 149.77 1561.28 148.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1562.67 146.31 1555.34 145.17 1560.36 150.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1585.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1585.5,157.5",
		pos="e,1554,144.46 1582.6,170.85 1579.2,165.24 1574.1,157.92 1568,153 1565.9,151.32 1563.6,149.77 1561.3,148.34"];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 1620.98 170.5 1648.54 163.61 1687.53 153.87 1717.03 146.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1717.42 148.92 1723.62 144.84 1716.24 144.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1697.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1697.5,157.5",
		pos="e,1725.1,144.48 1621,170.5 1648.5,163.61 1687.5,153.87 1717,146.49"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 1615.24 80.5 1600.18 74.03 1579.24 65.02 1562.53 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1563.5 55.59 1556.11 55.08 1561.57 60.09 ",
		pos="e,1554.7,54.478 1615.2,80.505 1600.2,74.026 1579.2,65.024 1562.5,57.84"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 1644.83 80.71 1651.89 74.76 1661.56 66.61 1669.75 59.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1671.27 61.63 1675.04 55.24 1668.11 57.88 ",
		pos="e,1676.2,54.265 1644.8,80.709 1651.9,74.76 1661.6,66.609 1669.8,59.701"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 1825.29 80.71 1819.86 74.88 1812.47 66.93 1806.13 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1808.28 58.83 1801.72 55.37 1804.69 62.17 ",
		pos="e,1800.7,54.265 1825.3,80.709 1819.9,74.879 1812.5,66.934 1806.1,60.117"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 1835.12 80.71 1836.46 75.47 1838.24 68.53 1839.85 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1842.15 63.12 1841.51 55.73 1837.4 61.91 ",
		pos="e,1841.9,54.265 1835.1,80.709 1836.5,75.474 1838.2,68.534 1839.8,62.235"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1450.5 170.5 1450.5 189.5 1527.5 189.5 1527.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1489 177.5 0 61 12 -\"coordinate\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"coordinate\"",
		pos="1489,180",
		rects="1450.5,170.5,1527.5,189.5",
		width=1.0694];
	default1 -> mark_dup	[_draw_="c 7 -#000000 B 7 1492.59 170.61 1495.2 165.17 1499.13 158.15 1504 153 1505.23 151.69 1506.59 150.44 1508.01 149.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1509.13 151.47 1513.29 145.33 1506.21 147.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1537.5 155.6 0 67 16 -input_sort_order ",
		label=input_sort_order,
		lp="1537.5,157.5",
		pos="e,1514.5,144.43 1492.6,170.61 1495.2,165.17 1499.1,158.15 1504,153 1505.2,151.69 1506.6,150.44 1508,149.25"];
}